Wall clock time and date at job start Tue Mar 31 2020 07:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40084 * 126.03708 * 2 1 4 4 C 1.30834 * 108.20770 * 180.17238 * 3 2 1 5 5 C 1.39876 * 108.20073 * 359.58566 * 4 3 2 6 6 C 1.34947 * 126.04040 * 179.71450 * 2 1 3 7 7 C 1.50709 * 126.12449 * 359.96194 * 6 2 1 8 8 C 1.50702 * 109.46907 * 265.01844 * 7 6 2 9 9 O 1.21281 * 120.00235 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99912 * 179.97438 * 8 7 6 11 11 C 1.46931 * 120.62736 * 359.73014 * 10 8 7 12 12 C 1.53617 * 108.54559 * 126.36492 * 11 10 8 13 13 C 1.53048 * 109.24253 * 54.85117 * 12 11 10 14 14 C 1.53005 * 109.45906 * 178.49254 * 13 12 11 15 15 C 1.50700 * 109.46860 * 295.06887 * 14 13 12 16 16 H 1.07991 * 120.00385 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99669 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00201 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 120.00094 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47397 * 89.99917 * 19 17 15 21 21 H 1.48502 * 109.46968 * 209.99890 * 19 17 15 22 22 H 1.48503 * 109.46957 * 329.99517 * 19 17 15 23 23 C 1.53039 * 109.53870 * 298.51336 * 13 12 11 24 24 C 1.46922 * 120.63039 * 179.97438 * 10 8 7 25 25 H 1.08995 * 109.47266 * 270.28769 * 1 2 3 26 26 H 1.08996 * 109.47009 * 30.29267 * 1 2 3 27 27 H 1.09011 * 109.46832 * 150.28859 * 1 2 3 28 28 H 1.08002 * 125.90318 * 179.85840 * 4 3 2 29 29 H 1.07992 * 126.04019 * 180.28605 * 5 4 3 30 30 H 1.09002 * 109.47036 * 25.01940 * 7 6 2 31 31 H 1.09000 * 109.46645 * 145.02156 * 7 6 2 32 32 H 1.09007 * 109.58211 * 246.19498 * 11 10 8 33 33 H 1.08996 * 109.58851 * 6.61972 * 11 10 8 34 34 H 1.09003 * 109.63799 * 294.86547 * 12 11 10 35 35 H 1.08996 * 109.46206 * 174.73384 * 12 11 10 36 36 H 1.09003 * 109.44817 * 58.52575 * 13 12 11 37 37 H 1.08995 * 109.47332 * 55.07033 * 14 13 12 38 38 H 1.09003 * 109.46879 * 175.06565 * 14 13 12 39 39 H 0.96991 * 120.00409 * 179.97438 * 18 17 15 40 40 H 1.09009 * 109.49543 * 301.41317 * 23 13 12 41 41 H 1.08997 * 109.52627 * 181.33302 * 23 13 12 42 42 H 1.08992 * 109.58971 * 353.37990 * 24 10 8 43 43 H 1.09004 * 109.58582 * 113.66390 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7322 -0.0037 5 6 3.5437 -0.6665 0.0034 6 6 2.2590 -1.0912 0.0054 7 6 1.7974 -2.5258 0.0134 8 6 1.7618 -3.0341 1.4317 9 8 2.0794 -2.3033 2.3460 10 7 1.3759 -4.3006 1.6841 11 6 0.9815 -5.1956 0.5876 12 6 1.8115 -6.4844 0.6864 13 6 1.6412 -7.0883 2.0824 14 6 2.4361 -8.3924 2.1740 15 6 1.8496 -9.4058 1.2253 16 1 0.9952 -9.1459 0.6181 17 6 2.4032 -10.6652 1.1333 18 7 1.8912 -11.5499 0.3057 19 14 3.8798 -11.1155 2.1852 20 1 3.4136 -11.6856 3.4748 21 1 4.7086 -12.1196 1.4709 22 1 4.6911 -9.8993 2.4461 23 6 2.1568 -6.1021 3.1330 24 6 1.3366 -4.8107 3.0613 25 1 -0.3633 0.0052 1.0276 26 1 -0.3633 0.8873 -0.5184 27 1 -0.3633 -0.8927 -0.5094 28 1 4.4054 1.3711 -0.0069 29 1 4.4211 -1.2962 0.0069 30 1 0.7994 -2.5888 -0.4204 31 1 2.4874 -3.1327 -0.5729 32 1 -0.0789 -5.4331 0.6733 33 1 1.1729 -4.7085 -0.3685 34 1 2.8635 -6.2568 0.5144 35 1 1.4663 -7.1970 -0.0627 36 1 0.5859 -7.2927 2.2631 37 1 3.4758 -8.2038 1.9069 38 1 2.3868 -8.7771 3.1927 39 1 2.2808 -12.4357 0.2407 40 1 3.2056 -5.8779 2.9379 41 1 2.0573 -6.5418 4.1253 42 1 1.7622 -4.0696 3.7378 43 1 0.3044 -5.0151 3.3460 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515486053.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:37 Heat of formation + Delta-G solvation = 31.363892 kcal Electronic energy + Delta-G solvation = -23259.602242 eV Core-core repulsion = 19920.099073 eV Total energy + Delta-G solvation = -3339.503169 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.43380 -39.97640 -37.47348 -34.17234 -33.60702 -32.62135 -32.04369 -30.79861 -28.80297 -27.58870 -26.86670 -24.62171 -23.03810 -21.80889 -21.25653 -20.40162 -19.59066 -18.74116 -17.35464 -16.82956 -16.74354 -15.73444 -15.54763 -15.28660 -14.56168 -14.40510 -13.99224 -13.92505 -13.73041 -13.37811 -13.25339 -13.16894 -12.86847 -12.60644 -12.59242 -12.36988 -12.22742 -11.96869 -11.52158 -11.20763 -10.97648 -10.75628 -10.71645 -10.40203 -10.05460 -9.81346 -9.76437 -9.55775 -9.34250 -9.12445 -8.59363 -8.58342 -8.51332 -6.09459 -4.07186 1.69732 2.36658 2.56544 2.71866 3.10240 3.27060 3.35392 3.38643 4.24470 4.37270 4.41010 4.49194 4.68741 4.89659 4.98149 5.02532 5.13436 5.22267 5.22999 5.24641 5.35089 5.35780 5.54032 5.56246 5.59547 5.65204 5.83590 5.93507 6.02971 6.20107 6.21581 6.35550 6.52487 6.56272 6.72653 6.79051 6.85648 6.88785 7.19357 7.37257 7.42321 7.59624 7.74628 8.12969 8.47721 8.94587 9.53821 11.03664 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.030838 B = 0.003077 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.762570 B = 9098.458194 C = 9109.213180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.368 5.368 3 N -0.299 5.299 4 C 0.046 3.954 5 C -0.257 4.257 6 C 0.106 3.894 7 C -0.081 4.081 8 C 0.516 3.484 9 O -0.538 6.538 10 N -0.605 5.605 11 C 0.101 3.899 12 C -0.121 4.121 13 C -0.072 4.072 14 C -0.010 4.010 15 C -0.517 4.517 16 H 0.073 0.927 17 C 0.066 3.934 18 N -0.904 5.904 19 Si 0.877 3.123 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.266 1.266 23 C -0.132 4.132 24 C 0.113 3.887 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.183 0.817 29 H 0.146 0.854 30 H 0.103 0.897 31 H 0.122 0.878 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.015 0.985 38 H 0.011 0.989 39 H 0.263 0.737 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.995 19.451 -1.647 19.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.151 5.151 3 N -0.120 5.120 4 C -0.139 4.139 5 C -0.287 4.287 6 C -0.022 4.022 7 C -0.122 4.122 8 C 0.303 3.697 9 O -0.415 6.415 10 N -0.338 5.338 11 C -0.021 4.021 12 C -0.159 4.159 13 C -0.091 4.091 14 C -0.047 4.047 15 C -0.555 4.555 16 H 0.091 0.909 17 C -0.135 4.135 18 N -0.543 5.543 19 Si 0.705 3.295 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.191 1.191 23 C -0.170 4.170 24 C -0.009 4.009 25 H 0.093 0.907 26 H 0.108 0.892 27 H 0.103 0.897 28 H 0.200 0.800 29 H 0.164 0.836 30 H 0.121 0.879 31 H 0.140 0.860 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.756 20.673 -1.224 20.892 hybrid contribution 1.287 -1.321 0.494 1.909 sum -1.469 19.352 -0.730 19.421 Atomic orbital electron populations 1.21835 0.74693 1.04189 1.03515 1.48375 1.06359 1.03342 1.57019 1.77316 1.01902 1.07737 1.25087 1.23772 0.95174 0.95013 0.99929 1.21183 0.96159 0.95083 1.16239 1.20284 0.91419 0.88971 1.01517 1.20329 1.04498 0.90843 0.96563 1.20234 0.77323 0.81678 0.90493 1.90723 1.48383 1.55946 1.46451 1.48176 1.65740 1.11246 1.08682 1.22087 0.99704 0.91652 0.88690 1.21991 0.99540 0.94724 0.99608 1.21006 1.00382 0.95117 0.92572 1.19619 0.95630 0.92582 0.96854 1.21120 1.15750 0.95977 1.22639 0.90850 1.25027 0.96868 0.96453 0.95130 1.69904 1.41503 1.05583 1.37300 0.86818 0.83497 0.78476 0.80710 1.20378 1.21471 1.19052 1.22057 0.99710 0.94743 1.00529 1.21637 1.00443 0.96490 0.82287 0.90720 0.89222 0.89686 0.80048 0.83645 0.87860 0.85980 0.91105 0.90340 0.92163 0.89069 0.91728 0.96650 0.97041 0.92757 0.92008 0.91091 0.89639 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.80 11.27 59.85 0.67 1.48 16 2 N -0.37 -4.46 4.01 -63.88 -0.26 -4.72 16 3 N -0.30 -4.03 12.58 30.63 0.39 -3.64 16 4 C 0.05 0.55 12.03 -17.36 -0.21 0.34 16 5 C -0.26 -3.13 10.72 -40.01 -0.43 -3.55 16 6 C 0.11 1.27 5.42 -82.26 -0.45 0.83 16 7 C -0.08 -0.79 4.33 -29.03 -0.13 -0.92 16 8 C 0.52 6.83 7.69 -10.98 -0.08 6.74 16 9 O -0.54 -9.19 15.45 5.56 0.09 -9.11 16 10 N -0.60 -7.72 2.97 -172.53 -0.51 -8.23 16 11 C 0.10 1.16 6.37 -3.49 -0.02 1.14 16 12 C -0.12 -1.85 5.21 -26.39 -0.14 -1.99 16 13 C -0.07 -1.25 2.10 -90.57 -0.19 -1.44 16 14 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 15 C -0.52 -13.66 8.94 -34.44 -0.31 -13.97 16 16 H 0.07 2.05 7.30 -52.49 -0.38 1.67 16 17 C 0.07 1.85 5.47 -17.82 -0.10 1.75 16 18 N -0.90 -26.85 13.96 55.43 0.77 -26.08 16 19 Si 0.88 21.10 27.47 -169.99 -4.67 16.44 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 23 C -0.13 -1.98 5.36 -26.63 -0.14 -2.12 16 24 C 0.11 1.53 6.43 -3.73 -0.02 1.50 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.47 6.98 -51.92 -0.36 0.11 16 28 H 0.18 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.10 0.73 6.74 -51.93 -0.35 0.38 16 31 H 0.12 0.99 7.70 -51.93 -0.40 0.59 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.68 5.93 -51.93 -0.31 0.37 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 1.56 6.91 -51.93 -0.36 1.20 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.02 0.35 7.20 -51.93 -0.37 -0.03 16 38 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.09 1.22 7.00 -51.93 -0.36 0.85 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 344.93 15.07 5.20 5.20 Total: -1.00 -34.16 344.93 -7.32 -41.48 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -6.69 Total: -0.82 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -1.64 Total: -10.52 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.39 Total: -42.67 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.16 -7.32 -41.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515486053.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.845 kcal (2) G-P(sol) polarization free energy of solvation -34.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds