Wall clock time and date at job start Tue Mar 31 2020 07:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34952 * 126.03795 * 2 1 4 4 C 1.35309 * 107.74486 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.03922 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46869 * 90.00033 * 5 4 3 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72354 * 6 5 4 9 9 C 1.46931 * 120.63086 * 0.02562 * 8 6 5 10 10 C 1.53622 * 108.54424 * 126.36867 * 9 8 6 11 11 C 1.53036 * 109.24613 * 54.85288 * 10 9 8 12 12 C 1.52995 * 109.46103 * 178.49326 * 11 10 9 13 13 C 1.50701 * 109.47074 * 295.06931 * 12 11 10 14 14 H 1.07996 * 120.00010 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99803 * 180.02562 * 13 12 11 16 16 N 1.31523 * 119.99529 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 120.00279 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.46974 * 90.00322 * 17 15 13 19 19 H 1.48494 * 109.47181 * 210.00184 * 17 15 13 20 20 H 1.48498 * 109.47298 * 330.00516 * 17 15 13 21 21 C 1.53046 * 109.53689 * 298.51382 * 11 10 9 22 22 C 1.46925 * 120.62933 * 180.27723 * 8 6 5 23 23 C 1.39862 * 107.92412 * 0.26482 * 4 3 2 24 24 N 1.30839 * 108.20322 * 359.55554 * 23 4 3 25 25 H 1.08996 * 109.47269 * 89.99701 * 1 2 3 26 26 H 1.09001 * 109.47007 * 209.99823 * 1 2 3 27 27 H 1.09000 * 109.46923 * 329.99316 * 1 2 3 28 28 H 1.08000 * 126.12459 * 0.04364 * 3 2 1 29 29 H 1.09004 * 109.47210 * 330.00326 * 5 4 3 30 30 H 1.08994 * 109.47551 * 209.99978 * 5 4 3 31 31 H 1.09000 * 109.58052 * 246.19939 * 9 8 6 32 32 H 1.08995 * 109.58699 * 6.62138 * 9 8 6 33 33 H 1.09003 * 109.63253 * 294.86246 * 10 9 8 34 34 H 1.08998 * 109.43170 * 174.72646 * 10 9 8 35 35 H 1.08996 * 109.44694 * 58.52287 * 11 10 9 36 36 H 1.09002 * 109.47470 * 55.06719 * 12 11 10 37 37 H 1.08999 * 109.47237 * 175.06818 * 12 11 10 38 38 H 0.96996 * 119.99627 * 179.97438 * 16 15 13 39 39 H 1.08997 * 109.49431 * 301.40868 * 21 11 10 40 40 H 1.08999 * 109.52034 * 181.33388 * 21 11 10 41 41 H 1.08994 * 109.58707 * 353.37218 * 22 8 6 42 42 H 1.09001 * 109.58947 * 113.66077 * 22 8 6 43 43 H 1.07999 * 125.90337 * 179.74016 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7680 1.5453 -0.0013 6 6 5.1767 1.8383 1.4193 7 8 4.5372 1.3786 2.3415 8 7 6.2566 2.6064 1.6649 9 6 7.0450 3.1656 0.5583 10 6 7.1574 4.6847 0.7572 11 6 7.7335 4.9703 2.1459 12 6 7.8827 6.4812 2.3350 13 6 8.9038 7.0109 1.3614 14 1 9.3972 6.3372 0.6765 15 6 9.2087 8.3554 1.3456 16 7 10.1002 8.8176 0.4962 17 14 8.3558 9.5206 2.5306 18 1 9.1414 9.6110 3.7874 19 1 8.2532 10.8671 1.9130 20 1 6.9946 9.0099 2.8334 21 6 6.7912 4.4132 3.2155 22 6 6.6711 2.8960 3.0444 23 6 3.5347 -0.7320 -0.0071 24 7 2.2892 -1.1328 -0.0007 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.9281 2.1193 0.0007 29 1 4.5439 2.4801 -0.5152 30 1 5.5818 1.0341 -0.5154 31 1 8.0397 2.7199 0.5567 32 1 6.5467 2.9554 -0.3880 33 1 6.1703 5.1392 0.6724 34 1 7.8172 5.1022 -0.0033 35 1 8.7098 4.4945 2.2387 36 1 6.9234 6.9664 2.1552 37 1 8.2099 6.6894 3.3537 38 1 10.3145 9.7635 0.4849 39 1 5.8076 4.8703 3.1074 40 1 7.1899 4.6376 4.2048 41 1 5.9260 2.5080 3.7389 42 1 7.6348 2.4267 3.2427 43 1 4.4054 -1.3710 -0.0131 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517940540.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:41 Heat of formation + Delta-G solvation = 30.949033 kcal Electronic energy + Delta-G solvation = -22977.918953 eV Core-core repulsion = 19638.397794 eV Total energy + Delta-G solvation = -3339.521159 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.35725 -39.83217 -37.33675 -34.04064 -33.80318 -32.34443 -31.82508 -30.68255 -28.83795 -28.17127 -26.05630 -24.40683 -22.90414 -21.68048 -21.23356 -20.56927 -19.64606 -18.61467 -17.08368 -16.89464 -16.67529 -15.64212 -15.38993 -15.30369 -14.57339 -14.36321 -13.89795 -13.71221 -13.61836 -13.40581 -13.16997 -13.01515 -12.87676 -12.71483 -12.44135 -12.31389 -12.09226 -11.77773 -11.46166 -11.14380 -10.90116 -10.69803 -10.67480 -10.33153 -9.92934 -9.73034 -9.59818 -9.52513 -9.48250 -9.07961 -8.55408 -8.47731 -8.35342 -6.06537 -4.03846 1.76995 2.37644 2.62679 2.81349 3.28841 3.31447 3.36907 3.40379 4.31912 4.43473 4.68543 4.76779 4.86328 4.92111 4.98708 5.11061 5.16260 5.22110 5.27165 5.35205 5.45517 5.47549 5.52314 5.63873 5.65949 5.75333 5.92949 5.98979 6.04231 6.29197 6.30842 6.42872 6.51354 6.65201 6.80356 6.85419 6.85657 6.96581 7.23851 7.42667 7.56664 7.62319 7.78137 8.37539 8.51421 8.98102 9.56840 11.06663 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028805 B = 0.002949 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.816528 B = 9493.724898 C = 9628.082469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.379 5.379 3 C 0.068 3.932 4 C -0.216 4.216 5 C -0.060 4.060 6 C 0.513 3.487 7 O -0.545 6.545 8 N -0.609 5.609 9 C 0.103 3.897 10 C -0.120 4.120 11 C -0.072 4.072 12 C -0.010 4.010 13 C -0.515 4.515 14 H 0.074 0.926 15 C 0.066 3.934 16 N -0.904 5.904 17 Si 0.878 3.122 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.266 1.266 21 C -0.132 4.132 22 C 0.113 3.887 23 C 0.063 3.937 24 N -0.302 5.302 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.171 0.829 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.015 0.985 37 H 0.011 0.989 38 H 0.262 0.738 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.819 -15.548 -2.258 21.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.161 5.161 3 C -0.078 4.078 4 C -0.228 4.228 5 C -0.101 4.101 6 C 0.301 3.699 7 O -0.422 6.422 8 N -0.343 5.343 9 C -0.020 4.020 10 C -0.158 4.158 11 C -0.091 4.091 12 C -0.047 4.047 13 C -0.553 4.553 14 H 0.092 0.908 15 C -0.135 4.135 16 N -0.543 5.543 17 Si 0.705 3.295 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.191 1.191 21 C -0.170 4.170 22 C -0.009 4.009 23 C -0.123 4.123 24 N -0.123 5.123 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.104 0.896 28 H 0.189 0.811 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.033 0.967 37 H 0.029 0.971 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.081 0.919 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -16.044 -16.640 -1.820 23.186 hybrid contribution 0.283 1.681 0.602 1.808 sum -15.762 -14.959 -1.219 21.764 Atomic orbital electron populations 1.21822 0.74362 1.04466 1.03155 1.48365 1.06520 1.03871 1.57331 1.22249 0.90842 0.93289 1.01413 1.19450 0.93503 0.93674 1.16195 1.19938 0.95768 0.99966 0.94452 1.20692 0.79710 0.77950 0.91584 1.90665 1.53422 1.51745 1.46417 1.48216 1.28234 1.50044 1.07781 1.22038 0.95594 0.95656 0.88676 1.21981 1.01833 0.92523 0.99477 1.20998 0.97053 0.98396 0.92621 1.19620 0.97091 0.91167 0.96815 1.21136 1.21727 0.93636 1.18839 0.90816 1.25030 0.94770 0.98348 0.95383 1.69913 1.33106 1.14409 1.36913 0.86814 0.80829 0.80333 0.81500 1.20396 1.21514 1.19087 1.22047 1.00739 0.93987 1.00203 1.21589 1.00111 0.96452 0.82772 1.23699 0.95147 0.94403 0.99072 1.77311 1.01652 1.08294 1.25034 0.90863 0.89414 0.89552 0.81138 0.88320 0.88183 0.91335 0.90186 0.92345 0.89229 0.91756 0.96720 0.97092 0.92801 0.92188 0.91284 0.89804 0.91873 0.80272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.66 11.47 59.85 0.69 1.35 16 2 N -0.38 -4.17 4.01 -68.16 -0.27 -4.44 16 3 C 0.07 0.74 11.40 -17.22 -0.20 0.54 16 4 C -0.22 -2.52 4.59 -105.06 -0.48 -3.01 16 5 C -0.06 -0.62 4.53 -29.03 -0.13 -0.76 16 6 C 0.51 7.16 7.69 -10.98 -0.08 7.07 16 7 O -0.54 -9.62 15.45 5.55 0.09 -9.53 16 8 N -0.61 -8.31 2.97 -172.53 -0.51 -8.83 16 9 C 0.10 1.28 6.37 -3.48 -0.02 1.26 16 10 C -0.12 -1.92 5.21 -26.39 -0.14 -2.06 16 11 C -0.07 -1.30 2.10 -90.58 -0.19 -1.49 16 12 C -0.01 -0.22 3.52 -27.89 -0.10 -0.31 16 13 C -0.52 -13.82 8.94 -34.44 -0.31 -14.13 16 14 H 0.07 2.10 7.30 -52.49 -0.38 1.71 16 15 C 0.07 1.85 5.47 -17.81 -0.10 1.75 16 16 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 17 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 21 C -0.13 -2.05 5.36 -26.63 -0.14 -2.19 16 22 C 0.11 1.61 6.43 -3.73 -0.02 1.59 16 23 C 0.06 0.76 11.96 -17.37 -0.21 0.55 16 24 N -0.30 -3.96 12.58 30.62 0.39 -3.57 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.10 0.87 7.70 -51.93 -0.40 0.47 16 30 H 0.10 0.83 7.93 -51.93 -0.41 0.42 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.78 5.94 -51.93 -0.31 0.47 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.59 6.91 -51.93 -0.36 1.23 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 37 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.08 1.26 7.00 -51.93 -0.36 0.89 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.18 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 347.48 15.07 5.24 5.24 Total: -1.00 -34.63 347.48 -7.22 -41.85 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -6.81 Total: -1.18 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -1.44 Total: -9.83 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.37 Total: -43.18 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.63 -7.22 -41.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517940540.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.797 kcal (2) G-P(sol) polarization free energy of solvation -34.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds