Wall clock time and date at job start Tue Mar 31 2020 06:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.46921 * 2 1 4 4 N 1.40035 * 126.15303 * 275.17065 * 3 2 1 5 5 C 1.30991 * 108.86151 * 180.27467 * 4 3 2 6 6 C 1.39180 * 108.82777 * 359.74590 * 5 4 3 7 7 C 1.36799 * 126.15140 * 94.99535 * 3 2 1 8 8 C 1.46433 * 126.51775 * 359.97438 * 7 3 2 9 9 C 1.35250 * 119.99936 * 184.70294 * 8 7 3 10 10 C 1.46161 * 119.99555 * 175.26614 * 9 8 7 11 11 O 1.21735 * 120.00127 * 4.97617 * 10 9 8 12 12 N 1.34770 * 119.99713 * 184.97411 * 10 9 8 13 13 C 1.46502 * 120.00066 * 354.79466 * 12 10 9 14 14 C 1.50692 * 109.47377 * 89.99889 * 13 12 10 15 15 H 1.08002 * 120.00557 * 359.97438 * 14 13 12 16 16 C 1.37883 * 120.00082 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99854 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00042 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47410 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47188 * 119.99657 * 18 16 14 21 21 H 1.48507 * 109.47113 * 239.99491 * 18 16 14 22 22 C 1.46504 * 120.00121 * 174.78646 * 12 10 9 23 23 C 1.53001 * 109.47166 * 124.87108 * 22 12 10 24 24 C 1.52997 * 109.47454 * 244.87235 * 22 12 10 25 25 H 1.08986 * 109.47267 * 300.00044 * 1 2 3 26 26 H 1.09003 * 109.46709 * 60.00740 * 1 2 3 27 27 H 1.08998 * 109.46676 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47340 * 239.99896 * 2 1 3 29 29 H 1.08999 * 109.47181 * 120.00052 * 2 1 3 30 30 H 1.08003 * 125.58916 * 179.71795 * 5 4 3 31 31 H 1.08001 * 126.17617 * 180.02562 * 6 5 4 32 32 H 1.08002 * 119.99493 * 4.97966 * 8 7 3 33 33 H 1.07991 * 120.00437 * 355.26720 * 9 8 7 34 34 H 1.09007 * 109.47184 * 209.99872 * 13 12 10 35 35 H 1.08996 * 109.47061 * 329.98901 * 13 12 10 36 36 H 0.97001 * 119.99509 * 179.97438 * 17 16 14 37 37 H 1.09004 * 109.46864 * 4.87267 * 22 12 10 38 38 H 1.08994 * 109.47373 * 59.99816 * 23 22 12 39 39 H 1.08991 * 109.47401 * 180.02562 * 23 22 12 40 40 H 1.09007 * 109.46740 * 300.00064 * 23 22 12 41 41 H 1.09001 * 109.47194 * 59.99803 * 24 22 12 42 42 H 1.09003 * 109.47304 * 180.02562 * 24 22 12 43 43 H 1.09004 * 109.47111 * 299.99880 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1976 2.1941 -1.1261 5 6 2.6531 3.3596 -0.7389 6 6 2.7821 3.3536 0.6469 7 6 2.3780 2.1100 1.1004 8 6 2.3469 1.6584 2.4930 9 6 2.6426 2.5222 3.4908 10 6 2.5114 2.1014 4.8844 11 8 2.2240 0.9481 5.1475 12 7 2.7087 2.9902 5.8780 13 6 3.1655 4.3470 5.5672 14 6 1.9723 5.2404 5.3457 15 1 0.9735 4.8377 5.4278 16 6 2.1556 6.5717 5.0371 17 7 3.3718 7.0619 4.9366 18 14 0.6765 7.6789 4.7619 19 1 -0.5705 6.8904 4.9310 20 1 0.6985 8.7886 5.7484 21 1 0.7256 8.2378 3.3869 22 6 2.4663 2.5996 7.2691 23 6 3.7245 2.8620 8.0992 24 6 1.3033 3.4180 7.8334 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.8902 4.1892 -1.3885 31 1 3.1336 4.1718 1.2580 32 1 2.0921 0.6343 2.7229 33 1 2.9755 3.5227 3.2580 34 1 3.7572 4.7306 6.3984 35 1 3.7768 4.3268 4.6650 36 1 3.5007 7.9984 4.7192 37 1 2.2182 1.5390 7.3107 38 1 3.9727 3.9224 8.0575 39 1 3.5444 2.5710 9.1340 40 1 4.5531 2.2788 7.6971 41 1 0.4069 3.2311 7.2421 42 1 1.1232 3.1277 8.8685 43 1 1.5514 4.4786 7.7918 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492225186.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:29 Heat of formation + Delta-G solvation = 47.942445 kcal Electronic energy + Delta-G solvation = -23451.530895 eV Core-core repulsion = 20112.746626 eV Total energy + Delta-G solvation = -3338.784269 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.80276 -39.28452 -35.94078 -34.45360 -33.68421 -32.86000 -31.37184 -29.50254 -28.56724 -27.27238 -26.67084 -24.24964 -23.55875 -23.02034 -21.19407 -20.28939 -18.89011 -17.72470 -17.37575 -16.56448 -16.07282 -15.41239 -15.05201 -14.80089 -14.46459 -14.18674 -14.11245 -13.57517 -13.33833 -13.09415 -12.75673 -12.58198 -12.48428 -12.38830 -12.17778 -11.74568 -11.66727 -11.50681 -11.39602 -11.21570 -11.00043 -10.84130 -10.68722 -10.52415 -10.33500 -10.25327 -9.96744 -9.62900 -9.21259 -8.81635 -8.56268 -8.01463 -7.68600 -6.19587 -4.25627 1.01623 2.47514 2.55870 3.15221 3.21298 3.30747 3.34561 3.79077 4.04552 4.32732 4.50356 4.81985 4.90506 5.03825 5.13321 5.13903 5.26928 5.40962 5.47250 5.59089 5.67844 5.70116 5.82509 5.87582 5.97830 5.99794 6.11148 6.15788 6.16930 6.35999 6.42013 6.53542 6.67026 6.71247 6.80631 6.83912 7.00848 7.14004 7.20322 7.53165 7.75741 7.84750 8.03984 8.28879 8.77605 8.94346 9.41654 10.87026 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012228 B = 0.005363 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.228066 B = 5219.419887 C = 6682.453869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.129 3.871 3 N -0.368 5.368 4 N -0.299 5.299 5 C 0.043 3.957 6 C -0.245 4.245 7 C 0.111 3.889 8 C -0.062 4.062 9 C -0.130 4.130 10 C 0.543 3.457 11 O -0.580 6.580 12 N -0.579 5.579 13 C 0.232 3.768 14 C -0.531 4.531 15 H 0.063 0.937 16 C 0.066 3.934 17 N -0.891 5.891 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.282 1.282 22 C 0.136 3.864 23 C -0.159 4.159 24 C -0.155 4.155 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.183 0.817 31 H 0.157 0.843 32 H 0.131 0.869 33 H 0.148 0.852 34 H 0.043 0.957 35 H 0.038 0.962 36 H 0.264 0.736 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.107 -9.032 -4.363 10.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.008 3.992 3 N -0.153 5.153 4 N -0.122 5.122 5 C -0.141 4.141 6 C -0.273 4.273 7 C -0.015 4.015 8 C -0.083 4.083 9 C -0.153 4.153 10 C 0.333 3.667 11 O -0.464 6.464 12 N -0.309 5.309 13 C 0.112 3.888 14 C -0.570 4.570 15 H 0.081 0.919 16 C -0.137 4.137 17 N -0.529 5.529 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.208 1.208 22 C 0.032 3.968 23 C -0.216 4.216 24 C -0.213 4.213 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.199 0.801 31 H 0.175 0.825 32 H 0.149 0.851 33 H 0.166 0.834 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.536 -10.264 -5.263 11.636 hybrid contribution -0.555 1.490 0.482 1.661 sum -2.091 -8.774 -4.781 10.208 Atomic orbital electron populations 1.22185 0.94311 1.02911 1.03423 1.21654 0.95361 0.77984 1.04217 1.49049 1.51057 1.11695 1.03475 1.77207 1.23161 1.03563 1.08228 1.23630 0.99245 0.95850 0.95326 1.22019 1.12377 0.97924 0.95024 1.20153 1.00796 0.92330 0.88206 1.21255 0.99631 0.99749 0.87706 1.23380 0.98720 1.01152 0.92044 1.18118 0.77572 0.84825 0.86177 1.90700 1.51572 1.18982 1.85159 1.48205 1.63304 1.14274 1.05068 1.19517 0.95639 0.76081 0.97534 1.21531 0.93167 0.93928 1.48348 0.91896 1.24910 0.95842 0.97915 0.95008 1.69927 1.20228 1.14702 1.48048 0.86530 0.82966 0.80581 0.77978 1.19715 1.20942 1.20786 1.20868 0.95013 0.99624 0.81249 1.22120 0.97601 1.02935 0.98992 1.22129 0.97824 1.02505 0.98866 0.91702 0.91694 0.90622 0.89000 0.88739 0.80051 0.82544 0.85106 0.83436 0.93941 0.94412 0.92585 0.89620 0.91369 0.92309 0.92947 0.93005 0.93248 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 10.24 37.16 0.38 -1.33 16 2 C 0.13 1.41 7.05 -4.04 -0.03 1.39 16 3 N -0.37 -5.46 3.67 -57.32 -0.21 -5.67 16 4 N -0.30 -4.70 12.54 30.51 0.38 -4.31 16 5 C 0.04 0.63 11.96 -17.56 -0.21 0.42 16 6 C -0.24 -3.93 10.21 -39.17 -0.40 -4.33 16 7 C 0.11 1.79 6.91 -82.29 -0.57 1.22 16 8 C -0.06 -1.02 9.29 -37.35 -0.35 -1.37 16 9 C -0.13 -2.42 8.73 -37.47 -0.33 -2.75 16 10 C 0.54 11.20 7.58 -13.08 -0.10 11.10 16 11 O -0.58 -12.74 15.59 5.16 0.08 -12.66 16 12 N -0.58 -11.85 2.39 -169.19 -0.40 -12.26 16 13 C 0.23 5.22 4.34 -5.20 -0.02 5.20 16 14 C -0.53 -13.05 7.84 -34.44 -0.27 -13.32 16 15 H 0.06 1.60 7.59 -52.49 -0.40 1.20 16 16 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -23.54 13.29 55.43 0.74 -22.81 16 18 Si 0.89 20.12 29.54 -169.99 -5.02 15.10 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 C 0.14 2.47 3.25 -67.93 -0.22 2.25 16 23 C -0.16 -2.51 9.07 37.16 0.34 -2.17 16 24 C -0.16 -2.71 8.60 37.16 0.32 -2.39 16 25 H 0.06 0.74 8.14 -51.94 -0.42 0.32 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.09 0.91 7.21 -51.93 -0.37 0.54 16 30 H 0.18 2.05 8.06 -52.48 -0.42 1.62 16 31 H 0.16 2.50 7.28 -52.49 -0.38 2.11 16 32 H 0.13 2.05 6.82 -52.49 -0.36 1.69 16 33 H 0.15 2.86 5.14 -52.49 -0.27 2.59 16 34 H 0.04 1.00 6.18 -51.92 -0.32 0.68 16 35 H 0.04 0.88 6.27 -51.93 -0.33 0.56 16 36 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 37 H 0.09 1.59 6.91 -51.93 -0.36 1.23 16 38 H 0.07 1.15 6.52 -51.93 -0.34 0.81 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.08 1.53 6.92 -51.93 -0.36 1.17 16 LS Contribution 357.23 15.07 5.38 5.38 Total: -1.00 -29.12 357.23 -7.03 -36.16 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.43 Total: 5.58 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -1.55 Total: -4.51 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.50 Total: -45.05 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.08 Total: -12.66 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.12 -7.03 -36.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492225186.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.099 kcal (2) G-P(sol) polarization free energy of solvation -29.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds