Wall clock time and date at job start Tue Mar 31 2020 06:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47580 * 2 1 4 4 C 1.36905 * 120.00030 * 263.42028 * 3 2 1 5 5 H 1.08007 * 119.99564 * 137.57525 * 4 3 2 6 6 C 1.39011 * 120.00156 * 317.57252 * 4 3 2 7 7 N 1.31384 * 120.00135 * 347.28973 * 6 4 3 8 8 Si 1.86802 * 120.00092 * 167.29348 * 6 4 3 9 9 H 1.48499 * 109.47328 * 0.02562 * 8 6 4 10 10 H 1.48509 * 109.47173 * 119.99725 * 8 6 4 11 11 H 1.48494 * 109.47436 * 239.99900 * 8 6 4 12 12 C 1.34776 * 119.99605 * 83.41384 * 3 2 1 13 13 O 1.21605 * 120.00099 * 5.80917 * 12 3 2 14 14 C 1.47605 * 119.99891 * 185.80061 * 12 3 2 15 15 C 1.41548 * 126.52318 * 174.51333 * 14 12 3 16 16 C 1.35356 * 105.50180 * 179.74348 * 15 14 12 17 17 C 1.50697 * 126.38043 * 180.22130 * 16 15 14 18 18 N 1.35051 * 107.23910 * 0.37517 * 16 15 14 19 19 C 1.46501 * 124.87933 * 179.87079 * 18 16 15 20 20 H 1.09006 * 109.46850 * 359.71932 * 19 18 16 21 21 C 1.52998 * 109.47018 * 239.72240 * 19 18 16 22 22 C 1.52997 * 109.47417 * 119.72089 * 19 18 16 23 23 C 1.53005 * 117.49867 * 248.62372 * 22 19 18 24 24 C 1.52997 * 117.49944 * 180.02562 * 22 19 18 25 25 N 1.28471 * 110.24260 * 359.60651 * 18 16 15 26 26 H 1.09001 * 109.46945 * 59.99363 * 1 2 3 27 27 H 1.08990 * 109.47253 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46853 * 299.99919 * 1 2 3 29 29 H 1.09007 * 109.46874 * 240.00570 * 2 1 3 30 30 H 1.08993 * 109.47214 * 120.00604 * 2 1 3 31 31 H 0.97004 * 120.00082 * 179.97438 * 7 6 4 32 32 H 1.07994 * 127.24936 * 359.96253 * 15 14 12 33 33 H 1.08998 * 109.46771 * 270.18574 * 17 16 15 34 34 H 1.09007 * 109.46764 * 30.18331 * 17 16 15 35 35 H 1.09000 * 109.47218 * 150.18059 * 17 16 15 36 36 H 1.09005 * 109.47323 * 59.99804 * 21 19 18 37 37 H 1.09004 * 109.47057 * 179.97438 * 21 19 18 38 38 H 1.08998 * 109.47293 * 299.99769 * 21 19 18 39 39 H 1.08998 * 115.56020 * 34.30799 * 22 19 18 40 40 H 1.08995 * 117.49734 * 0.02562 * 23 22 19 41 41 H 1.09001 * 117.49299 * 145.01735 * 23 22 19 42 42 H 1.09001 * 117.49339 * 214.98099 * 24 22 19 43 43 H 1.08994 * 117.50019 * 359.97353 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.3748 1.9813 -1.1778 5 1 2.0864 3.0039 -1.3717 6 6 3.1078 1.2744 -2.1241 7 7 3.6712 0.1327 -1.7999 8 14 3.2917 1.9480 -3.8568 9 1 2.5682 3.2402 -3.9650 10 1 4.7310 2.1606 -4.1550 11 1 2.7230 0.9789 -4.8276 12 6 2.1169 2.0611 1.1595 13 8 1.9020 1.4971 2.2152 14 6 2.4858 3.4903 1.1480 15 6 2.5233 4.3596 2.2645 16 6 2.9185 5.5586 1.7762 17 6 3.1191 6.8244 2.5690 18 7 3.0962 5.4100 0.4457 19 6 3.5222 6.4743 -0.4666 20 1 3.6664 7.3976 0.0945 21 6 2.4490 6.6895 -1.5356 22 6 4.8376 6.0745 -1.1378 23 6 6.0925 6.8635 -0.7586 24 6 5.4513 7.0612 -2.1331 25 7 2.8434 4.2000 0.0959 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 4.1824 -0.3607 -2.4604 32 1 2.2897 4.1165 3.2904 33 1 2.1850 7.3852 2.6003 34 1 3.4259 6.5725 3.5842 35 1 3.8914 7.4309 2.0959 36 1 1.5117 6.9743 -1.0574 37 1 2.7657 7.4816 -2.2141 38 1 2.3047 5.7662 -2.0966 39 1 4.9555 5.0110 -1.3454 40 1 5.9809 7.6671 -0.0307 41 1 7.0358 6.3190 -0.7169 42 1 5.9726 6.6468 -2.9960 43 1 4.9176 7.9950 -2.3100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000538531746.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:55 Heat of formation + Delta-G solvation = 74.059398 kcal Electronic energy + Delta-G solvation = -24429.998707 eV Core-core repulsion = 21092.346954 eV Total energy + Delta-G solvation = -3337.651753 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.95827 -38.27848 -37.70678 -34.75365 -33.24372 -32.24495 -31.62639 -30.01400 -28.97442 -26.49082 -24.96279 -24.55065 -23.08715 -22.36867 -21.19587 -20.35101 -19.64649 -18.53112 -17.14700 -16.45328 -15.54018 -15.24402 -14.80808 -14.70113 -14.53580 -14.14467 -13.63155 -13.39444 -13.06566 -12.90528 -12.79335 -12.61673 -12.46280 -12.23113 -12.02787 -11.75816 -11.60011 -11.51933 -11.41410 -11.10118 -10.99659 -10.75057 -10.63427 -10.47779 -10.24231 -10.10538 -9.80365 -9.50321 -8.93126 -8.49843 -8.25637 -8.19011 -7.28269 -6.20234 -3.90170 2.54190 2.91002 2.96833 3.21487 3.26906 3.31874 3.74515 4.21062 4.41466 4.66389 4.76454 4.83185 4.88731 4.91368 5.06973 5.16005 5.23553 5.29339 5.34972 5.50256 5.60328 5.64105 5.67831 5.76884 5.90175 5.94376 6.01643 6.20770 6.22078 6.30463 6.37808 6.39652 6.50268 6.58615 6.67306 6.91753 7.12590 7.29619 7.47161 7.49778 7.76956 8.14607 8.65825 8.84542 9.25707 9.67344 10.08064 10.83490 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012986 B = 0.007438 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.602516 B = 3763.499930 C = 5322.209640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.113 3.887 3 N -0.423 5.423 4 C -0.309 4.309 5 H 0.110 0.890 6 C 0.039 3.961 7 N -0.872 5.872 8 Si 0.914 3.086 9 H -0.267 1.267 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.545 3.455 13 O -0.603 6.603 14 C 0.020 3.980 15 C -0.193 4.193 16 C -0.014 4.014 17 C -0.076 4.076 18 N -0.293 5.293 19 C 0.186 3.814 20 H 0.098 0.902 21 C -0.160 4.160 22 C -0.164 4.164 23 C -0.178 4.178 24 C -0.169 4.169 25 N -0.219 5.219 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.104 0.896 30 H 0.053 0.947 31 H 0.265 0.735 32 H 0.149 0.851 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.124 0.876 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.102 15.020 -0.077 15.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.010 4.010 3 N -0.140 5.140 4 C -0.439 4.439 5 H 0.127 0.873 6 C -0.165 4.165 7 N -0.510 5.510 8 Si 0.741 3.259 9 H -0.191 1.191 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.333 3.667 13 O -0.488 6.488 14 C -0.141 4.141 15 C -0.221 4.221 16 C -0.137 4.137 17 C -0.135 4.135 18 N -0.082 5.082 19 C 0.084 3.916 20 H 0.116 0.884 21 C -0.218 4.218 22 C -0.183 4.183 23 C -0.215 4.215 24 C -0.207 4.207 25 N -0.051 5.051 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.122 0.878 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.167 0.833 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.142 0.858 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.306 14.595 -0.910 14.681 hybrid contribution 0.196 0.263 -0.132 0.354 sum 1.502 14.857 -1.042 14.970 Atomic orbital electron populations 1.22098 0.98400 1.00086 1.01118 1.21339 0.91340 0.84833 1.03490 1.43360 1.53842 1.11566 1.05275 1.19951 1.31680 0.99488 0.92737 0.87266 1.25443 0.94748 0.96207 1.00151 1.69895 1.31448 1.15266 1.34419 0.86070 0.77924 0.79191 0.82731 1.19070 1.20987 1.20903 1.17272 0.81237 0.84069 0.84161 1.90601 1.57523 1.69282 1.31365 1.22076 1.06463 0.95853 0.89672 1.21414 1.09257 0.91415 1.00044 1.21190 1.08879 0.98151 0.85496 1.20225 1.01660 0.92414 0.99175 1.45838 1.48727 1.08327 1.05283 1.20854 0.93503 0.87146 0.90050 0.88426 1.22102 0.97481 1.03851 0.98336 1.22649 0.92342 0.99920 1.03360 1.23035 0.97285 1.02783 0.98394 1.22932 1.03669 1.00488 0.93575 1.74300 1.15625 0.89752 1.25467 0.93089 0.93364 0.93614 0.87831 0.92823 0.92451 0.83305 0.91243 0.90246 0.92030 0.92059 0.90881 0.90141 0.85763 0.88867 0.88595 0.88378 0.88607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 10.18 37.16 0.38 -3.04 16 2 C 0.11 2.87 5.59 -4.04 -0.02 2.85 16 3 N -0.42 -11.47 2.51 -115.97 -0.29 -11.76 16 4 C -0.31 -8.29 8.00 -15.00 -0.12 -8.41 16 5 H 0.11 2.91 5.84 -52.48 -0.31 2.60 16 6 C 0.04 1.02 5.07 -17.46 -0.09 0.93 16 7 N -0.87 -24.14 11.39 55.50 0.63 -23.51 16 8 Si 0.91 20.44 29.57 -169.99 -5.03 15.41 16 9 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 C 0.54 14.85 7.58 -12.44 -0.09 14.75 16 13 O -0.60 -17.32 16.59 5.27 0.09 -17.24 16 14 C 0.02 0.49 6.87 -82.77 -0.57 -0.08 16 15 C -0.19 -3.91 10.73 -39.35 -0.42 -4.33 16 16 C -0.01 -0.24 6.92 -82.21 -0.57 -0.81 16 17 C -0.08 -0.85 9.92 36.00 0.36 -0.50 16 18 N -0.29 -5.21 3.04 -50.66 -0.15 -5.37 16 19 C 0.19 2.51 3.17 -67.93 -0.22 2.30 16 20 H 0.10 1.03 6.31 -51.93 -0.33 0.71 16 21 C -0.16 -2.04 9.21 37.16 0.34 -1.70 16 22 C -0.16 -2.26 5.34 -90.62 -0.48 -2.74 16 23 C -0.18 -1.95 10.17 -26.75 -0.27 -2.22 16 24 C -0.17 -1.77 9.73 -26.76 -0.26 -2.03 16 25 N -0.22 -4.87 8.28 33.41 0.28 -4.59 16 26 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.10 2.73 5.67 -51.92 -0.29 2.44 16 30 H 0.05 1.40 7.55 -51.93 -0.39 1.01 16 31 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.15 2.83 8.06 -52.49 -0.42 2.40 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.58 7.03 -51.93 -0.37 0.21 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.71 7.29 -51.93 -0.38 0.34 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.12 2.20 7.99 -51.93 -0.42 1.78 16 40 H 0.09 0.86 8.05 -51.93 -0.42 0.44 16 41 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.10 0.82 7.61 -51.93 -0.40 0.42 16 LS Contribution 354.16 15.07 5.34 5.34 Total: -1.00 -32.44 354.16 -7.83 -40.27 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.65 Total: 6.47 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -2.04 Total: -5.03 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 0.46 Total: -45.23 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: 0.09 Total: -17.24 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.44 -7.83 -40.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000538531746.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.328 kcal (2) G-P(sol) polarization free energy of solvation -32.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds