Wall clock time and date at job start Tue Mar 31 2020 06:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47183 * 2 1 4 4 N 1.40047 * 126.15227 * 275.06043 * 3 2 1 5 5 C 1.30990 * 108.85988 * 180.28388 * 4 3 2 6 6 C 1.39177 * 108.82987 * 359.76162 * 5 4 3 7 7 C 1.36804 * 126.15803 * 94.92988 * 3 2 1 8 8 C 1.46432 * 126.51028 * 359.97438 * 7 3 2 9 9 C 1.35254 * 120.00079 * 184.74551 * 8 7 3 10 10 C 1.46151 * 119.99984 * 185.18809 * 9 8 7 11 11 O 1.21729 * 120.00192 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99649 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99829 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47161 * 179.72451 * 13 12 10 15 15 C 1.53002 * 109.46942 * 299.99710 * 14 13 12 16 16 C 1.52994 * 109.46938 * 60.00016 * 14 13 12 17 17 C 1.50702 * 109.47110 * 179.97438 * 14 13 12 18 18 H 1.08008 * 119.99854 * 1.59862 * 17 14 13 19 19 C 1.37870 * 119.99954 * 181.59399 * 17 14 13 20 20 N 1.31518 * 120.00215 * 193.71848 * 19 17 14 21 21 Si 1.86803 * 120.00072 * 13.72138 * 19 17 14 22 22 H 1.48503 * 109.47095 * 84.92259 * 21 19 17 23 23 H 1.48496 * 109.47131 * 204.92229 * 21 19 17 24 24 H 1.48500 * 109.47146 * 324.92563 * 21 19 17 25 25 H 1.09004 * 109.46722 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47166 * 300.00071 * 1 2 3 27 27 H 1.08993 * 109.47189 * 60.00353 * 1 2 3 28 28 H 1.08996 * 109.47166 * 239.99929 * 2 1 3 29 29 H 1.09003 * 109.47173 * 119.99678 * 2 1 3 30 30 H 1.07995 * 125.58487 * 179.73892 * 5 4 3 31 31 H 1.07999 * 126.17634 * 180.02562 * 6 5 4 32 32 H 1.08004 * 120.00395 * 4.74337 * 8 7 3 33 33 H 1.07998 * 119.99397 * 5.19325 * 9 8 7 34 34 H 0.96998 * 120.00237 * 359.72628 * 12 10 9 35 35 H 1.09002 * 109.47071 * 299.72499 * 13 12 10 36 36 H 1.08997 * 109.47371 * 59.72526 * 13 12 10 37 37 H 1.08996 * 109.47161 * 68.85578 * 15 14 13 38 38 H 1.08997 * 109.46856 * 188.85561 * 15 14 13 39 39 H 1.08993 * 109.47131 * 308.85226 * 15 14 13 40 40 H 1.08997 * 109.47902 * 60.00031 * 16 14 13 41 41 H 1.09007 * 109.47123 * 180.02562 * 16 14 13 42 42 H 1.09006 * 109.47206 * 299.99894 * 16 14 13 43 43 H 0.96999 * 120.00401 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1997 2.1933 -1.1264 5 6 2.6548 3.3590 -0.7391 6 6 2.7818 3.3537 0.6469 7 6 2.3769 2.1105 1.1005 8 6 2.3443 1.6594 2.4932 9 6 2.6381 2.5238 3.4911 10 6 2.7167 2.0477 4.8707 11 8 2.5181 0.8732 5.1216 12 7 3.0089 2.9092 5.8651 13 6 3.0882 2.4320 7.2479 14 6 3.4387 3.6005 8.1714 15 6 4.7883 4.1906 7.7574 16 6 2.3569 4.6770 8.0647 17 6 3.5197 3.1097 9.5940 18 1 3.3647 2.0637 9.8140 19 6 3.7918 3.9958 10.6145 20 7 4.1285 3.5462 11.8037 21 14 3.6819 5.8353 10.3083 22 1 2.2769 6.2833 10.4833 23 1 4.5535 6.5509 11.2744 24 1 4.1279 6.1342 8.9237 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.8928 4.1882 -1.3888 31 1 3.1324 4.1722 1.2580 32 1 2.0855 0.6364 2.7236 33 1 2.8146 3.5657 3.2684 34 1 3.1711 3.8443 5.6647 35 1 2.1268 2.0115 7.5429 36 1 3.8589 1.6650 7.3240 37 1 4.6876 4.6853 6.7914 38 1 5.1126 4.9150 8.5045 39 1 5.5261 3.3920 7.6815 40 1 1.3955 4.2567 8.3596 41 1 2.6069 5.5097 8.7223 42 1 2.2979 5.0321 7.0358 43 1 4.3203 4.1696 12.5216 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493015138.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:17 Heat of formation + Delta-G solvation = 40.912628 kcal Electronic energy + Delta-G solvation = -22577.238456 eV Core-core repulsion = 19238.149351 eV Total energy + Delta-G solvation = -3339.089105 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.99019 -40.78530 -38.43948 -35.45736 -34.98805 -34.93873 -33.41103 -30.67992 -30.01886 -28.01548 -27.74478 -26.98350 -25.03859 -24.34681 -22.20503 -21.22659 -20.95112 -19.85484 -18.73573 -18.04662 -17.52711 -16.90584 -16.66128 -16.31985 -16.09359 -15.84244 -15.21727 -15.07340 -14.92934 -14.64426 -14.38862 -14.21923 -14.18616 -13.92744 -13.72408 -13.47952 -13.09185 -12.93538 -12.71718 -12.37792 -12.27956 -12.13912 -11.93727 -11.74516 -11.71673 -11.60022 -11.11961 -10.95034 -10.60491 -10.36214 -10.09991 -9.91608 -9.25235 -8.28793 -6.30858 -0.38829 1.23523 1.38666 1.39804 1.45478 1.53118 1.90241 2.32660 2.36586 2.42168 3.07697 3.49764 3.56843 3.90679 4.04256 4.07040 4.12246 4.16121 4.31034 4.35128 4.43981 4.46421 4.70040 4.74543 4.77097 4.85660 4.86051 4.88847 4.89669 4.96399 5.09325 5.13455 5.16345 5.20249 5.30694 5.45073 5.56271 5.71031 5.74136 5.82365 5.97268 6.31559 6.65131 6.69468 6.74631 7.29275 7.34447 8.88520 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.031941 B = 0.002829 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.395553 B = 9894.743218 C =10416.609343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.116 3.884 3 N -0.369 5.369 4 N -0.318 5.318 5 C 0.038 3.962 6 C -0.242 4.242 7 C 0.082 3.918 8 C -0.018 4.018 9 C -0.163 4.163 10 C 0.536 3.464 11 O -0.595 6.595 12 N -0.701 5.701 13 C 0.156 3.844 14 C 0.028 3.972 15 C -0.142 4.142 16 C -0.149 4.149 17 C -0.519 4.519 18 H 0.026 0.974 19 C 0.015 3.985 20 N -0.948 5.948 21 Si 0.945 3.055 22 H -0.282 1.282 23 H -0.317 1.317 24 H -0.199 1.199 25 H 0.099 0.901 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.214 0.786 31 H 0.178 0.822 32 H 0.131 0.869 33 H 0.170 0.830 34 H 0.415 0.585 35 H 0.043 0.957 36 H 0.041 0.959 37 H 0.070 0.930 38 H 0.045 0.955 39 H 0.039 0.961 40 H 0.045 0.955 41 H 0.035 0.965 42 H 0.078 0.922 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.136 2.374 -26.646 27.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.004 4.004 3 N -0.154 5.154 4 N -0.141 5.141 5 C -0.145 4.145 6 C -0.271 4.271 7 C -0.044 4.044 8 C -0.039 4.039 9 C -0.186 4.186 10 C 0.325 3.675 11 O -0.478 6.478 12 N -0.352 5.352 13 C 0.032 3.968 14 C 0.026 3.974 15 C -0.200 4.200 16 C -0.205 4.205 17 C -0.557 4.557 18 H 0.045 0.955 19 C -0.182 4.182 20 N -0.588 5.588 21 Si 0.775 3.225 22 H -0.210 1.210 23 H -0.247 1.247 24 H -0.123 1.123 25 H 0.118 0.882 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.231 0.769 31 H 0.195 0.805 32 H 0.148 0.852 33 H 0.187 0.813 34 H 0.253 0.747 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.096 0.904 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.625 0.727 -27.322 27.721 hybrid contribution 0.206 1.032 1.608 1.922 sum -4.419 1.760 -25.715 26.151 Atomic orbital electron populations 1.22132 0.93439 1.04317 1.02219 1.22000 0.96036 0.76777 1.05585 1.49422 1.50207 1.12607 1.03152 1.77260 1.23268 1.04476 1.09054 1.24243 0.98250 0.96170 0.95818 1.22300 1.11684 0.97676 0.95467 1.20238 1.02725 0.93349 0.88068 1.21375 0.94507 1.00050 0.87998 1.22926 1.03689 1.02189 0.89764 1.18733 0.76586 0.85352 0.86783 1.90802 1.52477 1.19024 1.85542 1.45927 1.69673 1.12945 1.06648 1.21051 0.99519 0.96591 0.79640 1.18656 0.93612 0.92448 0.92645 1.22231 0.97345 1.00036 1.00352 1.22311 0.99166 0.98042 1.01000 1.21064 1.48429 0.94735 0.91468 0.95538 1.25893 0.93536 1.04293 0.94516 1.70118 1.47327 1.37036 1.04303 0.86331 0.77226 0.79423 0.79570 1.20966 1.24698 1.12287 0.88248 0.92914 0.92541 0.87711 0.87606 0.76936 0.80484 0.85170 0.81302 0.74670 0.93815 0.94047 0.91128 0.93640 0.94135 0.93547 0.94701 0.90364 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 10.24 71.98 0.74 -1.30 16 2 C 0.12 1.62 7.05 86.38 0.61 2.23 16 3 N -0.37 -7.20 3.67 -335.28 -1.23 -8.43 16 4 N -0.32 -6.67 12.54 -57.40 -0.72 -7.39 16 5 C 0.04 0.61 11.96 85.04 1.02 1.63 16 6 C -0.24 -3.83 10.20 22.53 0.23 -3.60 16 7 C 0.08 1.56 6.91 40.54 0.28 1.84 16 8 C -0.02 -0.35 9.29 23.72 0.22 -0.13 16 9 C -0.16 -3.18 9.53 23.64 0.23 -2.95 16 10 C 0.54 15.52 7.73 86.30 0.67 16.18 16 11 O -0.60 -22.70 16.24 -4.44 -0.07 -22.77 16 12 N -0.70 -19.91 5.00 -467.59 -2.34 -22.24 16 13 C 0.16 6.00 4.49 86.38 0.39 6.39 16 14 C 0.03 1.13 0.50 -52.93 -0.03 1.10 16 15 C -0.14 -5.15 7.55 71.98 0.54 -4.61 16 16 C -0.15 -5.30 7.51 71.98 0.54 -4.75 16 17 C -0.52 -28.27 8.62 25.60 0.22 -28.05 16 18 H 0.03 1.65 7.99 -2.91 -0.02 1.62 16 19 C 0.01 0.83 5.33 84.65 0.45 1.28 16 20 N -0.95 -58.66 13.96 21.45 0.30 -58.36 16 21 Si 0.95 41.93 22.80 68.60 1.56 43.50 16 22 H -0.28 -12.30 7.10 99.48 0.71 -11.59 16 23 H -0.32 -14.63 7.11 99.48 0.71 -13.93 16 24 H -0.20 -7.30 4.63 99.48 0.46 -6.84 16 25 H 0.10 0.80 8.14 -2.39 -0.02 0.79 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.11 1.26 7.22 -2.39 -0.02 1.24 16 30 H 0.21 1.85 8.06 -2.91 -0.02 1.83 16 31 H 0.18 1.77 7.33 -2.91 -0.02 1.75 16 32 H 0.13 2.77 6.83 -2.91 -0.02 2.75 16 33 H 0.17 2.01 6.97 -2.91 -0.02 1.99 16 34 H 0.42 8.86 6.23 -92.71 -0.58 8.28 16 35 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 1.89 7.11 -2.39 -0.02 1.87 16 38 H 0.04 1.75 4.30 -2.39 -0.01 1.74 16 39 H 0.04 1.51 8.12 -2.39 -0.02 1.49 16 40 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.03 1.31 2.23 -2.38 -0.01 1.30 16 42 H 0.08 2.05 6.86 -2.38 -0.02 2.03 16 43 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -75.28 344.50 3.80 -71.48 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.20 Total: 18.97 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: 6.10 Total: -14.74 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: -3.99 Total: -96.44 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.07 Total: -22.77 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.56 Total: 43.50 kcal Total: -75.28 3.80 -71.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493015138.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.390 kcal (2) G-P(sol) polarization free energy of solvation -75.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds