Wall clock time and date at job start Tue Mar 31 2020 06:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46498 * 109.47348 * 2 1 4 4 N 1.40042 * 126.15394 * 275.34463 * 3 2 1 5 5 C 1.30999 * 108.85863 * 180.28445 * 4 3 2 6 6 C 1.39174 * 108.83035 * 359.75981 * 5 4 3 7 7 C 1.36807 * 126.15203 * 95.21389 * 3 2 1 8 8 C 1.46426 * 126.51400 * 359.97438 * 7 3 2 9 9 C 1.35252 * 120.00255 * 55.46824 * 8 7 3 10 10 C 1.46155 * 119.99847 * 6.23704 * 9 8 7 11 11 O 1.21733 * 120.00108 * 356.49736 * 10 9 8 12 12 N 1.34778 * 120.00189 * 176.49072 * 10 9 8 13 13 C 1.46495 * 120.00379 * 185.13713 * 12 10 9 14 14 C 1.50705 * 109.47046 * 85.05193 * 13 12 10 15 15 H 1.08000 * 119.99617 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99939 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00185 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99708 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47385 * 59.99984 * 18 16 14 20 20 H 1.48501 * 109.47207 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47324 * 299.99730 * 18 16 14 22 22 C 1.46507 * 119.99576 * 5.13910 * 12 10 9 23 23 C 1.52999 * 109.47165 * 297.56799 * 22 12 10 24 24 C 1.52992 * 109.47119 * 57.57228 * 22 12 10 25 25 H 1.09003 * 109.47426 * 64.98740 * 1 2 3 26 26 H 1.09005 * 109.47477 * 184.98332 * 1 2 3 27 27 H 1.09000 * 109.47361 * 304.98373 * 1 2 3 28 28 H 1.08999 * 109.47422 * 239.99899 * 2 1 3 29 29 H 1.09007 * 109.47132 * 119.99988 * 2 1 3 30 30 H 1.07997 * 125.58379 * 179.74159 * 5 4 3 31 31 H 1.08000 * 126.17697 * 180.02562 * 6 5 4 32 32 H 1.08000 * 119.99961 * 235.46199 * 8 7 3 33 33 H 1.08001 * 120.00270 * 186.24942 * 9 8 7 34 34 H 1.08994 * 109.47262 * 205.05175 * 13 12 10 35 35 H 1.09003 * 109.47202 * 325.05475 * 13 12 10 36 36 H 0.97001 * 119.99870 * 180.02562 * 17 16 14 37 37 H 1.09003 * 109.46751 * 177.56714 * 22 12 10 38 38 H 1.08999 * 109.47079 * 64.10907 * 23 22 12 39 39 H 1.09003 * 109.46982 * 184.10680 * 23 22 12 40 40 H 1.09000 * 109.46991 * 304.10749 * 23 22 12 41 41 H 1.08994 * 109.47530 * 67.15054 * 24 22 12 42 42 H 1.09004 * 109.47108 * 187.15210 * 24 22 12 43 43 H 1.09003 * 109.47600 * 307.14577 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1944 2.1952 -1.1258 5 6 2.6514 3.3603 -0.7387 6 6 2.7848 3.3527 0.6467 7 6 2.3820 2.1086 1.1001 8 6 2.3558 1.6551 2.4921 9 6 3.0212 0.5335 2.8506 10 6 3.8762 -0.1500 1.8822 11 8 3.9399 0.2531 0.7353 12 7 4.5943 -1.2265 2.2589 13 6 5.5361 -1.8435 1.3216 14 6 6.8569 -1.1208 1.3879 15 1 6.9823 -0.2858 2.0612 16 6 7.9051 -1.5257 0.5889 17 7 7.7521 -2.5422 -0.2314 18 14 9.5424 -0.6304 0.6716 19 1 10.0867 -0.7203 2.0503 20 1 10.4967 -1.2549 -0.2795 21 1 9.3454 0.7962 0.3092 22 6 4.4331 -1.7797 3.6059 23 6 4.8522 -0.7334 4.6405 24 6 2.9679 -2.1594 3.8292 25 1 -0.3634 0.4345 -0.9313 26 1 -0.3634 -1.0238 0.0893 27 1 -0.3634 0.5892 0.8420 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.8864 4.1905 -1.3881 31 1 3.1383 4.1701 1.2576 32 1 1.8053 2.2164 3.2326 33 1 2.9205 0.1428 3.8525 34 1 5.6809 -2.8903 1.5883 35 1 5.1366 -1.7783 0.3095 36 1 8.4897 -2.8273 -0.7932 37 1 5.0583 -2.6663 3.7118 38 1 4.1807 0.1233 4.5835 39 1 4.8018 -1.1688 5.6386 40 1 5.8728 -0.4093 4.4366 41 1 2.7053 -2.9930 3.1780 42 1 2.8227 -2.4512 4.8694 43 1 2.3319 -1.3045 3.5996 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492225183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:25 Heat of formation + Delta-G solvation = 65.335576 kcal Electronic energy + Delta-G solvation = -24636.838165 eV Core-core repulsion = 21298.808119 eV Total energy + Delta-G solvation = -3338.030046 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.01140 -40.78961 -37.51200 -35.58766 -35.16391 -34.45633 -32.54766 -30.48503 -30.07920 -28.99257 -27.98621 -25.99317 -24.75150 -23.90248 -22.42948 -21.80961 -20.96176 -19.49446 -18.70246 -17.78228 -17.63572 -16.67356 -16.21635 -16.14015 -16.01926 -15.31050 -15.15693 -14.95408 -14.57915 -14.46355 -14.34525 -14.09187 -13.96719 -13.62054 -13.35351 -13.24050 -13.12732 -13.00349 -12.82124 -12.73752 -12.45921 -12.29324 -12.14446 -11.98717 -11.70037 -11.57548 -11.30329 -10.91010 -10.67779 -10.56974 -9.71703 -9.40655 -9.14567 -8.25597 -6.39892 -0.03364 1.27918 1.30270 1.34904 1.41745 1.80654 2.03375 2.22530 2.41300 2.54652 3.03489 3.63575 3.65029 3.74413 4.02803 4.08210 4.17854 4.27939 4.33643 4.40041 4.48740 4.60170 4.73965 4.77611 4.79502 4.82472 4.90807 4.98005 4.99018 5.02908 5.07020 5.10640 5.11419 5.20346 5.35314 5.40469 5.49794 5.57081 5.90003 5.90660 6.04581 6.27933 6.67285 6.85019 6.93496 7.26257 7.53292 8.80445 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.006172 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.516591 B = 4535.808613 C = 5427.922067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.137 3.863 3 N -0.327 5.327 4 N -0.343 5.343 5 C 0.025 3.975 6 C -0.279 4.279 7 C 0.107 3.893 8 C -0.021 4.021 9 C -0.199 4.199 10 C 0.515 3.485 11 O -0.577 6.577 12 N -0.592 5.592 13 C 0.268 3.732 14 C -0.535 4.535 15 H 0.049 0.951 16 C 0.008 3.992 17 N -0.929 5.929 18 Si 0.962 3.038 19 H -0.258 1.258 20 H -0.277 1.277 21 H -0.282 1.282 22 C 0.122 3.878 23 C -0.171 4.171 24 C -0.169 4.169 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.200 0.800 31 H 0.167 0.833 32 H 0.202 0.798 33 H 0.194 0.806 34 H 0.020 0.980 35 H -0.009 1.009 36 H 0.266 0.734 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.033 0.967 41 H 0.048 0.952 42 H 0.103 0.897 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.109 5.875 12.877 20.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.016 3.984 3 N -0.109 5.109 4 N -0.167 5.167 5 C -0.157 4.157 6 C -0.308 4.308 7 C -0.022 4.022 8 C -0.041 4.041 9 C -0.220 4.220 10 C 0.306 3.694 11 O -0.459 6.459 12 N -0.323 5.323 13 C 0.146 3.854 14 C -0.574 4.574 15 H 0.067 0.933 16 C -0.191 4.191 17 N -0.568 5.568 18 Si 0.786 3.214 19 H -0.182 1.182 20 H -0.202 1.202 21 H -0.208 1.208 22 C 0.019 3.981 23 C -0.229 4.229 24 C -0.226 4.226 25 H 0.073 0.927 26 H 0.115 0.885 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.217 0.783 31 H 0.184 0.816 32 H 0.218 0.782 33 H 0.210 0.790 34 H 0.038 0.962 35 H 0.009 0.991 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.116 0.884 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.122 0.878 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.361 5.056 11.123 19.628 hybrid contribution 1.927 0.435 -0.250 1.991 sum -13.434 5.491 10.873 18.134 Atomic orbital electron populations 1.22149 0.91923 1.04274 1.02855 1.21599 0.95654 0.78153 1.03035 1.48847 1.48259 1.10948 1.02801 1.77074 1.25296 1.04289 1.09997 1.23957 0.99654 0.96009 0.96109 1.21976 1.15278 0.98483 0.95092 1.20556 1.00081 0.91814 0.89731 1.22336 0.96085 0.94473 0.91245 1.24199 0.98463 0.97538 1.01780 1.18988 0.81342 0.80716 0.88349 1.90918 1.67570 1.65381 1.22064 1.48264 1.39788 1.29320 1.14905 1.18634 0.86760 0.92221 0.87750 1.21638 0.97376 1.15594 1.22796 0.93315 1.25812 1.02819 0.95891 0.94579 1.70036 1.33654 1.27758 1.25400 0.85559 0.78801 0.78202 0.78819 1.18221 1.20228 1.20816 1.21366 0.98633 0.97307 0.80842 1.22561 1.01506 0.99581 0.99222 1.22528 0.93545 1.02438 1.04082 0.92706 0.88459 0.90913 0.92460 0.89629 0.78304 0.81585 0.78161 0.78971 0.96245 0.99072 0.92512 0.90641 0.89713 0.88432 0.94781 0.93305 0.87845 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 10.24 71.98 0.74 -2.87 16 2 C 0.14 4.60 5.51 86.38 0.48 5.08 16 3 N -0.33 -12.19 2.50 -335.28 -0.84 -13.03 16 4 N -0.34 -13.85 12.54 -57.40 -0.72 -14.57 16 5 C 0.02 0.85 11.96 85.04 1.02 1.87 16 6 C -0.28 -8.90 10.83 22.53 0.24 -8.66 16 7 C 0.11 3.51 4.94 40.54 0.20 3.71 16 8 C -0.02 -0.48 9.87 23.71 0.23 -0.25 16 9 C -0.20 -5.16 6.00 23.64 0.14 -5.02 16 10 C 0.51 20.55 5.50 86.30 0.47 21.03 16 11 O -0.58 -28.94 10.91 -4.45 -0.05 -28.99 16 12 N -0.59 -24.49 2.42 -807.42 -1.95 -26.45 16 13 C 0.27 14.60 5.16 85.64 0.44 15.04 16 14 C -0.54 -31.57 9.35 25.60 0.24 -31.33 16 15 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 16 C 0.01 0.46 5.46 84.65 0.46 0.92 16 17 N -0.93 -57.64 13.29 21.45 0.28 -57.35 16 18 Si 0.96 46.48 29.54 68.60 2.03 48.50 16 19 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 21 H -0.28 -13.83 7.11 99.48 0.71 -13.13 16 22 C 0.12 3.57 3.28 44.99 0.15 3.72 16 23 C -0.17 -4.09 9.00 71.98 0.65 -3.44 16 24 C -0.17 -3.37 8.91 71.98 0.64 -2.73 16 25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.09 2.86 4.94 -2.38 -0.01 2.85 16 30 H 0.20 5.30 8.06 -2.91 -0.02 5.28 16 31 H 0.17 4.19 8.06 -2.91 -0.02 4.16 16 32 H 0.20 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.19 3.37 3.48 -2.91 -0.01 3.36 16 34 H 0.02 1.08 7.80 -2.39 -0.02 1.06 16 35 H -0.01 -0.56 7.51 -2.39 -0.02 -0.58 16 36 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 37 H 0.08 2.41 7.72 -2.39 -0.02 2.40 16 38 H 0.08 1.67 4.54 -2.39 -0.01 1.66 16 39 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.03 1.04 8.14 -2.39 -0.02 1.03 16 41 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.08 1.39 4.65 -2.39 -0.01 1.38 16 Total: -1.00 -83.53 344.57 5.86 -77.68 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 1.00 Total: 17.14 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 6.10 Total: -2.92 kcal Atomic # 7 Polarization: -108.18 SS G_CDS: -3.23 Total: -111.41 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -0.05 Total: -28.99 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.50 kcal Total: -83.53 5.86 -77.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492225183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.012 kcal (2) G-P(sol) polarization free energy of solvation -83.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds