Wall clock time and date at job start Tue Mar 31 2020 06:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.46921 * 2 1 4 4 N 1.40035 * 126.15303 * 275.17065 * 3 2 1 5 5 C 1.30991 * 108.86151 * 180.27467 * 4 3 2 6 6 C 1.39180 * 108.82777 * 359.74590 * 5 4 3 7 7 C 1.36799 * 126.15140 * 94.99535 * 3 2 1 8 8 C 1.46433 * 126.51775 * 359.97438 * 7 3 2 9 9 C 1.35250 * 119.99936 * 184.70294 * 8 7 3 10 10 C 1.46161 * 119.99555 * 175.26614 * 9 8 7 11 11 O 1.21735 * 120.00127 * 4.97617 * 10 9 8 12 12 N 1.34770 * 119.99713 * 184.97411 * 10 9 8 13 13 C 1.46502 * 120.00066 * 354.79466 * 12 10 9 14 14 C 1.50692 * 109.47377 * 89.99889 * 13 12 10 15 15 H 1.08002 * 120.00557 * 359.97438 * 14 13 12 16 16 C 1.37883 * 120.00082 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99854 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00042 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47410 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47188 * 119.99657 * 18 16 14 21 21 H 1.48507 * 109.47113 * 239.99491 * 18 16 14 22 22 C 1.46504 * 120.00121 * 174.78646 * 12 10 9 23 23 C 1.53001 * 109.47166 * 124.87108 * 22 12 10 24 24 C 1.52997 * 109.47454 * 244.87235 * 22 12 10 25 25 H 1.08986 * 109.47267 * 300.00044 * 1 2 3 26 26 H 1.09003 * 109.46709 * 60.00740 * 1 2 3 27 27 H 1.08998 * 109.46676 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47340 * 239.99896 * 2 1 3 29 29 H 1.08999 * 109.47181 * 120.00052 * 2 1 3 30 30 H 1.08003 * 125.58916 * 179.71795 * 5 4 3 31 31 H 1.08001 * 126.17617 * 180.02562 * 6 5 4 32 32 H 1.08002 * 119.99493 * 4.97966 * 8 7 3 33 33 H 1.07991 * 120.00437 * 355.26720 * 9 8 7 34 34 H 1.09007 * 109.47184 * 209.99872 * 13 12 10 35 35 H 1.08996 * 109.47061 * 329.98901 * 13 12 10 36 36 H 0.97001 * 119.99509 * 179.97438 * 17 16 14 37 37 H 1.09004 * 109.46864 * 4.87267 * 22 12 10 38 38 H 1.08994 * 109.47373 * 59.99816 * 23 22 12 39 39 H 1.08991 * 109.47401 * 180.02562 * 23 22 12 40 40 H 1.09007 * 109.46740 * 300.00064 * 23 22 12 41 41 H 1.09001 * 109.47194 * 59.99803 * 24 22 12 42 42 H 1.09003 * 109.47304 * 180.02562 * 24 22 12 43 43 H 1.09004 * 109.47111 * 299.99880 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1976 2.1941 -1.1261 5 6 2.6531 3.3596 -0.7389 6 6 2.7821 3.3536 0.6469 7 6 2.3780 2.1100 1.1004 8 6 2.3469 1.6584 2.4930 9 6 2.6426 2.5222 3.4908 10 6 2.5114 2.1014 4.8844 11 8 2.2240 0.9481 5.1475 12 7 2.7087 2.9902 5.8780 13 6 3.1655 4.3470 5.5672 14 6 1.9723 5.2404 5.3457 15 1 0.9735 4.8377 5.4278 16 6 2.1556 6.5717 5.0371 17 7 3.3718 7.0619 4.9366 18 14 0.6765 7.6789 4.7619 19 1 -0.5705 6.8904 4.9310 20 1 0.6985 8.7886 5.7484 21 1 0.7256 8.2378 3.3869 22 6 2.4663 2.5996 7.2691 23 6 3.7245 2.8620 8.0992 24 6 1.3033 3.4180 7.8334 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.8902 4.1892 -1.3885 31 1 3.1336 4.1718 1.2580 32 1 2.0921 0.6343 2.7229 33 1 2.9755 3.5227 3.2580 34 1 3.7572 4.7306 6.3984 35 1 3.7768 4.3268 4.6650 36 1 3.5007 7.9984 4.7192 37 1 2.2182 1.5390 7.3107 38 1 3.9727 3.9224 8.0575 39 1 3.5444 2.5710 9.1340 40 1 4.5531 2.2788 7.6971 41 1 0.4069 3.2311 7.2421 42 1 1.1232 3.1277 8.8685 43 1 1.5514 4.4786 7.7918 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492225186.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:29 Heat of formation + Delta-G solvation = 32.733246 kcal Electronic energy + Delta-G solvation = -23452.190415 eV Core-core repulsion = 20112.746626 eV Total energy + Delta-G solvation = -3339.443789 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.99989 -40.88145 -37.53192 -35.45933 -35.18149 -34.61258 -32.94356 -30.57591 -29.85067 -29.12470 -28.03426 -25.56150 -24.89998 -24.59366 -22.50313 -21.51206 -20.21247 -19.29459 -18.77550 -18.48814 -17.44616 -16.96906 -16.34179 -16.13619 -15.87936 -15.73883 -15.27332 -14.94747 -14.72863 -14.31625 -14.26068 -14.14643 -13.90442 -13.48770 -13.37399 -13.25682 -13.03592 -12.91594 -12.74924 -12.70018 -12.47900 -12.27195 -12.23213 -12.05018 -11.72667 -11.61803 -11.58012 -11.42501 -10.86164 -10.50302 -9.98694 -9.50665 -9.19199 -8.14791 -6.25819 -0.36493 1.21831 1.40907 1.44900 1.46274 1.54398 1.87184 2.24943 2.46948 2.50533 3.16336 3.45357 3.56074 3.87381 4.01592 4.06273 4.12021 4.23215 4.29511 4.32719 4.44161 4.48999 4.69509 4.72370 4.76157 4.84421 4.87764 4.89395 4.94833 5.02150 5.10262 5.14070 5.15274 5.22335 5.36244 5.46127 5.52340 5.67006 5.74566 5.91916 5.98554 6.12337 6.58250 6.65537 6.86871 7.28183 7.45438 8.91049 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012228 B = 0.005363 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.228066 B = 5219.419887 C = 6682.453869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.117 3.883 3 N -0.365 5.365 4 N -0.310 5.310 5 C 0.042 3.958 6 C -0.256 4.256 7 C 0.091 3.909 8 C -0.026 4.026 9 C -0.160 4.160 10 C 0.541 3.459 11 O -0.598 6.598 12 N -0.584 5.584 13 C 0.249 3.751 14 C -0.528 4.528 15 H 0.052 0.948 16 C 0.027 3.973 17 N -0.918 5.918 18 Si 0.945 3.055 19 H -0.275 1.275 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.127 3.873 23 C -0.150 4.150 24 C -0.146 4.146 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.105 0.895 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.213 0.787 31 H 0.150 0.850 32 H 0.143 0.857 33 H 0.136 0.864 34 H 0.032 0.968 35 H 0.027 0.973 36 H 0.266 0.734 37 H 0.085 0.915 38 H 0.053 0.947 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.036 0.964 42 H 0.083 0.917 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.751 -9.941 -4.740 11.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.003 4.003 3 N -0.149 5.149 4 N -0.133 5.133 5 C -0.140 4.140 6 C -0.285 4.285 7 C -0.035 4.035 8 C -0.047 4.047 9 C -0.183 4.183 10 C 0.332 3.668 11 O -0.483 6.483 12 N -0.312 5.312 13 C 0.128 3.872 14 C -0.567 4.567 15 H 0.070 0.930 16 C -0.173 4.173 17 N -0.557 5.557 18 Si 0.771 3.229 19 H -0.199 1.199 20 H -0.205 1.205 21 H -0.206 1.206 22 C 0.024 3.976 23 C -0.207 4.207 24 C -0.204 4.204 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.124 0.876 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.229 0.771 31 H 0.168 0.832 32 H 0.161 0.839 33 H 0.153 0.847 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.072 0.928 39 H 0.108 0.892 40 H 0.070 0.930 41 H 0.055 0.945 42 H 0.102 0.898 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.189 -11.187 -5.632 12.715 hybrid contribution -0.371 1.680 0.521 1.797 sum -2.560 -9.507 -5.112 11.094 Atomic orbital electron populations 1.22147 0.93529 1.04464 1.02026 1.22070 0.96006 0.76325 1.05902 1.49394 1.50196 1.12661 1.02670 1.77177 1.23260 1.04035 1.08800 1.24100 0.98469 0.96411 0.95063 1.22174 1.12445 0.97933 0.95914 1.20142 1.02042 0.92955 0.88372 1.21328 0.96229 0.99625 0.87549 1.23115 1.02181 1.01291 0.91685 1.18356 0.77054 0.84584 0.86813 1.90673 1.52690 1.19400 1.85535 1.48228 1.63312 1.13438 1.06268 1.19158 0.94661 0.76880 0.96507 1.21615 0.93156 0.94283 1.47644 0.93019 1.25485 0.97743 0.99045 0.95038 1.70002 1.21601 1.15039 1.49096 0.85708 0.80297 0.79046 0.77839 1.19928 1.20550 1.20591 1.21115 0.96436 0.99572 0.80431 1.22047 0.96339 1.01967 1.00390 1.22040 0.96777 1.00951 1.00664 0.93437 0.92628 0.87626 0.87102 0.87323 0.77096 0.83195 0.83901 0.84674 0.94978 0.95487 0.92469 0.89683 0.92807 0.89156 0.92964 0.94511 0.89833 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 10.24 71.98 0.74 -2.23 16 2 C 0.12 2.30 7.05 86.38 0.61 2.91 16 3 N -0.36 -10.28 3.67 -335.27 -1.23 -11.51 16 4 N -0.31 -9.25 12.54 -57.39 -0.72 -9.97 16 5 C 0.04 1.18 11.96 85.04 1.02 2.20 16 6 C -0.26 -8.13 10.21 22.53 0.23 -7.90 16 7 C 0.09 2.89 6.91 40.54 0.28 3.17 16 8 C -0.03 -0.84 9.29 23.72 0.22 -0.62 16 9 C -0.16 -6.06 8.73 23.64 0.21 -5.85 16 10 C 0.54 22.53 7.58 86.30 0.65 23.18 16 11 O -0.60 -26.13 15.59 -4.46 -0.07 -26.20 16 12 N -0.58 -24.20 2.39 -807.41 -1.93 -26.13 16 13 C 0.25 11.46 4.34 85.63 0.37 11.83 16 14 C -0.53 -26.38 7.84 25.60 0.20 -26.18 16 15 H 0.05 2.67 7.59 -2.91 -0.02 2.65 16 16 C 0.03 1.39 5.46 84.66 0.46 1.85 16 17 N -0.92 -49.01 13.29 21.45 0.28 -48.72 16 18 Si 0.94 41.37 29.54 68.60 2.03 43.40 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 21 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 22 C 0.13 4.56 3.25 44.99 0.15 4.71 16 23 C -0.15 -4.57 9.07 71.98 0.65 -3.92 16 24 C -0.15 -5.02 8.60 71.98 0.62 -4.40 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.11 1.27 8.14 -2.39 -0.02 1.26 16 28 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.11 1.84 7.21 -2.39 -0.02 1.82 16 30 H 0.21 4.35 8.06 -2.91 -0.02 4.32 16 31 H 0.15 4.90 7.28 -2.91 -0.02 4.88 16 32 H 0.14 4.30 6.82 -2.91 -0.02 4.28 16 33 H 0.14 5.47 5.14 -2.92 -0.01 5.45 16 34 H 0.03 1.55 6.18 -2.38 -0.01 1.54 16 35 H 0.03 1.31 6.27 -2.39 -0.01 1.30 16 36 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 37 H 0.09 3.08 6.91 -2.39 -0.02 3.06 16 38 H 0.05 1.80 6.52 -2.39 -0.02 1.78 16 39 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 41 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.06 2.22 6.92 -2.39 -0.02 2.20 16 Total: -1.00 -61.77 357.23 5.77 -56.00 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 1.00 Total: 24.38 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 6.41 Total: -1.25 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -3.59 Total: -96.33 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.07 Total: -26.20 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -61.77 5.77 -56.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492225186.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.737 kcal (2) G-P(sol) polarization free energy of solvation -61.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds