Wall clock time and date at job start Tue Mar 31 2020 06:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46491 * 109.47447 * 2 1 4 4 C 1.36247 * 126.51005 * 265.13544 * 3 2 1 5 5 C 1.35514 * 107.10379 * 180.24550 * 4 3 2 6 6 N 1.33167 * 108.44680 * 359.77543 * 5 4 3 7 7 C 1.31889 * 109.21799 * 359.97438 * 6 5 4 8 8 C 1.46525 * 125.87633 * 179.97438 * 7 6 5 9 9 C 1.35173 * 120.00111 * 44.10427 * 8 7 6 10 10 C 1.46317 * 119.99911 * 7.86026 * 9 8 7 11 11 O 1.21716 * 120.00219 * 6.52382 * 10 9 8 12 12 N 1.34778 * 120.00155 * 186.52841 * 10 9 8 13 13 C 1.46500 * 120.00361 * 179.97438 * 12 10 9 14 14 C 1.52990 * 109.47228 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47348 * 299.99954 * 14 13 12 16 16 C 1.53005 * 109.47393 * 59.99677 * 14 13 12 17 17 C 1.50696 * 109.47483 * 180.02562 * 14 13 12 18 18 H 1.08007 * 119.99408 * 359.97438 * 17 14 13 19 19 C 1.37881 * 120.00632 * 180.02562 * 17 14 13 20 20 N 1.31506 * 119.99603 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 120.00202 * 179.97438 * 19 17 14 22 22 H 1.48504 * 109.47124 * 89.99749 * 21 19 17 23 23 H 1.48499 * 109.47006 * 209.99858 * 21 19 17 24 24 H 1.48496 * 109.47126 * 329.99894 * 21 19 17 25 25 H 1.08996 * 109.47124 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47031 * 299.99969 * 1 2 3 27 27 H 1.09000 * 109.46971 * 59.99328 * 1 2 3 28 28 H 1.09001 * 109.47031 * 240.00031 * 2 1 3 29 29 H 1.09000 * 109.46971 * 120.00672 * 2 1 3 30 30 H 1.08007 * 126.44367 * 0.02562 * 4 3 2 31 31 H 1.08005 * 125.77488 * 179.77162 * 5 4 3 32 32 H 1.08007 * 119.99908 * 224.10594 * 8 7 6 33 33 H 1.08000 * 120.00009 * 187.85687 * 9 8 7 34 34 H 0.96998 * 119.99609 * 359.97438 * 12 10 9 35 35 H 1.08996 * 109.46892 * 300.00406 * 13 12 10 36 36 H 1.09003 * 109.46895 * 59.99553 * 13 12 10 37 37 H 1.09003 * 109.47382 * 59.99823 * 15 14 13 38 38 H 1.09002 * 109.47588 * 179.97438 * 15 14 13 39 39 H 1.09002 * 109.47555 * 299.99911 * 15 14 13 40 40 H 1.09001 * 109.46171 * 60.00087 * 16 14 13 41 41 H 1.08997 * 109.47211 * 179.97438 * 16 14 13 42 42 H 1.08995 * 109.47352 * 300.00405 * 16 14 13 43 43 H 0.97000 * 120.00184 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3762 2.1144 -1.0911 5 6 2.7715 3.3303 -0.6420 6 7 2.6561 3.3475 0.6845 7 6 2.1990 2.1807 1.0957 8 6 1.9363 1.8032 2.4869 9 6 1.3019 2.6649 3.3128 10 6 0.7256 3.8995 2.7793 11 8 0.7119 4.0953 1.5781 12 7 0.2101 4.8199 3.6180 13 6 -0.3664 6.0563 3.0840 14 6 -0.8770 6.9211 4.2382 15 6 -1.9480 6.1533 5.0157 16 6 0.2853 7.2624 5.1728 17 6 -1.4706 8.1926 3.6889 18 1 -1.4821 8.3667 2.6230 19 6 -1.9981 9.1342 4.5469 20 7 -1.9837 8.9224 5.8447 21 14 -2.7333 10.7107 3.8659 22 1 -4.1796 10.5070 3.5979 23 1 -2.5625 11.8044 4.8557 24 1 -2.0421 11.0738 2.6027 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.3528 1.7868 -2.1201 31 1 3.1211 4.1471 -1.2561 32 1 2.2496 0.8363 2.8524 33 1 1.2204 2.4421 4.3664 34 1 0.2208 4.6637 4.5753 35 1 0.3964 6.6030 2.5297 36 1 -1.1947 5.8131 2.4185 37 1 -1.5191 5.2334 5.4131 38 1 -2.3115 6.7692 5.8383 39 1 -2.7761 5.9101 4.3500 40 1 1.0482 7.8094 4.6189 41 1 -0.0785 7.8788 5.9949 42 1 0.7142 6.3425 5.5702 43 1 -2.3552 9.5846 6.4484 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493223175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:59 Heat of formation + Delta-G solvation = 53.258636 kcal Electronic energy + Delta-G solvation = -23391.787549 eV Core-core repulsion = 20053.233808 eV Total energy + Delta-G solvation = -3338.553742 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.75509 -38.99653 -36.30236 -34.97469 -33.40285 -33.05404 -30.79270 -30.13607 -28.52052 -25.77156 -25.64851 -25.08428 -23.98991 -22.92322 -21.06947 -20.46855 -18.87662 -18.48473 -17.63397 -16.23463 -15.67952 -15.41936 -14.94486 -14.89923 -14.51105 -14.39991 -13.95262 -13.77689 -13.29916 -13.10841 -12.83184 -12.72910 -12.59544 -12.30559 -12.23807 -12.06123 -11.60226 -11.30525 -11.12323 -10.80693 -10.64054 -10.31246 -10.14630 -9.97130 -9.65186 -9.56413 -9.43885 -9.25103 -9.02796 -8.71121 -8.35313 -8.09378 -7.78878 -5.96294 -4.05765 1.07764 2.31404 2.84202 3.32194 3.38879 3.43585 3.62105 3.88650 3.99576 4.36223 4.45802 4.53625 4.69526 4.81590 4.93295 5.13418 5.30372 5.33048 5.34801 5.40498 5.63249 5.80006 5.82066 6.00321 6.19155 6.41137 6.45326 6.45625 6.61144 6.89994 6.91922 6.98964 7.04213 7.11358 7.21240 7.31680 7.45583 7.63355 7.75723 8.08550 8.18503 8.31986 8.40163 8.46624 8.92841 8.99937 9.59598 11.05134 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026886 B = 0.003370 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.172064 B = 8305.516867 C = 8606.486940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.103 3.897 3 N -0.451 5.451 4 C -0.062 4.062 5 C -0.020 4.020 6 N -0.422 5.422 7 C 0.224 3.776 8 C -0.028 4.028 9 C -0.153 4.153 10 C 0.522 3.478 11 O -0.518 6.518 12 N -0.714 5.714 13 C 0.137 3.863 14 C 0.055 3.945 15 C -0.129 4.129 16 C -0.130 4.130 17 C -0.504 4.504 18 H 0.057 0.943 19 C 0.066 3.934 20 N -0.887 5.887 21 Si 0.892 3.108 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.168 0.832 31 H 0.164 0.836 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.395 0.605 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.006 0.994 38 H 0.084 0.916 39 H 0.025 0.975 40 H 0.026 0.974 41 H 0.084 0.916 42 H 0.007 0.993 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.968 -19.643 -6.738 21.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.134 5.134 4 C -0.196 4.196 5 C -0.173 4.173 6 N -0.139 5.139 7 C -0.033 4.033 8 C -0.050 4.050 9 C -0.177 4.177 10 C 0.309 3.691 11 O -0.395 6.395 12 N -0.365 5.365 13 C 0.014 3.986 14 C 0.055 3.945 15 C -0.187 4.187 16 C -0.187 4.187 17 C -0.542 4.542 18 H 0.075 0.925 19 C -0.135 4.135 20 N -0.526 5.526 21 Si 0.720 3.280 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.186 0.814 31 H 0.181 0.819 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.229 0.771 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.025 0.975 38 H 0.103 0.897 39 H 0.044 0.956 40 H 0.045 0.955 41 H 0.103 0.897 42 H 0.026 0.974 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.033 -18.864 -6.948 21.297 hybrid contribution -0.717 0.128 -0.464 0.864 sum 6.315 -18.736 -7.412 21.115 Atomic orbital electron populations 1.22152 0.94045 1.02759 1.03763 1.21783 0.95807 0.80309 1.04044 1.45601 1.48721 1.12063 1.07011 1.22645 1.09974 0.94732 0.92268 1.22234 1.06619 0.96693 0.91741 1.70466 1.15331 1.16584 1.11506 1.21326 1.06438 0.87067 0.88490 1.21011 0.96939 0.98660 0.88342 1.23341 0.98677 0.95742 0.99949 1.18277 0.79779 0.84014 0.87078 1.90885 1.56170 1.77896 1.14511 1.46217 1.60231 1.20216 1.09855 1.21614 0.96357 0.82874 0.97756 1.18351 0.92539 0.92956 0.90686 1.21819 0.98497 0.96781 1.01620 1.21812 0.97175 0.98193 1.01562 1.21009 1.38283 1.01747 0.93191 0.92519 1.24875 0.95719 0.98113 0.94836 1.69805 1.45963 1.35066 1.01732 0.86585 0.79464 0.83077 0.78833 1.20777 1.21291 1.19898 0.90771 0.91508 0.91826 0.89244 0.89320 0.81444 0.81904 0.84558 0.84590 0.77051 0.92806 0.93150 0.97499 0.89689 0.95596 0.95458 0.89714 0.97448 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 10.24 37.16 0.38 -0.97 16 2 C 0.10 0.79 6.64 -4.05 -0.03 0.76 16 3 N -0.45 -5.55 2.78 -114.56 -0.32 -5.86 16 4 C -0.06 -0.78 11.57 -16.56 -0.19 -0.97 16 5 C -0.02 -0.32 11.84 -17.95 -0.21 -0.53 16 6 N -0.42 -7.77 8.57 -11.42 -0.10 -7.87 16 7 C 0.22 3.41 6.09 -154.53 -0.94 2.47 16 8 C -0.03 -0.35 9.72 -37.33 -0.36 -0.71 16 9 C -0.15 -2.06 10.07 -37.43 -0.38 -2.44 16 10 C 0.52 9.70 7.55 -13.01 -0.10 9.60 16 11 O -0.52 -11.46 12.61 5.17 0.07 -11.40 16 12 N -0.71 -13.48 4.95 -61.74 -0.31 -13.78 16 13 C 0.14 3.07 4.50 -4.05 -0.02 3.06 16 14 C 0.06 1.33 0.50 -155.67 -0.08 1.25 16 15 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 16 C -0.13 -3.03 8.08 37.16 0.30 -2.73 16 17 C -0.50 -13.61 8.01 -34.44 -0.28 -13.89 16 18 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 19 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 20 N -0.89 -24.11 9.35 55.43 0.52 -23.59 16 21 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.52 7.97 -51.93 -0.41 0.10 16 30 H 0.17 1.48 8.06 -52.48 -0.42 1.05 16 31 H 0.16 2.22 8.06 -52.48 -0.42 1.79 16 32 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 33 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.39 6.66 6.14 -40.82 -0.25 6.41 16 35 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 38 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 42 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 43 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 350.56 15.07 5.28 5.28 Total: -1.00 -33.50 350.56 -8.19 -41.70 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.62 Total: 5.46 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -1.69 Total: -6.12 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.20 Total: -51.11 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.07 Total: -11.40 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.50 -8.19 -41.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493223175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.956 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds