Wall clock time and date at job start Tue Mar 31 2020 07:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34952 * 126.03795 * 2 1 4 4 C 1.35309 * 107.74486 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.03922 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46869 * 90.00033 * 5 4 3 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72354 * 6 5 4 9 9 C 1.46931 * 120.63086 * 0.02562 * 8 6 5 10 10 C 1.53622 * 108.54424 * 126.36867 * 9 8 6 11 11 C 1.53036 * 109.24613 * 54.85288 * 10 9 8 12 12 C 1.52995 * 109.46103 * 178.49326 * 11 10 9 13 13 C 1.50701 * 109.47074 * 295.06931 * 12 11 10 14 14 H 1.07996 * 120.00010 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99803 * 180.02562 * 13 12 11 16 16 N 1.31523 * 119.99529 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 120.00279 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.46974 * 90.00322 * 17 15 13 19 19 H 1.48494 * 109.47181 * 210.00184 * 17 15 13 20 20 H 1.48498 * 109.47298 * 330.00516 * 17 15 13 21 21 C 1.53046 * 109.53689 * 298.51382 * 11 10 9 22 22 C 1.46925 * 120.62933 * 180.27723 * 8 6 5 23 23 C 1.39862 * 107.92412 * 0.26482 * 4 3 2 24 24 N 1.30839 * 108.20322 * 359.55554 * 23 4 3 25 25 H 1.08996 * 109.47269 * 89.99701 * 1 2 3 26 26 H 1.09001 * 109.47007 * 209.99823 * 1 2 3 27 27 H 1.09000 * 109.46923 * 329.99316 * 1 2 3 28 28 H 1.08000 * 126.12459 * 0.04364 * 3 2 1 29 29 H 1.09004 * 109.47210 * 330.00326 * 5 4 3 30 30 H 1.08994 * 109.47551 * 209.99978 * 5 4 3 31 31 H 1.09000 * 109.58052 * 246.19939 * 9 8 6 32 32 H 1.08995 * 109.58699 * 6.62138 * 9 8 6 33 33 H 1.09003 * 109.63253 * 294.86246 * 10 9 8 34 34 H 1.08998 * 109.43170 * 174.72646 * 10 9 8 35 35 H 1.08996 * 109.44694 * 58.52287 * 11 10 9 36 36 H 1.09002 * 109.47470 * 55.06719 * 12 11 10 37 37 H 1.08999 * 109.47237 * 175.06818 * 12 11 10 38 38 H 0.96996 * 119.99627 * 179.97438 * 16 15 13 39 39 H 1.08997 * 109.49431 * 301.40868 * 21 11 10 40 40 H 1.08999 * 109.52034 * 181.33388 * 21 11 10 41 41 H 1.08994 * 109.58707 * 353.37218 * 22 8 6 42 42 H 1.09001 * 109.58947 * 113.66077 * 22 8 6 43 43 H 1.07999 * 125.90337 * 179.74016 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7680 1.5453 -0.0013 6 6 5.1767 1.8383 1.4193 7 8 4.5372 1.3786 2.3415 8 7 6.2566 2.6064 1.6649 9 6 7.0450 3.1656 0.5583 10 6 7.1574 4.6847 0.7572 11 6 7.7335 4.9703 2.1459 12 6 7.8827 6.4812 2.3350 13 6 8.9038 7.0109 1.3614 14 1 9.3972 6.3372 0.6765 15 6 9.2087 8.3554 1.3456 16 7 10.1002 8.8176 0.4962 17 14 8.3558 9.5206 2.5306 18 1 9.1414 9.6110 3.7874 19 1 8.2532 10.8671 1.9130 20 1 6.9946 9.0099 2.8334 21 6 6.7912 4.4132 3.2155 22 6 6.6711 2.8960 3.0444 23 6 3.5347 -0.7320 -0.0071 24 7 2.2892 -1.1328 -0.0007 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.9281 2.1193 0.0007 29 1 4.5439 2.4801 -0.5152 30 1 5.5818 1.0341 -0.5154 31 1 8.0397 2.7199 0.5567 32 1 6.5467 2.9554 -0.3880 33 1 6.1703 5.1392 0.6724 34 1 7.8172 5.1022 -0.0033 35 1 8.7098 4.4945 2.2387 36 1 6.9234 6.9664 2.1552 37 1 8.2099 6.6894 3.3537 38 1 10.3145 9.7635 0.4849 39 1 5.8076 4.8703 3.1074 40 1 7.1899 4.6376 4.2048 41 1 5.9260 2.5080 3.7389 42 1 7.6348 2.4267 3.2427 43 1 4.4054 -1.3710 -0.0131 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517940540.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:40 Heat of formation + Delta-G solvation = 9.101345 kcal Electronic energy + Delta-G solvation = -22978.866339 eV Core-core repulsion = 19638.397794 eV Total energy + Delta-G solvation = -3340.468546 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.16011 -40.93436 -38.61276 -35.60486 -34.57833 -34.02991 -32.87573 -31.79380 -30.30929 -29.12076 -26.95112 -25.82806 -24.09439 -23.15905 -22.00667 -21.64220 -20.89007 -19.74925 -18.81345 -18.03339 -17.69389 -16.61491 -16.39790 -16.28655 -16.15322 -15.35865 -15.26620 -15.02671 -14.75686 -14.50547 -14.34066 -14.12874 -13.99340 -13.81208 -13.44494 -13.39059 -13.20300 -12.99397 -12.80162 -12.61927 -12.37862 -12.09335 -11.93983 -11.70625 -11.52113 -11.28414 -11.16140 -10.88805 -10.72930 -10.66620 -10.32496 -9.50848 -9.28136 -8.23106 -6.24050 0.98348 1.36994 1.39115 1.49732 1.69405 1.77284 1.78966 2.30735 2.39572 3.12777 3.66702 3.78419 3.98121 4.02438 4.06160 4.18805 4.25999 4.31345 4.32959 4.44390 4.47539 4.51613 4.62230 4.68259 4.72513 4.82133 4.89755 4.92003 4.93581 4.99663 5.16133 5.20713 5.22102 5.29148 5.43245 5.47493 5.67671 5.72681 5.77911 5.79703 6.16803 6.37426 6.57823 6.75752 6.83709 7.32313 7.39816 8.93001 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028805 B = 0.002949 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.816528 B = 9493.724898 C = 9628.082469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.384 5.384 3 C 0.064 3.936 4 C -0.235 4.235 5 C -0.053 4.053 6 C 0.512 3.488 7 O -0.586 6.586 8 N -0.610 5.610 9 C 0.112 3.888 10 C -0.117 4.117 11 C -0.070 4.070 12 C -0.008 4.008 13 C -0.512 4.512 14 H 0.044 0.956 15 C 0.004 3.996 16 N -0.951 5.951 17 Si 0.940 3.060 18 H -0.272 1.272 19 H -0.288 1.288 20 H -0.251 1.251 21 C -0.121 4.121 22 C 0.116 3.884 23 C 0.050 3.950 24 N -0.338 5.338 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.108 0.892 28 H 0.197 0.803 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.013 0.987 37 H 0.011 0.989 38 H 0.263 0.737 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.314 -15.850 -2.099 22.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.166 5.166 3 C -0.083 4.083 4 C -0.247 4.247 5 C -0.093 4.093 6 C 0.302 3.698 7 O -0.466 6.466 8 N -0.342 5.342 9 C -0.010 4.010 10 C -0.155 4.155 11 C -0.089 4.089 12 C -0.046 4.046 13 C -0.550 4.550 14 H 0.063 0.937 15 C -0.192 4.192 16 N -0.593 5.593 17 Si 0.765 3.235 18 H -0.197 1.197 19 H -0.214 1.214 20 H -0.174 1.174 21 C -0.160 4.160 22 C -0.006 4.006 23 C -0.136 4.136 24 N -0.160 5.160 25 H 0.108 0.892 26 H 0.106 0.894 27 H 0.126 0.874 28 H 0.214 0.786 29 H 0.138 0.862 30 H 0.143 0.857 31 H 0.096 0.904 32 H 0.133 0.867 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.031 0.969 37 H 0.029 0.971 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -17.551 -16.960 -1.667 24.463 hybrid contribution 0.750 1.748 0.527 1.974 sum -16.801 -15.212 -1.140 22.693 Atomic orbital electron populations 1.22151 0.72259 1.05582 1.04629 1.48743 1.07868 1.03430 1.56540 1.22759 0.90878 0.94343 1.00319 1.19696 0.94372 0.93653 1.17009 1.19987 0.96121 1.01050 0.92147 1.21319 0.78842 0.76951 0.92673 1.90651 1.54600 1.53314 1.48023 1.48289 1.28358 1.49930 1.07669 1.22038 0.96588 0.92664 0.89735 1.21877 1.00833 0.95379 0.97406 1.20919 0.97737 0.95302 0.94904 1.19593 0.95341 0.94277 0.95346 1.21464 1.21759 0.93236 1.18590 0.93728 1.25908 0.95664 1.00408 0.97255 1.70057 1.35223 1.14848 1.39174 0.85800 0.80418 0.77989 0.79259 1.19720 1.21416 1.17425 1.21919 0.99596 0.94880 0.99559 1.21497 1.00506 0.95219 0.83422 1.24069 0.95435 0.95220 0.98838 1.77237 1.02484 1.09887 1.26442 0.89193 0.89431 0.87356 0.78644 0.86157 0.85730 0.90409 0.86726 0.92502 0.91543 0.92406 0.96882 0.97097 0.92809 0.92707 0.90633 0.90464 0.90779 0.78886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.04 11.47 127.77 1.47 2.50 16 2 N -0.38 -7.88 4.01 -369.57 -1.48 -9.36 16 3 C 0.06 1.25 11.40 83.54 0.95 2.20 16 4 C -0.24 -5.01 4.59 -20.15 -0.09 -5.10 16 5 C -0.05 -0.92 4.53 29.10 0.13 -0.79 16 6 C 0.51 13.07 7.69 87.66 0.67 13.75 16 7 O -0.59 -19.86 15.45 -3.04 -0.05 -19.90 16 8 N -0.61 -15.10 2.97 -818.14 -2.43 -17.53 16 9 C 0.11 2.46 6.37 86.51 0.55 3.01 16 10 C -0.12 -3.57 5.21 30.82 0.16 -3.41 16 11 C -0.07 -2.44 2.10 -10.77 -0.02 -2.46 16 12 C -0.01 -0.36 3.52 29.85 0.10 -0.26 16 13 C -0.51 -27.76 8.94 25.60 0.23 -27.53 16 14 H 0.04 2.61 7.30 -2.91 -0.02 2.59 16 15 C 0.00 0.22 5.47 84.65 0.46 0.69 16 16 N -0.95 -58.17 13.96 21.45 0.30 -57.87 16 17 Si 0.94 43.64 27.47 68.60 1.88 45.52 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 19 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 20 H -0.25 -10.87 6.54 99.48 0.65 -10.22 16 21 C -0.12 -3.57 5.36 30.66 0.16 -3.40 16 22 C 0.12 3.09 6.43 86.35 0.55 3.65 16 23 C 0.05 1.15 11.96 85.23 1.02 2.16 16 24 N -0.34 -8.65 12.58 -57.03 -0.72 -9.37 16 25 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.11 0.69 8.14 -2.39 -0.02 0.68 16 28 H 0.20 2.57 8.06 -2.91 -0.02 2.55 16 29 H 0.12 1.61 7.70 -2.38 -0.02 1.59 16 30 H 0.12 1.58 7.93 -2.39 -0.02 1.56 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.11 1.76 5.94 -2.39 -0.01 1.75 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.07 2.35 6.91 -2.39 -0.02 2.33 16 35 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.01 0.58 7.20 -2.39 -0.02 0.56 16 37 H 0.01 0.47 7.57 -2.39 -0.02 0.46 16 38 H 0.26 15.15 8.31 -92.71 -0.77 14.37 16 39 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.08 2.21 7.00 -2.39 -0.02 2.19 16 42 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.19 3.49 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -75.98 347.48 4.80 -71.18 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.93 Total: 12.32 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: 6.36 Total: -15.00 kcal Atomic # 7 Polarization: -89.79 SS G_CDS: -4.33 Total: -94.12 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.05 Total: -19.90 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.88 Total: 45.52 kcal Total: -75.98 4.80 -71.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517940540.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.284 kcal (2) G-P(sol) polarization free energy of solvation -75.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds