Wall clock time and date at job start Tue Mar 31 2020 07:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47366 * 354.98220 * 3 2 1 5 5 C 1.34951 * 126.03633 * 124.99621 * 4 3 2 6 6 C 1.35317 * 107.74601 * 180.20718 * 5 4 3 7 7 C 1.39876 * 107.91922 * 359.64694 * 6 5 4 8 8 C 1.50697 * 125.89686 * 180.14134 * 7 6 5 9 9 N 1.46903 * 109.47225 * 94.73512 * 8 7 6 10 10 C 1.46900 * 110.99956 * 173.94480 * 9 8 7 11 11 C 1.52995 * 109.47161 * 190.00150 * 10 9 8 12 12 C 1.50697 * 109.47384 * 179.97438 * 11 10 9 13 13 H 1.08008 * 119.99766 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00123 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00326 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99804 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47091 * 90.00308 * 16 14 12 18 18 H 1.48500 * 109.46956 * 209.99738 * 16 14 12 19 19 H 1.48497 * 109.47322 * 330.00032 * 16 14 12 20 20 C 1.46893 * 110.99799 * 297.89880 * 9 8 7 21 21 C 1.52994 * 109.47280 * 293.08427 * 20 9 8 22 22 O 1.42900 * 109.47019 * 68.26908 * 21 20 9 23 23 C 1.42898 * 113.99959 * 179.97438 * 22 21 20 24 24 N 1.30840 * 108.19879 * 0.36064 * 7 6 5 25 25 H 4.40640 * 5.51408 * 179.97438 * 4 1 2 26 26 H 1.09007 * 109.46843 * 234.98593 * 3 2 1 27 27 H 1.08993 * 109.47217 * 114.98770 * 3 2 1 28 28 H 1.07999 * 126.12560 * 359.95192 * 5 4 3 29 29 H 1.07999 * 126.04014 * 179.77140 * 6 5 4 30 30 H 1.09002 * 109.46909 * 214.73342 * 8 7 6 31 31 H 1.09001 * 109.47146 * 334.73107 * 8 7 6 32 32 H 1.09006 * 109.47328 * 309.99996 * 10 9 8 33 33 H 1.09000 * 109.47278 * 69.99942 * 10 9 8 34 34 H 1.08999 * 109.47174 * 299.99974 * 11 10 9 35 35 H 1.09000 * 109.47195 * 59.99741 * 11 10 9 36 36 H 0.96995 * 120.00046 * 180.02562 * 15 14 12 37 37 H 1.08998 * 109.47305 * 53.08764 * 20 9 8 38 38 H 1.09006 * 109.46866 * 173.08458 * 20 9 8 39 39 H 1.09002 * 109.47480 * 188.26837 * 21 20 9 40 40 H 1.08995 * 109.47470 * 308.26925 * 21 20 9 41 41 H 1.08997 * 109.47297 * 60.00063 * 23 22 21 42 42 H 1.09003 * 109.47406 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.47446 * 300.00094 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1350 -1.3750 0.1208 5 6 3.9901 -1.9906 -0.7225 6 6 4.1857 -3.2491 -0.2655 7 6 3.4305 -3.4054 0.9015 8 6 3.3545 -4.6524 1.7443 9 7 4.3274 -4.5622 2.8412 10 6 4.1836 -5.6937 3.7669 11 6 5.0301 -5.4415 5.0161 12 6 4.8821 -6.6020 5.9660 13 1 4.2474 -7.4360 5.7049 14 6 5.5562 -6.5987 7.1687 15 7 6.3280 -5.5826 7.4873 16 14 5.3721 -8.0371 8.3464 17 1 6.4117 -9.0554 8.0504 18 1 5.5328 -7.5573 9.7425 19 1 4.0258 -8.6419 8.1826 20 6 5.6991 -4.4774 2.3225 21 6 6.0689 -5.7960 1.6406 22 8 5.2944 -5.9500 0.4496 23 6 5.5647 -7.1560 -0.2677 24 7 2.7980 -2.2836 1.1322 25 1 -1.0497 -0.0004 0.0002 26 1 3.0091 0.5905 0.8417 27 1 3.0092 0.4349 -0.9314 28 1 4.4349 -1.5577 -1.6063 29 1 4.8154 -3.9995 -0.7201 30 1 2.3503 -4.7515 2.1566 31 1 3.5816 -5.5221 1.1277 32 1 3.1369 -5.7989 4.0524 33 1 4.5205 -6.6080 3.2782 34 1 6.0768 -5.3364 4.7306 35 1 4.6933 -4.5273 5.5047 36 1 6.8024 -5.5805 8.3332 37 1 5.7647 -3.6638 1.6001 38 1 6.3879 -4.2885 3.1460 39 1 7.1289 -5.7889 1.3863 40 1 5.8633 -6.6253 2.3174 41 1 5.3489 -8.0137 0.3694 42 1 4.9369 -7.1979 -1.1578 43 1 6.6141 -7.1767 -0.5615 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491707023.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:39 Heat of formation + Delta-G solvation = 80.200429 kcal Electronic energy + Delta-G solvation = -23236.760737 eV Core-core repulsion = 19899.375279 eV Total energy + Delta-G solvation = -3337.385458 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.06702 -39.88707 -37.59819 -35.82934 -35.08284 -33.09626 -31.70926 -31.03041 -30.48459 -28.48361 -27.16396 -26.56947 -25.17823 -23.84500 -21.97926 -21.11493 -20.38678 -19.35635 -18.58443 -17.76448 -17.64112 -17.40252 -16.54290 -16.48371 -16.04154 -15.79699 -15.58871 -15.07242 -14.82383 -14.35162 -14.27077 -14.06502 -13.83716 -13.73878 -13.36346 -13.04867 -12.98926 -12.81529 -12.73670 -12.43432 -12.26137 -11.95713 -11.79870 -11.67945 -11.40104 -11.34609 -11.26279 -11.13433 -10.53253 -10.39378 -10.17599 -9.38700 -8.94923 -8.17182 -6.28153 1.03093 1.24586 1.40929 1.42834 1.53878 1.78725 1.94139 2.29679 2.42620 2.86978 3.16128 3.33591 3.35452 3.79149 4.08524 4.13608 4.19019 4.26602 4.38793 4.40335 4.49692 4.54090 4.56131 4.63144 4.67187 4.83392 4.89091 4.91451 4.97915 5.06010 5.09028 5.10112 5.17535 5.33454 5.50424 5.70461 5.81311 5.84583 6.15123 6.25696 6.27695 6.33142 6.40515 6.56848 6.88963 6.95120 7.40590 8.94916 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016408 B = 0.003706 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.059676 B = 7554.113617 C = 8673.990563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.243 4.243 3 C 0.243 3.757 4 N -0.383 5.383 5 C 0.057 3.943 6 C -0.266 4.266 7 C 0.083 3.917 8 C 0.129 3.871 9 N -0.542 5.542 10 C 0.078 3.922 11 C 0.041 3.959 12 C -0.541 4.541 13 H 0.060 0.940 14 C 0.002 3.998 15 N -0.931 5.931 16 Si 0.965 3.035 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.264 1.264 20 C 0.063 3.937 21 C 0.032 3.968 22 O -0.385 6.385 23 C 0.022 3.978 24 N -0.328 5.328 25 H 0.246 0.754 26 H 0.109 0.891 27 H 0.161 0.839 28 H 0.219 0.781 29 H 0.161 0.839 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.036 0.964 34 H -0.001 1.001 35 H -0.015 1.015 36 H 0.263 0.737 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.044 0.956 41 H 0.034 0.966 42 H 0.101 0.899 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.880 6.680 -22.617 23.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.244 4.244 3 C 0.124 3.876 4 N -0.166 5.166 5 C -0.087 4.087 6 C -0.295 4.295 7 C -0.084 4.084 8 C 0.000 4.000 9 N -0.265 5.265 10 C -0.049 4.049 11 C 0.003 3.997 12 C -0.580 4.580 13 H 0.078 0.922 14 C -0.196 4.196 15 N -0.571 5.571 16 Si 0.789 3.211 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.188 1.188 20 C -0.065 4.065 21 C -0.046 4.046 22 O -0.304 6.304 23 C -0.074 4.074 24 N -0.151 5.151 25 H 0.262 0.738 26 H 0.126 0.874 27 H 0.178 0.822 28 H 0.235 0.765 29 H 0.178 0.822 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.018 0.982 35 H 0.003 0.997 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.120 0.880 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.845 8.092 -21.537 23.512 hybrid contribution 0.753 -1.854 0.325 2.028 sum -4.092 6.237 -21.212 22.485 Atomic orbital electron populations 1.25801 0.97006 0.96130 0.99607 1.23465 0.95448 1.03543 1.01961 1.18780 0.84078 0.78088 1.06695 1.48815 1.36275 1.11760 1.19798 1.23210 0.94665 0.93395 0.97433 1.21724 1.09366 0.98712 0.99713 1.22188 0.96280 0.93851 0.96062 1.20620 0.95420 0.93066 0.90888 1.62090 1.04235 1.43994 1.16226 1.22024 0.99584 0.90557 0.92763 1.18874 0.94024 0.95031 0.91762 1.21610 1.27787 1.05339 1.03246 0.92203 1.25940 0.94815 0.98911 0.99927 1.70115 1.30769 1.32366 1.23879 0.85456 0.78975 0.79002 0.77646 1.19552 1.20903 1.18849 1.22195 0.89980 0.96469 0.97877 1.23165 0.95688 0.99056 0.86736 1.87935 1.63150 1.41794 1.37540 1.22905 1.01501 0.86399 0.96634 1.77350 1.25435 1.00831 1.11435 0.73770 0.87360 0.82191 0.76483 0.82175 0.92295 0.89007 0.92751 0.94604 0.98236 0.99689 0.92837 0.89597 0.91170 0.91782 0.93793 0.94731 0.88020 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.21 19.25 74.32 1.43 -1.78 16 2 C -0.24 -5.20 13.52 31.12 0.42 -4.77 16 3 C 0.24 4.20 6.99 84.57 0.59 4.79 16 4 N -0.38 -9.65 3.65 -357.16 -1.30 -10.95 16 5 C 0.06 1.17 11.45 83.54 0.96 2.13 16 6 C -0.27 -6.93 9.03 21.99 0.20 -6.73 16 7 C 0.08 2.74 5.81 43.10 0.25 2.99 16 8 C 0.13 4.53 5.07 85.56 0.43 4.97 16 9 N -0.54 -21.71 4.73 -900.81 -4.26 -25.97 16 10 C 0.08 3.48 4.61 86.30 0.40 3.88 16 11 C 0.04 2.23 4.89 29.85 0.15 2.38 16 12 C -0.54 -31.45 9.11 25.60 0.23 -31.22 16 13 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 14 C 0.00 0.11 5.46 84.65 0.46 0.58 16 15 N -0.93 -57.75 13.29 21.45 0.28 -57.46 16 16 Si 0.96 44.91 29.54 68.60 2.03 46.93 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 20 C 0.06 2.25 5.39 86.30 0.46 2.72 16 21 C 0.03 0.96 5.75 71.98 0.41 1.38 16 22 O -0.38 -10.13 5.57 -148.98 -0.83 -10.96 16 23 C 0.02 0.43 11.01 113.37 1.25 1.67 16 24 N -0.33 -11.46 12.39 -47.38 -0.59 -12.05 16 25 H 0.25 2.82 7.80 -4.43 -0.03 2.79 16 26 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.16 1.19 8.07 -2.39 -0.02 1.17 16 28 H 0.22 2.05 8.06 -2.91 -0.02 2.02 16 29 H 0.16 3.83 6.58 -2.91 -0.02 3.81 16 30 H 0.06 2.18 8.01 -2.39 -0.02 2.16 16 31 H 0.09 3.01 5.17 -2.39 -0.01 3.00 16 32 H 0.05 2.46 7.99 -2.38 -0.02 2.44 16 33 H 0.04 1.53 5.76 -2.39 -0.01 1.52 16 34 H 0.00 -0.04 6.62 -2.39 -0.02 -0.05 16 35 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 36 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 37 H 0.09 2.90 6.01 -2.39 -0.01 2.88 16 38 H 0.07 2.83 6.61 -2.38 -0.02 2.81 16 39 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16 40 H 0.04 1.53 5.80 -2.39 -0.01 1.51 16 41 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.10 1.57 8.14 -2.39 -0.02 1.56 16 43 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -76.66 355.20 3.96 -72.69 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.99 Total: 14.79 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: 7.65 Total: -17.02 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -5.87 Total: -106.43 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -0.83 Total: -10.96 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -76.66 3.96 -72.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491707023.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.892 kcal (2) G-P(sol) polarization free energy of solvation -76.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds