Wall clock time and date at job start Tue Mar 31 2020 06:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47580 * 2 1 4 4 C 1.36905 * 120.00030 * 263.42028 * 3 2 1 5 5 H 1.08007 * 119.99564 * 137.57525 * 4 3 2 6 6 C 1.39011 * 120.00156 * 317.57252 * 4 3 2 7 7 N 1.31384 * 120.00135 * 347.28973 * 6 4 3 8 8 Si 1.86802 * 120.00092 * 167.29348 * 6 4 3 9 9 H 1.48499 * 109.47328 * 0.02562 * 8 6 4 10 10 H 1.48509 * 109.47173 * 119.99725 * 8 6 4 11 11 H 1.48494 * 109.47436 * 239.99900 * 8 6 4 12 12 C 1.34776 * 119.99605 * 83.41384 * 3 2 1 13 13 O 1.21605 * 120.00099 * 5.80917 * 12 3 2 14 14 C 1.47605 * 119.99891 * 185.80061 * 12 3 2 15 15 C 1.41548 * 126.52318 * 174.51333 * 14 12 3 16 16 C 1.35356 * 105.50180 * 179.74348 * 15 14 12 17 17 C 1.50697 * 126.38043 * 180.22130 * 16 15 14 18 18 N 1.35051 * 107.23910 * 0.37517 * 16 15 14 19 19 C 1.46501 * 124.87933 * 179.87079 * 18 16 15 20 20 H 1.09006 * 109.46850 * 359.71932 * 19 18 16 21 21 C 1.52998 * 109.47018 * 239.72240 * 19 18 16 22 22 C 1.52997 * 109.47417 * 119.72089 * 19 18 16 23 23 C 1.53005 * 117.49867 * 248.62372 * 22 19 18 24 24 C 1.52997 * 117.49944 * 180.02562 * 22 19 18 25 25 N 1.28471 * 110.24260 * 359.60651 * 18 16 15 26 26 H 1.09001 * 109.46945 * 59.99363 * 1 2 3 27 27 H 1.08990 * 109.47253 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46853 * 299.99919 * 1 2 3 29 29 H 1.09007 * 109.46874 * 240.00570 * 2 1 3 30 30 H 1.08993 * 109.47214 * 120.00604 * 2 1 3 31 31 H 0.97004 * 120.00082 * 179.97438 * 7 6 4 32 32 H 1.07994 * 127.24936 * 359.96253 * 15 14 12 33 33 H 1.08998 * 109.46771 * 270.18574 * 17 16 15 34 34 H 1.09007 * 109.46764 * 30.18331 * 17 16 15 35 35 H 1.09000 * 109.47218 * 150.18059 * 17 16 15 36 36 H 1.09005 * 109.47323 * 59.99804 * 21 19 18 37 37 H 1.09004 * 109.47057 * 179.97438 * 21 19 18 38 38 H 1.08998 * 109.47293 * 299.99769 * 21 19 18 39 39 H 1.08998 * 115.56020 * 34.30799 * 22 19 18 40 40 H 1.08995 * 117.49734 * 0.02562 * 23 22 19 41 41 H 1.09001 * 117.49299 * 145.01735 * 23 22 19 42 42 H 1.09001 * 117.49339 * 214.98099 * 24 22 19 43 43 H 1.08994 * 117.50019 * 359.97353 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.3748 1.9813 -1.1778 5 1 2.0864 3.0039 -1.3717 6 6 3.1078 1.2744 -2.1241 7 7 3.6712 0.1327 -1.7999 8 14 3.2917 1.9480 -3.8568 9 1 2.5682 3.2402 -3.9650 10 1 4.7310 2.1606 -4.1550 11 1 2.7230 0.9789 -4.8276 12 6 2.1169 2.0611 1.1595 13 8 1.9020 1.4971 2.2152 14 6 2.4858 3.4903 1.1480 15 6 2.5233 4.3596 2.2645 16 6 2.9185 5.5586 1.7762 17 6 3.1191 6.8244 2.5690 18 7 3.0962 5.4100 0.4457 19 6 3.5222 6.4743 -0.4666 20 1 3.6664 7.3976 0.0945 21 6 2.4490 6.6895 -1.5356 22 6 4.8376 6.0745 -1.1378 23 6 6.0925 6.8635 -0.7586 24 6 5.4513 7.0612 -2.1331 25 7 2.8434 4.2000 0.0959 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 4.1824 -0.3607 -2.4604 32 1 2.2897 4.1165 3.2904 33 1 2.1850 7.3852 2.6003 34 1 3.4259 6.5725 3.5842 35 1 3.8914 7.4309 2.0959 36 1 1.5117 6.9743 -1.0574 37 1 2.7657 7.4816 -2.2141 38 1 2.3047 5.7662 -2.0966 39 1 4.9555 5.0110 -1.3454 40 1 5.9809 7.6671 -0.0307 41 1 7.0358 6.3190 -0.7169 42 1 5.9726 6.6468 -2.9960 43 1 4.9176 7.9950 -2.3100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000538531746.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:55 Heat of formation + Delta-G solvation = 55.020842 kcal Electronic energy + Delta-G solvation = -24430.824280 eV Core-core repulsion = 21092.346954 eV Total energy + Delta-G solvation = -3338.477327 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.44984 -40.21800 -38.80251 -36.83969 -34.47976 -33.69290 -33.49687 -31.79303 -30.42620 -27.71513 -26.90015 -26.04497 -24.59750 -23.20817 -22.87208 -21.75641 -21.19623 -20.24455 -18.79818 -17.90274 -17.22540 -16.89777 -16.57393 -16.23793 -15.79747 -15.69545 -15.30548 -14.80241 -14.69243 -14.41542 -13.97891 -13.89855 -13.65793 -13.57073 -13.49654 -13.25992 -13.16208 -12.92314 -12.76345 -12.63194 -12.54574 -12.32376 -12.08229 -11.99582 -11.78936 -11.40848 -11.24253 -11.03175 -10.94265 -10.56149 -9.84245 -9.64352 -9.35299 -8.24851 -6.01796 0.92767 1.30338 1.40091 1.42894 1.54629 1.71586 2.31208 2.69339 2.84143 2.98092 3.16254 3.42168 3.79915 3.85672 3.92119 4.01618 4.06834 4.24644 4.32106 4.37811 4.42156 4.59496 4.63616 4.69208 4.77235 4.79121 4.82237 4.84797 4.91723 4.99039 5.04416 5.08912 5.17834 5.19468 5.21571 5.24169 5.31711 5.47374 5.54213 5.72768 6.08353 6.20334 6.59044 7.09898 7.31113 7.62948 8.00964 8.79992 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012986 B = 0.007438 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.602516 B = 3763.499930 C = 5322.209640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.111 3.889 3 N -0.435 5.435 4 C -0.318 4.318 5 H 0.108 0.892 6 C -0.005 4.005 7 N -0.907 5.907 8 Si 0.980 3.020 9 H -0.256 1.256 10 H -0.283 1.283 11 H -0.274 1.274 12 C 0.528 3.472 13 O -0.634 6.634 14 C -0.026 4.026 15 C -0.223 4.223 16 C 0.013 3.987 17 C -0.075 4.075 18 N -0.284 5.284 19 C 0.179 3.821 20 H 0.144 0.856 21 C -0.157 4.157 22 C -0.197 4.197 23 C -0.166 4.166 24 C -0.147 4.147 25 N -0.242 5.242 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.035 0.965 29 H 0.092 0.908 30 H 0.033 0.967 31 H 0.268 0.732 32 H 0.151 0.849 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.110 0.890 38 H 0.041 0.959 39 H 0.072 0.928 40 H 0.123 0.877 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.478 19.258 -0.954 19.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.012 4.012 3 N -0.152 5.152 4 C -0.447 4.447 5 H 0.126 0.874 6 C -0.205 4.205 7 N -0.546 5.546 8 Si 0.804 3.196 9 H -0.180 1.180 10 H -0.209 1.209 11 H -0.200 1.200 12 C 0.317 3.683 13 O -0.522 6.522 14 C -0.185 4.185 15 C -0.251 4.251 16 C -0.111 4.111 17 C -0.133 4.133 18 N -0.073 5.073 19 C 0.079 3.921 20 H 0.161 0.839 21 C -0.214 4.214 22 C -0.217 4.217 23 C -0.203 4.203 24 C -0.184 4.184 25 N -0.076 5.076 26 H 0.072 0.928 27 H 0.100 0.900 28 H 0.054 0.946 29 H 0.110 0.890 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.169 0.831 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.129 0.871 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.141 0.859 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.675 18.831 -1.805 18.992 hybrid contribution 0.155 -0.975 0.170 1.002 sum 1.830 17.856 -1.636 18.024 Atomic orbital electron populations 1.21950 0.95361 1.02166 1.00660 1.21351 0.93840 0.84275 1.01766 1.43628 1.54000 1.12018 1.05566 1.20102 1.32138 0.99668 0.92764 0.87449 1.26281 0.94060 0.96348 1.03837 1.70014 1.32263 1.16543 1.35777 0.85061 0.77805 0.79024 0.77696 1.17989 1.20906 1.19987 1.17872 0.80822 0.85784 0.83782 1.90532 1.58976 1.70514 1.32173 1.21863 1.09618 0.95042 0.92003 1.21592 1.11477 0.92477 0.99571 1.21946 1.05034 0.99036 0.85077 1.20486 1.04022 0.89760 0.99031 1.46303 1.46699 1.07712 1.06617 1.21389 0.93394 0.87089 0.90194 0.83904 1.22111 0.97714 1.03168 0.98430 1.22438 0.94060 0.98016 1.07149 1.23168 0.95338 1.02304 0.99506 1.23075 1.02180 1.00130 0.93051 1.74128 1.16203 0.91708 1.25573 0.92807 0.90000 0.94594 0.89016 0.94852 0.92240 0.83107 0.88701 0.88921 0.89016 0.91631 0.87120 0.93979 0.90994 0.85911 0.89470 0.88712 0.85396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.32 10.18 71.98 0.73 -5.59 16 2 C 0.11 5.92 5.59 86.38 0.48 6.40 16 3 N -0.44 -24.95 2.51 -639.06 -1.60 -26.55 16 4 C -0.32 -17.81 8.00 84.09 0.67 -17.13 16 5 H 0.11 5.99 5.84 -2.91 -0.02 5.97 16 6 C 0.00 -0.25 5.07 84.95 0.43 0.18 16 7 N -0.91 -52.15 11.39 21.67 0.25 -51.90 16 8 Si 0.98 42.86 29.57 68.60 2.03 44.89 16 9 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 12 C 0.53 30.61 7.58 86.72 0.66 31.26 16 13 O -0.63 -38.84 16.59 -4.05 -0.07 -38.91 16 14 C -0.03 -1.34 6.87 42.43 0.29 -1.04 16 15 C -0.22 -9.20 10.73 22.42 0.24 -8.96 16 16 C 0.01 0.43 6.92 41.40 0.29 0.71 16 17 C -0.08 -1.32 9.92 71.23 0.71 -0.61 16 18 N -0.28 -9.79 3.04 -314.19 -0.96 -10.75 16 19 C 0.18 4.28 3.17 44.99 0.14 4.43 16 20 H 0.14 2.14 6.31 -2.38 -0.02 2.13 16 21 C -0.16 -3.57 9.21 71.98 0.66 -2.91 16 22 C -0.20 -5.08 5.34 -10.79 -0.06 -5.14 16 23 C -0.17 -3.06 10.17 30.58 0.31 -2.75 16 24 C -0.15 -2.54 9.73 30.58 0.30 -2.24 16 25 N -0.24 -11.08 8.28 -48.20 -0.40 -11.48 16 26 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 28 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.09 5.09 5.67 -2.38 -0.01 5.07 16 30 H 0.03 1.86 7.55 -2.39 -0.02 1.84 16 31 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 32 H 0.15 5.93 8.06 -2.91 -0.02 5.90 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.09 1.11 7.03 -2.39 -0.02 1.10 16 36 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.11 1.65 7.29 -2.38 -0.02 1.63 16 38 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.07 2.63 7.99 -2.39 -0.02 2.62 16 40 H 0.12 1.55 8.05 -2.39 -0.02 1.53 16 41 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.13 1.41 7.61 -2.39 -0.02 1.39 16 Total: -1.00 -77.97 354.16 6.11 -71.86 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 1.00 Total: 26.21 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 5.86 Total: -3.38 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -2.71 Total: -100.68 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -0.07 Total: -38.91 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -77.97 6.11 -71.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000538531746.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.882 kcal (2) G-P(sol) polarization free energy of solvation -77.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds