Wall clock time and date at job start Tue Mar 31 2020 07:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40084 * 126.03708 * 2 1 4 4 C 1.30834 * 108.20770 * 180.17238 * 3 2 1 5 5 C 1.39876 * 108.20073 * 359.58566 * 4 3 2 6 6 C 1.34947 * 126.04040 * 179.71450 * 2 1 3 7 7 C 1.50709 * 126.12449 * 359.96194 * 6 2 1 8 8 C 1.50702 * 109.46907 * 265.01844 * 7 6 2 9 9 O 1.21281 * 120.00235 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99912 * 179.97438 * 8 7 6 11 11 C 1.46931 * 120.62736 * 359.73014 * 10 8 7 12 12 C 1.53617 * 108.54559 * 126.36492 * 11 10 8 13 13 C 1.53048 * 109.24253 * 54.85117 * 12 11 10 14 14 C 1.53005 * 109.45906 * 178.49254 * 13 12 11 15 15 C 1.50700 * 109.46860 * 295.06887 * 14 13 12 16 16 H 1.07991 * 120.00385 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99669 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00201 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 120.00094 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47397 * 89.99917 * 19 17 15 21 21 H 1.48502 * 109.46968 * 209.99890 * 19 17 15 22 22 H 1.48503 * 109.46957 * 329.99517 * 19 17 15 23 23 C 1.53039 * 109.53870 * 298.51336 * 13 12 11 24 24 C 1.46922 * 120.63039 * 179.97438 * 10 8 7 25 25 H 1.08995 * 109.47266 * 270.28769 * 1 2 3 26 26 H 1.08996 * 109.47009 * 30.29267 * 1 2 3 27 27 H 1.09011 * 109.46832 * 150.28859 * 1 2 3 28 28 H 1.08002 * 125.90318 * 179.85840 * 4 3 2 29 29 H 1.07992 * 126.04019 * 180.28605 * 5 4 3 30 30 H 1.09002 * 109.47036 * 25.01940 * 7 6 2 31 31 H 1.09000 * 109.46645 * 145.02156 * 7 6 2 32 32 H 1.09007 * 109.58211 * 246.19498 * 11 10 8 33 33 H 1.08996 * 109.58851 * 6.61972 * 11 10 8 34 34 H 1.09003 * 109.63799 * 294.86547 * 12 11 10 35 35 H 1.08996 * 109.46206 * 174.73384 * 12 11 10 36 36 H 1.09003 * 109.44817 * 58.52575 * 13 12 11 37 37 H 1.08995 * 109.47332 * 55.07033 * 14 13 12 38 38 H 1.09003 * 109.46879 * 175.06565 * 14 13 12 39 39 H 0.96991 * 120.00409 * 179.97438 * 18 17 15 40 40 H 1.09009 * 109.49543 * 301.41317 * 23 13 12 41 41 H 1.08997 * 109.52627 * 181.33302 * 23 13 12 42 42 H 1.08992 * 109.58971 * 353.37990 * 24 10 8 43 43 H 1.09004 * 109.58582 * 113.66390 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7322 -0.0037 5 6 3.5437 -0.6665 0.0034 6 6 2.2590 -1.0912 0.0054 7 6 1.7974 -2.5258 0.0134 8 6 1.7618 -3.0341 1.4317 9 8 2.0794 -2.3033 2.3460 10 7 1.3759 -4.3006 1.6841 11 6 0.9815 -5.1956 0.5876 12 6 1.8115 -6.4844 0.6864 13 6 1.6412 -7.0883 2.0824 14 6 2.4361 -8.3924 2.1740 15 6 1.8496 -9.4058 1.2253 16 1 0.9952 -9.1459 0.6181 17 6 2.4032 -10.6652 1.1333 18 7 1.8912 -11.5499 0.3057 19 14 3.8798 -11.1155 2.1852 20 1 3.4136 -11.6856 3.4748 21 1 4.7086 -12.1196 1.4709 22 1 4.6911 -9.8993 2.4461 23 6 2.1568 -6.1021 3.1330 24 6 1.3366 -4.8107 3.0613 25 1 -0.3633 0.0052 1.0276 26 1 -0.3633 0.8873 -0.5184 27 1 -0.3633 -0.8927 -0.5094 28 1 4.4054 1.3711 -0.0069 29 1 4.4211 -1.2962 0.0069 30 1 0.7994 -2.5888 -0.4204 31 1 2.4874 -3.1327 -0.5729 32 1 -0.0789 -5.4331 0.6733 33 1 1.1729 -4.7085 -0.3685 34 1 2.8635 -6.2568 0.5144 35 1 1.4663 -7.1970 -0.0627 36 1 0.5859 -7.2927 2.2631 37 1 3.4758 -8.2038 1.9069 38 1 2.3868 -8.7771 3.1927 39 1 2.2808 -12.4357 0.2407 40 1 3.2056 -5.8779 2.9379 41 1 2.0573 -6.5418 4.1253 42 1 1.7622 -4.0696 3.7378 43 1 0.3044 -5.0151 3.3460 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000515486053.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:36 Heat of formation + Delta-G solvation = 9.597173 kcal Electronic energy + Delta-G solvation = -23260.546118 eV Core-core repulsion = 19920.099073 eV Total energy + Delta-G solvation = -3340.447045 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.28432 -41.02339 -38.69900 -35.67025 -34.46992 -34.06751 -33.25459 -31.88433 -30.34433 -28.60560 -27.57331 -26.09125 -24.16872 -23.27202 -22.10647 -21.58094 -20.71373 -19.79050 -18.83717 -18.26563 -17.70490 -16.70298 -16.53792 -16.33353 -16.11598 -15.38911 -15.26820 -15.00542 -14.80526 -14.78342 -14.33633 -14.24302 -14.13658 -13.72331 -13.54187 -13.43776 -13.22293 -13.06074 -12.85538 -12.79203 -12.39818 -12.11903 -11.95961 -11.72094 -11.62228 -11.30880 -11.22355 -10.92465 -10.87713 -10.69274 -10.21043 -9.61003 -9.45197 -8.23796 -6.24688 0.83485 1.36438 1.39142 1.49221 1.56436 1.65221 1.84257 2.15200 2.38952 3.12319 3.43695 3.59377 3.71918 3.96778 3.99935 4.05712 4.13385 4.23915 4.30259 4.37847 4.43365 4.48584 4.58313 4.65692 4.68924 4.78679 4.80530 4.85333 4.89913 4.96103 5.13356 5.20212 5.20475 5.26955 5.41557 5.43079 5.63367 5.74335 5.76656 5.77191 6.08830 6.36222 6.43055 6.74153 6.83177 7.13428 7.39424 8.92193 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.030838 B = 0.003077 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.762570 B = 9098.458194 C = 9109.213180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.375 5.375 3 N -0.333 5.333 4 C 0.039 3.961 5 C -0.279 4.279 6 C 0.098 3.902 7 C -0.075 4.075 8 C 0.517 3.483 9 O -0.581 6.581 10 N -0.604 5.604 11 C 0.109 3.891 12 C -0.118 4.118 13 C -0.070 4.070 14 C -0.009 4.009 15 C -0.512 4.512 16 H 0.046 0.954 17 C 0.005 3.995 18 N -0.951 5.951 19 Si 0.939 3.061 20 H -0.272 1.272 21 H -0.289 1.289 22 H -0.251 1.251 23 C -0.123 4.123 24 C 0.117 3.883 25 H 0.070 0.930 26 H 0.099 0.901 27 H 0.114 0.886 28 H 0.207 0.793 29 H 0.154 0.846 30 H 0.138 0.862 31 H 0.145 0.855 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.012 0.988 38 H 0.011 0.989 39 H 0.263 0.737 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.959 20.476 -1.642 20.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.158 5.158 3 N -0.156 5.156 4 C -0.145 4.145 5 C -0.308 4.308 6 C -0.031 4.031 7 C -0.116 4.116 8 C 0.306 3.694 9 O -0.461 6.461 10 N -0.336 5.336 11 C -0.012 4.012 12 C -0.157 4.157 13 C -0.089 4.089 14 C -0.046 4.046 15 C -0.550 4.550 16 H 0.064 0.936 17 C -0.191 4.191 18 N -0.593 5.593 19 Si 0.764 3.236 20 H -0.197 1.197 21 H -0.215 1.215 22 H -0.175 1.175 23 C -0.161 4.161 24 C -0.005 4.005 25 H 0.089 0.911 26 H 0.118 0.882 27 H 0.132 0.868 28 H 0.223 0.777 29 H 0.172 0.828 30 H 0.156 0.844 31 H 0.162 0.838 32 H 0.102 0.898 33 H 0.133 0.867 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.030 0.970 38 H 0.029 0.971 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.736 21.711 -1.222 21.917 hybrid contribution 1.219 -1.646 0.479 2.103 sum -1.517 20.065 -0.743 20.136 Atomic orbital electron populations 1.22146 0.72880 1.06222 1.03884 1.48708 1.07562 1.03007 1.56541 1.77249 1.02772 1.09111 1.26422 1.24259 0.95603 0.95563 0.99115 1.21501 0.96932 0.95487 1.16889 1.20653 0.91568 0.89927 1.00950 1.20429 1.07072 0.89592 0.94497 1.20749 0.76034 0.81205 0.91426 1.90714 1.50230 1.57018 1.48125 1.48223 1.65414 1.11402 1.08591 1.22110 0.99508 0.89688 0.89918 1.21889 1.00085 0.96222 0.97462 1.20924 0.99319 0.93698 0.94908 1.19598 0.95800 0.93869 0.95362 1.21461 1.14528 0.96765 1.22273 0.93587 1.25889 0.99968 0.96705 0.96581 1.70046 1.43508 1.06156 1.39557 0.85828 0.80183 0.78590 0.79027 1.19706 1.21475 1.17484 1.21931 0.99386 0.94883 0.99896 1.21542 1.00814 0.95211 0.82962 0.91101 0.88239 0.86762 0.77685 0.82810 0.84424 0.83771 0.89779 0.86663 0.92533 0.91344 0.92157 0.96963 0.97098 0.92807 0.92748 0.90495 0.90382 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.24 11.27 127.77 1.44 2.68 16 2 N -0.38 -8.45 4.01 -356.02 -1.43 -9.88 16 3 N -0.33 -8.71 12.58 -57.02 -0.72 -9.43 16 4 C 0.04 0.89 12.03 85.24 1.03 1.91 16 5 C -0.28 -6.40 10.72 21.99 0.24 -6.16 16 6 C 0.10 2.14 5.42 41.41 0.22 2.36 16 7 C -0.08 -1.20 4.33 29.11 0.13 -1.07 16 8 C 0.52 12.27 7.69 87.66 0.67 12.95 16 9 O -0.58 -19.00 15.45 -3.03 -0.05 -19.04 16 10 N -0.60 -13.63 2.97 -818.16 -2.43 -16.05 16 11 C 0.11 2.14 6.37 86.50 0.55 2.69 16 12 C -0.12 -3.43 5.21 30.82 0.16 -3.27 16 13 C -0.07 -2.34 2.10 -10.76 -0.02 -2.36 16 14 C -0.01 -0.39 3.52 29.85 0.10 -0.28 16 15 C -0.51 -27.29 8.94 25.60 0.23 -27.06 16 16 H 0.05 2.64 7.30 -2.92 -0.02 2.62 16 17 C 0.00 0.28 5.47 84.65 0.46 0.74 16 18 N -0.95 -57.60 13.96 21.45 0.30 -57.30 16 19 Si 0.94 43.29 27.47 68.60 1.88 45.17 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 22 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 23 C -0.12 -3.45 5.36 30.66 0.16 -3.29 16 24 C 0.12 2.89 6.43 86.35 0.55 3.45 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.11 0.85 6.98 -2.38 -0.02 0.84 16 28 H 0.21 3.22 8.06 -2.91 -0.02 3.19 16 29 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 30 H 0.14 1.24 6.74 -2.39 -0.02 1.23 16 31 H 0.14 1.71 7.70 -2.39 -0.02 1.70 16 32 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.12 1.44 5.93 -2.39 -0.01 1.43 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 2.31 6.91 -2.39 -0.02 2.29 16 36 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.01 0.53 7.20 -2.39 -0.02 0.52 16 38 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 39 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 40 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.08 2.10 7.00 -2.39 -0.02 2.08 16 43 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -75.53 344.93 4.43 -71.10 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.94 Total: 12.14 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 5.93 Total: -16.70 kcal Atomic # 7 Polarization: -88.39 SS G_CDS: -4.27 Total: -92.67 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.05 Total: -19.04 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.88 Total: 45.17 kcal Total: -75.53 4.43 -71.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515486053.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.700 kcal (2) G-P(sol) polarization free energy of solvation -75.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds