Wall clock time and date at job start Tue Mar 31 2020 06:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47211 * 2 1 4 4 C 1.36912 * 119.99777 * 97.26978 * 3 2 1 5 5 H 1.08007 * 120.00131 * 159.69298 * 4 3 2 6 6 C 1.39020 * 120.00444 * 339.97100 * 4 3 2 7 7 N 1.31383 * 119.99705 * 358.06817 * 6 4 3 8 8 Si 1.86798 * 120.00561 * 178.07288 * 6 4 3 9 9 H 1.48502 * 109.46998 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47376 * 119.99892 * 8 6 4 11 11 H 1.48501 * 109.47090 * 240.00228 * 8 6 4 12 12 C 1.34775 * 120.00000 * 277.26734 * 3 2 1 13 13 O 1.21614 * 119.99529 * 176.52583 * 12 3 2 14 14 C 1.47605 * 120.00300 * 356.52724 * 12 3 2 15 15 C 1.41546 * 126.52408 * 187.76124 * 14 12 3 16 16 C 1.35349 * 105.49689 * 180.02562 * 15 14 12 17 17 C 1.50704 * 126.37253 * 180.02562 * 16 15 14 18 18 N 1.35047 * 107.24541 * 0.02562 * 16 15 14 19 19 C 1.46502 * 124.87734 * 179.97438 * 18 16 15 20 20 H 1.08996 * 109.47268 * 359.97438 * 19 18 16 21 21 C 1.52995 * 109.46860 * 120.00234 * 19 18 16 22 22 C 1.53004 * 109.46900 * 240.00200 * 19 18 16 23 23 C 1.52991 * 117.50074 * 128.62524 * 22 19 18 24 24 C 1.52992 * 60.00038 * 252.50786 * 23 22 19 25 25 N 1.28462 * 110.23872 * 359.72525 * 18 16 15 26 26 H 1.08997 * 109.47250 * 59.99486 * 1 2 3 27 27 H 1.09001 * 109.47347 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47087 * 299.99697 * 1 2 3 29 29 H 1.08999 * 109.47342 * 240.00069 * 2 1 3 30 30 H 1.09006 * 109.47208 * 120.00204 * 2 1 3 31 31 H 0.96996 * 120.00153 * 179.97438 * 7 6 4 32 32 H 1.08000 * 127.25074 * 359.97438 * 15 14 12 33 33 H 1.08999 * 109.46870 * 89.98257 * 17 16 15 34 34 H 1.09002 * 109.47271 * 209.97681 * 17 16 15 35 35 H 1.08999 * 109.47151 * 329.97631 * 17 16 15 36 36 H 1.09002 * 109.47073 * 180.02562 * 21 19 18 37 37 H 1.08997 * 109.47117 * 299.99118 * 21 19 18 38 38 H 1.08996 * 109.47485 * 59.99760 * 21 19 18 39 39 H 1.09004 * 115.54666 * 274.33101 * 22 19 18 40 40 H 1.09001 * 117.50016 * 359.97438 * 23 22 19 41 41 H 1.09001 * 117.50353 * 145.01379 * 23 22 19 42 42 H 1.09001 * 117.50058 * 252.51185 * 24 23 22 43 43 H 1.08992 * 117.50480 * 107.49002 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3879 1.9765 1.1762 5 1 3.0383 2.8388 1.1640 6 6 1.9309 1.4678 2.3865 7 7 1.1139 0.4390 2.4001 8 14 2.4783 2.2469 3.9936 9 1 3.3923 3.3818 3.7075 10 1 1.2900 2.7421 4.7337 11 1 3.1885 1.2357 4.8173 12 6 2.1037 2.0657 -1.1578 13 8 2.4488 3.2319 -1.1506 14 6 1.7785 1.4002 -2.4345 15 6 1.9654 1.9315 -3.7331 16 6 1.5275 0.9730 -4.5825 17 6 1.5139 1.0508 -6.0874 18 7 1.1049 -0.0659 -3.8302 19 6 0.5519 -1.3144 -4.3611 20 1 0.5358 -1.2705 -5.4501 21 6 1.4214 -2.4897 -3.9102 22 6 -0.8733 -1.5040 -3.8378 23 6 -1.9699 -1.7953 -4.8641 24 6 -1.9024 -0.4263 -4.1844 25 7 1.2625 0.1958 -2.5825 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.7953 0.0837 3.2445 32 1 2.3712 2.8984 -3.9916 33 1 2.4547 0.6646 -6.4797 34 1 0.6872 0.4553 -6.4747 35 1 1.3900 2.0887 -6.3965 36 1 1.0102 -3.4185 -4.3056 37 1 2.4366 -2.3546 -4.2832 38 1 1.4371 -2.5334 -2.8213 39 1 -0.9560 -1.9838 -2.8625 40 1 -1.6761 -1.8514 -5.9123 41 1 -2.7742 -2.4670 -4.5644 42 1 -2.6624 -0.1973 -3.4374 43 1 -1.5643 0.4179 -4.7852 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000538531747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:59 Heat of formation + Delta-G solvation = 89.187475 kcal Electronic energy + Delta-G solvation = -24573.511120 eV Core-core repulsion = 21236.515370 eV Total energy + Delta-G solvation = -3336.995750 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.13562 -38.27149 -37.65361 -34.88847 -33.40720 -32.45311 -31.47279 -29.58864 -29.11223 -26.67120 -25.41710 -24.11224 -22.59750 -22.46056 -21.72522 -20.58291 -19.80518 -18.35762 -16.79336 -16.57958 -15.86228 -15.46740 -15.19059 -14.72661 -14.42387 -13.88652 -13.75394 -13.40494 -13.00957 -12.82745 -12.76424 -12.65922 -12.44657 -12.23490 -12.04793 -11.77111 -11.69669 -11.54310 -11.20787 -11.10832 -10.93395 -10.61043 -10.48632 -10.31885 -10.24456 -10.10880 -9.93857 -9.45521 -8.73508 -8.45160 -8.33869 -8.26257 -7.48898 -6.14100 -3.75621 2.38948 2.78701 2.82745 3.25905 3.30586 3.38089 3.78402 4.19288 4.23745 4.55777 4.67970 4.72675 4.81502 4.88478 5.04109 5.10513 5.15112 5.29028 5.34345 5.45365 5.49266 5.52208 5.53079 5.74801 5.81927 5.83799 5.95545 6.02492 6.08679 6.20826 6.32651 6.48019 6.70291 6.95363 7.04055 7.09765 7.23141 7.38578 7.54576 7.71220 7.97505 8.27643 8.58973 8.78237 9.29513 9.56724 10.15788 10.77630 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.021040 B = 0.005133 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.455861 B = 5453.749920 C = 6214.823701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.121 3.879 3 N -0.423 5.423 4 C -0.292 4.292 5 H 0.100 0.900 6 C 0.025 3.975 7 N -0.872 5.872 8 Si 0.930 3.070 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.282 1.282 12 C 0.514 3.486 13 O -0.592 6.592 14 C 0.018 3.982 15 C -0.190 4.190 16 C -0.011 4.011 17 C -0.077 4.077 18 N -0.289 5.289 19 C 0.182 3.818 20 H 0.099 0.901 21 C -0.158 4.158 22 C -0.161 4.161 23 C -0.172 4.172 24 C -0.166 4.166 25 N -0.247 5.247 26 H 0.023 0.977 27 H 0.027 0.973 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.101 0.899 31 H 0.264 0.736 32 H 0.150 0.850 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.118 0.882 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.234 -8.558 -15.362 18.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.002 4.002 3 N -0.140 5.140 4 C -0.420 4.420 5 H 0.118 0.882 6 C -0.177 4.177 7 N -0.512 5.512 8 Si 0.757 3.243 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.208 1.208 12 C 0.302 3.698 13 O -0.477 6.477 14 C -0.142 4.142 15 C -0.218 4.218 16 C -0.134 4.134 17 C -0.136 4.136 18 N -0.077 5.077 19 C 0.081 3.919 20 H 0.117 0.883 21 C -0.216 4.216 22 C -0.180 4.180 23 C -0.209 4.209 24 C -0.203 4.203 25 N -0.081 5.081 26 H 0.042 0.958 27 H 0.046 0.954 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.168 0.832 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.136 0.864 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.567 -9.159 -14.625 17.851 hybrid contribution 0.309 0.876 0.378 1.003 sum -4.258 -8.283 -14.248 17.022 Atomic orbital electron populations 1.21881 0.96951 0.98751 1.00687 1.21683 0.94557 0.82865 1.01099 1.43684 1.53454 1.11741 1.05087 1.19818 1.26774 1.13143 0.82306 0.88206 1.25377 0.95927 0.96725 0.99643 1.70094 1.31607 1.23318 1.26223 0.85797 0.78422 0.79042 0.81068 1.19261 1.20748 1.20817 1.16801 0.85440 0.85732 0.81874 1.90592 1.54681 1.16151 1.86274 1.22420 1.04257 0.91737 0.95817 1.21413 1.08529 1.00841 0.91049 1.21192 1.06668 0.90506 0.95068 1.20245 1.01938 1.03426 0.87974 1.45713 1.45161 1.13156 1.03653 1.20929 0.91793 0.81545 0.97625 0.88276 1.22089 0.99221 0.96298 1.04004 1.22561 0.89292 1.05264 1.00893 1.23016 1.00683 0.99815 0.97408 1.22855 1.01721 0.92363 1.03395 1.74037 1.18699 1.17141 0.98217 0.95794 0.95410 0.90568 0.92919 0.88095 0.92537 0.83187 0.91090 0.92059 0.90135 0.90662 0.91987 0.90366 0.86419 0.88810 0.88372 0.88429 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.92 9.13 37.15 0.34 -2.58 16 2 C 0.12 3.01 4.87 -4.05 -0.02 2.99 16 3 N -0.42 -11.72 2.64 -115.97 -0.31 -12.02 16 4 C -0.29 -8.43 9.35 -14.99 -0.14 -8.57 16 5 H 0.10 3.00 7.37 -52.48 -0.39 2.61 16 6 C 0.03 0.68 5.30 -17.45 -0.09 0.59 16 7 N -0.87 -23.12 7.89 55.50 0.44 -22.68 16 8 Si 0.93 21.17 29.55 -169.99 -5.02 16.14 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 C 0.51 14.16 7.56 -12.44 -0.09 14.06 16 13 O -0.59 -17.91 16.63 5.27 0.09 -17.83 16 14 C 0.02 0.42 6.60 -82.77 -0.55 -0.13 16 15 C -0.19 -3.69 10.74 -39.35 -0.42 -4.11 16 16 C -0.01 -0.17 6.92 -82.21 -0.57 -0.73 16 17 C -0.08 -0.79 9.92 36.01 0.36 -0.43 16 18 N -0.29 -4.58 2.92 -50.66 -0.15 -4.73 16 19 C 0.18 2.12 3.13 -67.93 -0.21 1.91 16 20 H 0.10 0.90 6.30 -51.93 -0.33 0.58 16 21 C -0.16 -1.71 9.34 37.16 0.35 -1.36 16 22 C -0.16 -1.85 5.21 -90.63 -0.47 -2.32 16 23 C -0.17 -1.50 10.18 -26.74 -0.27 -1.77 16 24 C -0.17 -1.92 10.12 -26.74 -0.27 -2.19 16 25 N -0.25 -4.94 6.81 33.41 0.23 -4.72 16 26 H 0.02 0.55 6.85 -51.93 -0.36 0.20 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 1.99 6.27 -51.92 -0.33 1.67 16 29 H 0.05 1.24 5.50 -51.93 -0.29 0.96 16 30 H 0.10 2.67 5.85 -51.93 -0.30 2.36 16 31 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 32 H 0.15 2.79 8.06 -52.49 -0.42 2.37 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.51 7.02 -51.93 -0.36 0.14 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.12 1.50 8.11 -51.93 -0.42 1.08 16 40 H 0.09 0.67 8.05 -51.93 -0.42 0.25 16 41 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 347.11 15.07 5.23 5.23 Total: -1.00 -32.74 347.11 -8.11 -40.86 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.55 Total: 4.41 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -2.07 Total: -4.66 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.21 Total: -44.15 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: 0.09 Total: -17.83 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.74 -8.11 -40.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000538531747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.043 kcal (2) G-P(sol) polarization free energy of solvation -32.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds