Wall clock time and date at job start Tue Mar 31 2020 06:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46491 * 109.47447 * 2 1 4 4 C 1.36247 * 126.51005 * 265.13544 * 3 2 1 5 5 C 1.35514 * 107.10379 * 180.24550 * 4 3 2 6 6 N 1.33167 * 108.44680 * 359.77543 * 5 4 3 7 7 C 1.31889 * 109.21799 * 359.97438 * 6 5 4 8 8 C 1.46525 * 125.87633 * 179.97438 * 7 6 5 9 9 C 1.35173 * 120.00111 * 44.10427 * 8 7 6 10 10 C 1.46317 * 119.99911 * 7.86026 * 9 8 7 11 11 O 1.21716 * 120.00219 * 6.52382 * 10 9 8 12 12 N 1.34778 * 120.00155 * 186.52841 * 10 9 8 13 13 C 1.46500 * 120.00361 * 179.97438 * 12 10 9 14 14 C 1.52990 * 109.47228 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47348 * 299.99954 * 14 13 12 16 16 C 1.53005 * 109.47393 * 59.99677 * 14 13 12 17 17 C 1.50696 * 109.47483 * 180.02562 * 14 13 12 18 18 H 1.08007 * 119.99408 * 359.97438 * 17 14 13 19 19 C 1.37881 * 120.00632 * 180.02562 * 17 14 13 20 20 N 1.31506 * 119.99603 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 120.00202 * 179.97438 * 19 17 14 22 22 H 1.48504 * 109.47124 * 89.99749 * 21 19 17 23 23 H 1.48499 * 109.47006 * 209.99858 * 21 19 17 24 24 H 1.48496 * 109.47126 * 329.99894 * 21 19 17 25 25 H 1.08996 * 109.47124 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47031 * 299.99969 * 1 2 3 27 27 H 1.09000 * 109.46971 * 59.99328 * 1 2 3 28 28 H 1.09001 * 109.47031 * 240.00031 * 2 1 3 29 29 H 1.09000 * 109.46971 * 120.00672 * 2 1 3 30 30 H 1.08007 * 126.44367 * 0.02562 * 4 3 2 31 31 H 1.08005 * 125.77488 * 179.77162 * 5 4 3 32 32 H 1.08007 * 119.99908 * 224.10594 * 8 7 6 33 33 H 1.08000 * 120.00009 * 187.85687 * 9 8 7 34 34 H 0.96998 * 119.99609 * 359.97438 * 12 10 9 35 35 H 1.08996 * 109.46892 * 300.00406 * 13 12 10 36 36 H 1.09003 * 109.46895 * 59.99553 * 13 12 10 37 37 H 1.09003 * 109.47382 * 59.99823 * 15 14 13 38 38 H 1.09002 * 109.47588 * 179.97438 * 15 14 13 39 39 H 1.09002 * 109.47555 * 299.99911 * 15 14 13 40 40 H 1.09001 * 109.46171 * 60.00087 * 16 14 13 41 41 H 1.08997 * 109.47211 * 179.97438 * 16 14 13 42 42 H 1.08995 * 109.47352 * 300.00405 * 16 14 13 43 43 H 0.97000 * 120.00184 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3762 2.1144 -1.0911 5 6 2.7715 3.3303 -0.6420 6 7 2.6561 3.3475 0.6845 7 6 2.1990 2.1807 1.0957 8 6 1.9363 1.8032 2.4869 9 6 1.3019 2.6649 3.3128 10 6 0.7256 3.8995 2.7793 11 8 0.7119 4.0953 1.5781 12 7 0.2101 4.8199 3.6180 13 6 -0.3664 6.0563 3.0840 14 6 -0.8770 6.9211 4.2382 15 6 -1.9480 6.1533 5.0157 16 6 0.2853 7.2624 5.1728 17 6 -1.4706 8.1926 3.6889 18 1 -1.4821 8.3667 2.6230 19 6 -1.9981 9.1342 4.5469 20 7 -1.9837 8.9224 5.8447 21 14 -2.7333 10.7107 3.8659 22 1 -4.1796 10.5070 3.5979 23 1 -2.5625 11.8044 4.8557 24 1 -2.0421 11.0738 2.6027 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.3528 1.7868 -2.1201 31 1 3.1211 4.1471 -1.2561 32 1 2.2496 0.8363 2.8524 33 1 1.2204 2.4421 4.3664 34 1 0.2208 4.6637 4.5753 35 1 0.3964 6.6030 2.5297 36 1 -1.1947 5.8131 2.4185 37 1 -1.5191 5.2334 5.4131 38 1 -2.3115 6.7692 5.8383 39 1 -2.7761 5.9101 4.3500 40 1 1.0482 7.8094 4.6189 41 1 -0.0785 7.8788 5.9949 42 1 0.7142 6.3425 5.5702 43 1 -2.3552 9.5846 6.4484 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493223175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:58 Heat of formation + Delta-G solvation = 32.456305 kcal Electronic energy + Delta-G solvation = -23392.689606 eV Core-core repulsion = 20053.233808 eV Total energy + Delta-G solvation = -3339.455799 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.75948 -40.49647 -38.10598 -35.79220 -34.92063 -34.41023 -32.68316 -30.97638 -29.61203 -27.55748 -27.54018 -26.97089 -24.83122 -24.11209 -22.16159 -21.65138 -20.58005 -19.90704 -18.66166 -17.84579 -17.20370 -16.80965 -16.30172 -16.13350 -16.02322 -15.66977 -15.04495 -14.85902 -14.67976 -14.44492 -14.32041 -14.19008 -13.91908 -13.59325 -13.24864 -13.18232 -13.05847 -12.94844 -12.67914 -12.60079 -12.24793 -12.19441 -12.13983 -11.47944 -11.25641 -10.99525 -10.81234 -10.69550 -10.58704 -10.39912 -10.25419 -9.74156 -8.86243 -8.02756 -6.18470 0.04878 1.31600 1.41126 1.43378 1.52505 1.98979 2.40602 2.45122 2.60000 2.64820 3.20226 3.61229 3.84702 3.93594 4.11245 4.12690 4.38828 4.44548 4.47208 4.52447 4.56843 4.69368 4.72383 4.81456 4.84281 5.00144 5.03206 5.06856 5.12098 5.20179 5.20382 5.36706 5.40261 5.47902 5.66257 5.67752 5.70091 5.96819 6.15687 6.22198 6.39616 6.44095 6.85139 6.86267 7.34945 7.48877 7.55926 8.96237 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026886 B = 0.003370 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.172064 B = 8305.516867 C = 8606.486940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.095 3.905 3 N -0.446 5.446 4 C -0.043 4.043 5 C -0.067 4.067 6 N -0.479 5.479 7 C 0.197 3.803 8 C -0.007 4.007 9 C -0.170 4.170 10 C 0.514 3.486 11 O -0.560 6.560 12 N -0.710 5.710 13 C 0.157 3.843 14 C 0.052 3.948 15 C -0.118 4.118 16 C -0.119 4.119 17 C -0.531 4.531 18 H 0.039 0.961 19 C 0.029 3.971 20 N -0.898 5.898 21 Si 0.945 3.055 22 H -0.277 1.277 23 H -0.280 1.280 24 H -0.279 1.279 25 H 0.105 0.895 26 H 0.042 0.958 27 H 0.045 0.955 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.206 0.794 31 H 0.163 0.837 32 H 0.191 0.809 33 H 0.180 0.820 34 H 0.407 0.593 35 H 0.025 0.975 36 H 0.029 0.971 37 H 0.039 0.961 38 H 0.063 0.937 39 H 0.015 0.985 40 H 0.012 0.988 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.319 -22.759 -6.252 24.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.025 4.025 3 N -0.128 5.128 4 C -0.179 4.179 5 C -0.219 4.219 6 N -0.197 5.197 7 C -0.060 4.060 8 C -0.028 4.028 9 C -0.194 4.194 10 C 0.303 3.697 11 O -0.439 6.439 12 N -0.363 5.363 13 C 0.033 3.967 14 C 0.051 3.949 15 C -0.175 4.175 16 C -0.176 4.176 17 C -0.570 4.570 18 H 0.057 0.943 19 C -0.171 4.171 20 N -0.537 5.537 21 Si 0.772 3.228 22 H -0.203 1.203 23 H -0.205 1.205 24 H -0.204 1.204 25 H 0.123 0.877 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.223 0.777 31 H 0.180 0.820 32 H 0.208 0.792 33 H 0.198 0.802 34 H 0.244 0.756 35 H 0.043 0.957 36 H 0.048 0.952 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.035 0.965 40 H 0.032 0.968 41 H 0.083 0.917 42 H 0.057 0.943 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.381 -22.019 -6.433 24.098 hybrid contribution -0.801 1.035 -0.736 1.502 sum 6.580 -20.985 -7.169 23.131 Atomic orbital electron populations 1.22129 0.94423 1.04095 1.01655 1.22224 0.95370 0.78010 1.06907 1.45894 1.47494 1.13433 1.05979 1.23159 1.07253 0.93569 0.93896 1.22518 1.09143 0.98599 0.91606 1.70333 1.17333 1.18973 1.13022 1.21852 1.06762 0.87008 0.90415 1.21685 0.94445 1.00097 0.86600 1.23373 1.00295 0.93448 1.02259 1.19198 0.78806 0.85160 0.86513 1.90876 1.57553 1.79029 1.16492 1.46040 1.60474 1.19171 1.10568 1.21076 0.94800 0.84148 0.96696 1.18347 0.93026 0.92330 0.91191 1.21642 0.97896 0.97622 1.00382 1.21650 0.96480 0.99121 1.00380 1.21274 1.39399 1.03690 0.92611 0.94274 1.25443 0.96005 1.00433 0.95198 1.69898 1.45921 1.35676 1.02177 0.85762 0.78772 0.80186 0.78114 1.20300 1.20511 1.20369 0.87678 0.93925 0.93600 0.86342 0.86613 0.77706 0.81965 0.79171 0.80231 0.75623 0.95654 0.95242 0.94169 0.91802 0.96549 0.96845 0.91731 0.94279 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 10.24 71.98 0.74 -1.45 16 2 C 0.10 1.09 6.64 86.38 0.57 1.66 16 3 N -0.45 -10.01 2.78 -516.36 -1.44 -11.44 16 4 C -0.04 -1.03 11.57 83.38 0.96 -0.06 16 5 C -0.07 -2.17 11.84 83.86 0.99 -1.18 16 6 N -0.48 -18.05 8.57 -190.04 -1.63 -19.68 16 7 C 0.20 5.78 6.09 135.89 0.83 6.61 16 8 C -0.01 -0.16 9.72 23.73 0.23 0.07 16 9 C -0.17 -4.16 10.07 23.67 0.24 -3.92 16 10 C 0.51 19.01 7.55 86.34 0.65 19.67 16 11 O -0.56 -25.62 12.61 -4.40 -0.06 -25.68 16 12 N -0.71 -26.64 4.95 -467.45 -2.32 -28.96 16 13 C 0.16 7.32 4.50 86.38 0.39 7.71 16 14 C 0.05 2.52 0.50 -52.93 -0.03 2.50 16 15 C -0.12 -5.40 8.08 71.98 0.58 -4.82 16 16 C -0.12 -5.56 8.08 71.98 0.58 -4.97 16 17 C -0.53 -29.56 8.01 25.60 0.21 -29.36 16 18 H 0.04 2.25 7.74 -2.91 -0.02 2.23 16 19 C 0.03 1.58 5.15 84.66 0.44 2.02 16 20 N -0.90 -49.06 9.35 21.45 0.20 -48.86 16 21 Si 0.95 44.01 29.54 68.60 2.03 46.04 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 25 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.12 0.74 7.97 -2.39 -0.02 0.72 16 30 H 0.21 3.07 8.06 -2.91 -0.02 3.05 16 31 H 0.16 4.80 8.06 -2.91 -0.02 4.78 16 32 H 0.19 1.91 8.06 -2.91 -0.02 1.88 16 33 H 0.18 2.70 8.06 -2.91 -0.02 2.67 16 34 H 0.41 12.99 6.14 -92.71 -0.57 12.42 16 35 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.04 1.53 6.86 -2.39 -0.02 1.51 16 38 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 39 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.06 3.31 6.07 -2.39 -0.01 3.29 16 42 H 0.04 1.53 6.86 -2.39 -0.02 1.52 16 43 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 Total: -1.00 -77.85 350.56 4.60 -73.25 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.43 Total: 20.87 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 7.38 Total: -5.54 kcal Atomic # 7 Polarization: -103.75 SS G_CDS: -5.18 Total: -108.94 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.06 Total: -25.68 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -77.85 4.60 -73.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493223175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.704 kcal (2) G-P(sol) polarization free energy of solvation -77.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds