Wall clock time and date at job start Tue Mar 31 2020 06:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47183 * 2 1 4 4 N 1.40047 * 126.15227 * 275.06043 * 3 2 1 5 5 C 1.30990 * 108.85988 * 180.28388 * 4 3 2 6 6 C 1.39177 * 108.82987 * 359.76162 * 5 4 3 7 7 C 1.36804 * 126.15803 * 94.92988 * 3 2 1 8 8 C 1.46432 * 126.51028 * 359.97438 * 7 3 2 9 9 C 1.35254 * 120.00079 * 184.74551 * 8 7 3 10 10 C 1.46151 * 119.99984 * 185.18809 * 9 8 7 11 11 O 1.21729 * 120.00192 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99649 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99829 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47161 * 179.72451 * 13 12 10 15 15 C 1.53002 * 109.46942 * 299.99710 * 14 13 12 16 16 C 1.52994 * 109.46938 * 60.00016 * 14 13 12 17 17 C 1.50702 * 109.47110 * 179.97438 * 14 13 12 18 18 H 1.08008 * 119.99854 * 1.59862 * 17 14 13 19 19 C 1.37870 * 119.99954 * 181.59399 * 17 14 13 20 20 N 1.31518 * 120.00215 * 193.71848 * 19 17 14 21 21 Si 1.86803 * 120.00072 * 13.72138 * 19 17 14 22 22 H 1.48503 * 109.47095 * 84.92259 * 21 19 17 23 23 H 1.48496 * 109.47131 * 204.92229 * 21 19 17 24 24 H 1.48500 * 109.47146 * 324.92563 * 21 19 17 25 25 H 1.09004 * 109.46722 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47166 * 300.00071 * 1 2 3 27 27 H 1.08993 * 109.47189 * 60.00353 * 1 2 3 28 28 H 1.08996 * 109.47166 * 239.99929 * 2 1 3 29 29 H 1.09003 * 109.47173 * 119.99678 * 2 1 3 30 30 H 1.07995 * 125.58487 * 179.73892 * 5 4 3 31 31 H 1.07999 * 126.17634 * 180.02562 * 6 5 4 32 32 H 1.08004 * 120.00395 * 4.74337 * 8 7 3 33 33 H 1.07998 * 119.99397 * 5.19325 * 9 8 7 34 34 H 0.96998 * 120.00237 * 359.72628 * 12 10 9 35 35 H 1.09002 * 109.47071 * 299.72499 * 13 12 10 36 36 H 1.08997 * 109.47371 * 59.72526 * 13 12 10 37 37 H 1.08996 * 109.47161 * 68.85578 * 15 14 13 38 38 H 1.08997 * 109.46856 * 188.85561 * 15 14 13 39 39 H 1.08993 * 109.47131 * 308.85226 * 15 14 13 40 40 H 1.08997 * 109.47902 * 60.00031 * 16 14 13 41 41 H 1.09007 * 109.47123 * 180.02562 * 16 14 13 42 42 H 1.09006 * 109.47206 * 299.99894 * 16 14 13 43 43 H 0.96999 * 120.00401 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1997 2.1933 -1.1264 5 6 2.6548 3.3590 -0.7391 6 6 2.7818 3.3537 0.6469 7 6 2.3769 2.1105 1.1005 8 6 2.3443 1.6594 2.4932 9 6 2.6381 2.5238 3.4911 10 6 2.7167 2.0477 4.8707 11 8 2.5181 0.8732 5.1216 12 7 3.0089 2.9092 5.8651 13 6 3.0882 2.4320 7.2479 14 6 3.4387 3.6005 8.1714 15 6 4.7883 4.1906 7.7574 16 6 2.3569 4.6770 8.0647 17 6 3.5197 3.1097 9.5940 18 1 3.3647 2.0637 9.8140 19 6 3.7918 3.9958 10.6145 20 7 4.1285 3.5462 11.8037 21 14 3.6819 5.8353 10.3083 22 1 2.2769 6.2833 10.4833 23 1 4.5535 6.5509 11.2744 24 1 4.1279 6.1342 8.9237 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.8928 4.1882 -1.3888 31 1 3.1324 4.1722 1.2580 32 1 2.0855 0.6364 2.7236 33 1 2.8146 3.5657 3.2684 34 1 3.1711 3.8443 5.6647 35 1 2.1268 2.0115 7.5429 36 1 3.8589 1.6650 7.3240 37 1 4.6876 4.6853 6.7914 38 1 5.1126 4.9150 8.5045 39 1 5.5261 3.3920 7.6815 40 1 1.3955 4.2567 8.3596 41 1 2.6069 5.5097 8.7223 42 1 2.2979 5.0321 7.0358 43 1 4.3203 4.1696 12.5216 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493015138.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:18 Heat of formation + Delta-G solvation = 63.752863 kcal Electronic energy + Delta-G solvation = -22576.248029 eV Core-core repulsion = 19238.149351 eV Total energy + Delta-G solvation = -3338.098678 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.26171 -39.47436 -36.84013 -34.82003 -34.04040 -33.36228 -31.53209 -29.95830 -29.21498 -26.49292 -26.30531 -25.05529 -24.25984 -23.38419 -21.35369 -20.21790 -19.42295 -18.77235 -17.77747 -16.50134 -16.10609 -15.50530 -15.47094 -15.14096 -15.08958 -14.84474 -14.48622 -13.84885 -13.47897 -13.39458 -13.25275 -12.92992 -12.88626 -12.64020 -12.48133 -12.24878 -12.06980 -11.92858 -11.70486 -11.38237 -10.95977 -10.74665 -10.47563 -10.35538 -10.20313 -10.09696 -9.73685 -9.27269 -9.15104 -8.70918 -8.67584 -8.50001 -8.39203 -6.17068 -4.14831 0.47763 2.04772 2.12683 2.66885 3.22027 3.28875 3.37004 3.48950 3.55130 4.16076 4.33183 4.38701 4.59771 4.66318 4.73950 4.86239 5.05778 5.13292 5.13800 5.30420 5.36797 5.49856 5.54965 5.68505 5.70837 5.96273 6.02031 6.02825 6.10533 6.32561 6.35717 6.44755 6.48790 6.59285 6.65961 6.67618 6.72381 6.92296 7.18146 7.39565 7.41055 7.69013 7.85416 8.40736 8.50135 8.88003 9.46566 10.96021 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.031941 B = 0.002829 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.395553 B = 9894.743218 C =10416.609343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.125 3.875 3 N -0.362 5.362 4 N -0.290 5.290 5 C 0.042 3.958 6 C -0.247 4.247 7 C 0.102 3.898 8 C -0.033 4.033 9 C -0.161 4.161 10 C 0.535 3.465 11 O -0.550 6.550 12 N -0.712 5.712 13 C 0.141 3.859 14 C 0.028 3.972 15 C -0.143 4.143 16 C -0.149 4.149 17 C -0.514 4.514 18 H 0.077 0.923 19 C 0.075 3.925 20 N -0.891 5.891 21 Si 0.886 3.114 22 H -0.286 1.286 23 H -0.305 1.305 24 H -0.248 1.248 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.185 0.815 31 H 0.153 0.847 32 H 0.139 0.861 33 H 0.133 0.867 34 H 0.398 0.602 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.022 0.978 38 H 0.056 0.944 39 H 0.047 0.953 40 H 0.053 0.947 41 H 0.042 0.958 42 H 0.030 0.970 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.093 -0.382 -23.340 23.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.004 3.996 3 N -0.146 5.146 4 N -0.112 5.112 5 C -0.142 4.142 6 C -0.276 4.276 7 C -0.025 4.025 8 C -0.055 4.055 9 C -0.184 4.184 10 C 0.323 3.677 11 O -0.431 6.431 12 N -0.362 5.362 13 C 0.018 3.982 14 C 0.027 3.973 15 C -0.200 4.200 16 C -0.205 4.205 17 C -0.552 4.552 18 H 0.095 0.905 19 C -0.127 4.127 20 N -0.528 5.528 21 Si 0.718 3.282 22 H -0.214 1.214 23 H -0.234 1.234 24 H -0.174 1.174 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.202 0.798 31 H 0.170 0.830 32 H 0.157 0.843 33 H 0.150 0.850 34 H 0.233 0.767 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.041 0.959 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.049 0.951 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.577 -2.044 -23.960 24.478 hybrid contribution 0.218 2.080 0.645 2.189 sum -4.360 0.036 -23.314 23.718 Atomic orbital electron populations 1.22188 0.93965 1.03319 1.03362 1.21765 0.95580 0.77539 1.04700 1.49163 1.50166 1.11906 1.03358 1.77293 1.22320 1.03418 1.08165 1.23669 0.99280 0.96026 0.95190 1.21896 1.12915 0.97631 0.95128 1.20162 1.01487 0.92491 0.88314 1.21392 0.96085 1.00411 0.87616 1.23084 1.02208 1.00476 0.92670 1.18137 0.78044 0.86149 0.85419 1.90813 1.50624 1.16941 1.84695 1.46226 1.69487 1.12033 1.08430 1.21557 1.01426 0.97708 0.77471 1.18724 0.91511 0.91247 0.95808 1.22304 0.99108 1.00297 0.98336 1.22372 1.00607 0.99350 0.98210 1.20716 1.49661 0.96825 0.87984 0.90530 1.24976 0.93883 0.98822 0.95054 1.69947 1.44821 1.35170 1.02832 0.87292 0.77281 0.86181 0.77425 1.21351 1.23400 1.17448 0.90262 0.91768 0.91590 0.88616 0.88439 0.79843 0.82971 0.84344 0.84963 0.76654 0.91786 0.91689 0.95881 0.92482 0.93351 0.92753 0.93993 0.95122 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.24 37.16 0.38 -0.77 16 2 C 0.13 0.95 7.05 -4.04 -0.03 0.92 16 3 N -0.36 -3.83 3.67 -57.33 -0.21 -4.04 16 4 N -0.29 -3.32 12.54 30.51 0.38 -2.94 16 5 C 0.04 0.40 11.96 -17.56 -0.21 0.19 16 6 C -0.25 -2.40 10.20 -39.18 -0.40 -2.80 16 7 C 0.10 1.09 6.91 -82.29 -0.57 0.52 16 8 C -0.03 -0.37 9.29 -37.35 -0.35 -0.71 16 9 C -0.16 -1.84 9.53 -37.47 -0.36 -2.19 16 10 C 0.54 8.27 7.73 -13.09 -0.10 8.17 16 11 O -0.55 -10.52 16.24 5.16 0.08 -10.43 16 12 N -0.71 -11.09 5.00 -61.79 -0.31 -11.40 16 13 C 0.14 2.73 4.49 -4.04 -0.02 2.71 16 14 C 0.03 0.60 0.50 -155.66 -0.08 0.52 16 15 C -0.14 -2.82 7.55 37.16 0.28 -2.54 16 16 C -0.15 -2.92 7.51 37.15 0.28 -2.64 16 17 C -0.51 -13.58 8.62 -34.44 -0.30 -13.88 16 18 H 0.08 2.23 7.99 -52.48 -0.42 1.81 16 19 C 0.08 2.07 5.33 -17.82 -0.09 1.97 16 20 N -0.89 -26.40 13.96 55.43 0.77 -25.62 16 21 Si 0.89 20.75 22.80 -169.99 -3.87 16.88 16 22 H -0.29 -6.68 7.10 56.52 0.40 -6.28 16 23 H -0.31 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.25 -5.25 4.63 56.52 0.26 -4.99 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.10 0.63 7.22 -51.93 -0.37 0.25 16 30 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.15 1.16 7.33 -52.49 -0.38 0.77 16 32 H 0.14 1.53 6.83 -52.48 -0.36 1.18 16 33 H 0.13 1.15 6.97 -52.49 -0.37 0.78 16 34 H 0.40 5.27 6.23 -40.82 -0.25 5.02 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.02 0.37 7.11 -51.93 -0.37 0.00 16 38 H 0.06 1.21 4.30 -51.93 -0.22 0.98 16 39 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.04 0.88 2.23 -51.93 -0.12 0.76 16 42 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 344.50 15.07 5.19 5.19 Total: -1.00 -32.57 344.50 -5.82 -38.40 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.30 Total: 4.52 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -1.56 Total: -10.54 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.64 Total: -44.01 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -3.87 Total: 16.88 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.57 -5.82 -38.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493015138.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.149 kcal (2) G-P(sol) polarization free energy of solvation -32.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds