Wall clock time and date at job start Tue Mar 31 2020 06:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46498 * 109.47348 * 2 1 4 4 N 1.40042 * 126.15394 * 275.34463 * 3 2 1 5 5 C 1.30999 * 108.85863 * 180.28445 * 4 3 2 6 6 C 1.39174 * 108.83035 * 359.75981 * 5 4 3 7 7 C 1.36807 * 126.15203 * 95.21389 * 3 2 1 8 8 C 1.46426 * 126.51400 * 359.97438 * 7 3 2 9 9 C 1.35252 * 120.00255 * 55.46824 * 8 7 3 10 10 C 1.46155 * 119.99847 * 6.23704 * 9 8 7 11 11 O 1.21733 * 120.00108 * 356.49736 * 10 9 8 12 12 N 1.34778 * 120.00189 * 176.49072 * 10 9 8 13 13 C 1.46495 * 120.00379 * 185.13713 * 12 10 9 14 14 C 1.50705 * 109.47046 * 85.05193 * 13 12 10 15 15 H 1.08000 * 119.99617 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99939 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00185 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99708 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47385 * 59.99984 * 18 16 14 20 20 H 1.48501 * 109.47207 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47324 * 299.99730 * 18 16 14 22 22 C 1.46507 * 119.99576 * 5.13910 * 12 10 9 23 23 C 1.52999 * 109.47165 * 297.56799 * 22 12 10 24 24 C 1.52992 * 109.47119 * 57.57228 * 22 12 10 25 25 H 1.09003 * 109.47426 * 64.98740 * 1 2 3 26 26 H 1.09005 * 109.47477 * 184.98332 * 1 2 3 27 27 H 1.09000 * 109.47361 * 304.98373 * 1 2 3 28 28 H 1.08999 * 109.47422 * 239.99899 * 2 1 3 29 29 H 1.09007 * 109.47132 * 119.99988 * 2 1 3 30 30 H 1.07997 * 125.58379 * 179.74159 * 5 4 3 31 31 H 1.08000 * 126.17697 * 180.02562 * 6 5 4 32 32 H 1.08000 * 119.99961 * 235.46199 * 8 7 3 33 33 H 1.08001 * 120.00270 * 186.24942 * 9 8 7 34 34 H 1.08994 * 109.47262 * 205.05175 * 13 12 10 35 35 H 1.09003 * 109.47202 * 325.05475 * 13 12 10 36 36 H 0.97001 * 119.99870 * 180.02562 * 17 16 14 37 37 H 1.09003 * 109.46751 * 177.56714 * 22 12 10 38 38 H 1.08999 * 109.47079 * 64.10907 * 23 22 12 39 39 H 1.09003 * 109.46982 * 184.10680 * 23 22 12 40 40 H 1.09000 * 109.46991 * 304.10749 * 23 22 12 41 41 H 1.08994 * 109.47530 * 67.15054 * 24 22 12 42 42 H 1.09004 * 109.47108 * 187.15210 * 24 22 12 43 43 H 1.09003 * 109.47600 * 307.14577 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1944 2.1952 -1.1258 5 6 2.6514 3.3603 -0.7387 6 6 2.7848 3.3527 0.6467 7 6 2.3820 2.1086 1.1001 8 6 2.3558 1.6551 2.4921 9 6 3.0212 0.5335 2.8506 10 6 3.8762 -0.1500 1.8822 11 8 3.9399 0.2531 0.7353 12 7 4.5943 -1.2265 2.2589 13 6 5.5361 -1.8435 1.3216 14 6 6.8569 -1.1208 1.3879 15 1 6.9823 -0.2858 2.0612 16 6 7.9051 -1.5257 0.5889 17 7 7.7521 -2.5422 -0.2314 18 14 9.5424 -0.6304 0.6716 19 1 10.0867 -0.7203 2.0503 20 1 10.4967 -1.2549 -0.2795 21 1 9.3454 0.7962 0.3092 22 6 4.4331 -1.7797 3.6059 23 6 4.8522 -0.7334 4.6405 24 6 2.9679 -2.1594 3.8292 25 1 -0.3634 0.4345 -0.9313 26 1 -0.3634 -1.0238 0.0893 27 1 -0.3634 0.5892 0.8420 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.8864 4.1905 -1.3881 31 1 3.1383 4.1701 1.2576 32 1 1.8053 2.2164 3.2326 33 1 2.9205 0.1428 3.8525 34 1 5.6809 -2.8903 1.5883 35 1 5.1366 -1.7783 0.3095 36 1 8.4897 -2.8273 -0.7932 37 1 5.0583 -2.6663 3.7118 38 1 4.1807 0.1233 4.5835 39 1 4.8018 -1.1688 5.6386 40 1 5.8728 -0.4093 4.4366 41 1 2.7053 -2.9930 3.1780 42 1 2.8227 -2.4512 4.8694 43 1 2.3319 -1.3045 3.5996 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492225183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:26 Heat of formation + Delta-G solvation = 88.070024 kcal Electronic energy + Delta-G solvation = -24635.852326 eV Core-core repulsion = 21298.808119 eV Total energy + Delta-G solvation = -3337.044207 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.69209 -39.33837 -36.05153 -34.17028 -33.66687 -32.77172 -30.95871 -29.20964 -28.82796 -27.14293 -26.94054 -24.42081 -23.43312 -22.23062 -21.16673 -20.51703 -19.59973 -18.17329 -16.58435 -16.42212 -16.12558 -15.12205 -14.77672 -14.70894 -14.41623 -13.88161 -13.81657 -13.69720 -13.42579 -13.16592 -13.04315 -12.81922 -12.27808 -12.23361 -12.14428 -12.05707 -11.79858 -11.59072 -11.19367 -11.09774 -10.95426 -10.85840 -10.54077 -10.35002 -10.16563 -10.07145 -9.65835 -9.57525 -9.13947 -8.43356 -8.35942 -7.91540 -7.64145 -6.04674 -4.08921 1.16207 2.55026 3.03890 3.31624 3.32406 3.36369 3.39802 3.76672 3.99164 4.44913 4.77971 4.88299 4.94103 5.11801 5.20588 5.30025 5.30629 5.35626 5.37906 5.51806 5.56992 5.70034 5.72850 5.82861 5.90030 5.92811 5.96380 6.06669 6.11732 6.15796 6.19602 6.30042 6.38353 6.50701 6.55037 7.03834 7.15157 7.41145 7.51894 7.53786 7.91869 8.21650 8.24302 8.38486 8.88631 9.06488 9.56140 11.03342 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.006172 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.516591 B = 4535.808613 C = 5427.922067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.140 3.860 3 N -0.316 5.316 4 N -0.294 5.294 5 C 0.034 3.966 6 C -0.266 4.266 7 C 0.125 3.875 8 C -0.044 4.044 9 C -0.194 4.194 10 C 0.524 3.476 11 O -0.524 6.524 12 N -0.585 5.585 13 C 0.249 3.751 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.062 3.938 17 N -0.895 5.895 18 Si 0.896 3.104 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.276 1.276 22 C 0.133 3.867 23 C -0.179 4.179 24 C -0.178 4.178 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.174 0.826 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.154 0.846 34 H 0.031 0.969 35 H 0.041 0.959 36 H 0.263 0.737 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.969 4.532 9.413 17.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.018 3.982 3 N -0.098 5.098 4 N -0.117 5.117 5 C -0.149 4.149 6 C -0.296 4.296 7 C -0.004 4.004 8 C -0.065 4.065 9 C -0.216 4.216 10 C 0.312 3.688 11 O -0.402 6.402 12 N -0.316 5.316 13 C 0.130 3.870 14 C -0.562 4.562 15 H 0.074 0.926 16 C -0.140 4.140 17 N -0.534 5.534 18 Si 0.724 3.276 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.202 1.202 22 C 0.028 3.972 23 C -0.236 4.236 24 C -0.236 4.236 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.191 0.809 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.171 0.829 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.201 3.728 7.607 16.536 hybrid contribution 1.573 0.861 0.877 1.996 sum -12.629 4.589 8.484 15.891 Atomic orbital electron populations 1.22247 0.95348 1.02474 1.02672 1.21559 0.93025 0.78778 1.04832 1.48675 1.47920 1.10614 1.02583 1.77154 1.23216 1.02946 1.08359 1.23377 1.00614 0.95987 0.94940 1.21531 1.15342 0.97658 0.95048 1.19808 1.00672 0.91610 0.88290 1.21706 0.97377 0.95236 0.92206 1.24296 0.98345 0.97351 1.01610 1.18090 0.81378 0.81313 0.88006 1.90932 1.65787 1.64008 1.19488 1.48276 1.40721 1.28901 1.13730 1.19280 0.86483 0.92622 0.88608 1.21365 0.96068 1.15772 1.22974 0.92615 1.24910 0.98976 0.95110 0.94999 1.69913 1.32490 1.26369 1.24674 0.86585 0.83125 0.80137 0.77758 1.20261 1.21160 1.20197 1.20994 0.95913 0.97257 0.82998 1.22615 1.03320 0.99454 0.98246 1.22601 0.96748 1.02359 1.01913 0.91897 0.90912 0.92448 0.89065 0.89322 0.80904 0.84240 0.83859 0.82924 0.95056 0.94129 0.92698 0.89042 0.91619 0.92194 0.91330 0.92180 0.91691 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 10.24 37.15 0.38 -1.68 16 2 C 0.14 2.27 5.51 -4.05 -0.02 2.25 16 3 N -0.32 -5.81 2.50 -57.33 -0.14 -5.95 16 4 N -0.29 -5.74 12.54 30.51 0.38 -5.36 16 5 C 0.03 0.58 11.96 -17.56 -0.21 0.37 16 6 C -0.27 -4.43 10.83 -39.17 -0.42 -4.85 16 7 C 0.12 2.13 4.94 -82.29 -0.41 1.73 16 8 C -0.04 -0.60 9.87 -37.35 -0.37 -0.97 16 9 C -0.19 -2.82 6.00 -37.47 -0.22 -3.05 16 10 C 0.52 10.41 5.50 -13.08 -0.07 10.34 16 11 O -0.52 -12.58 10.91 5.16 0.06 -12.53 16 12 N -0.59 -11.83 2.42 -169.20 -0.41 -12.24 16 13 C 0.25 6.39 5.16 -5.19 -0.03 6.37 16 14 C -0.52 -14.83 9.35 -34.44 -0.32 -15.16 16 15 H 0.06 1.60 7.81 -52.49 -0.41 1.18 16 16 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 18 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 C 0.13 2.04 3.28 -67.93 -0.22 1.82 16 23 C -0.18 -2.39 9.00 37.16 0.33 -2.06 16 24 C -0.18 -2.06 8.91 37.15 0.33 -1.73 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 29 H 0.09 1.45 4.94 -51.92 -0.26 1.19 16 30 H 0.17 2.33 8.06 -52.49 -0.42 1.91 16 31 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 32 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.15 1.74 3.48 -52.49 -0.18 1.56 16 34 H 0.03 0.81 7.80 -51.93 -0.41 0.41 16 35 H 0.04 1.19 7.51 -51.93 -0.39 0.80 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.09 1.46 7.72 -51.93 -0.40 1.06 16 38 H 0.07 0.80 4.54 -51.93 -0.24 0.56 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.72 4.65 -51.93 -0.24 0.48 16 LS Contribution 344.57 15.07 5.19 5.19 Total: -1.00 -34.97 344.57 -6.86 -41.84 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -6.31 Total: 2.77 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -1.35 Total: -4.94 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.57 Total: -49.60 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.06 Total: -12.53 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.97 -6.86 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492225183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.907 kcal (2) G-P(sol) polarization free energy of solvation -34.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds