Wall clock time and date at job start Tue Mar 31 2020 06:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47211 * 2 1 4 4 C 1.36912 * 119.99777 * 97.26978 * 3 2 1 5 5 H 1.08007 * 120.00131 * 159.69298 * 4 3 2 6 6 C 1.39020 * 120.00444 * 339.97100 * 4 3 2 7 7 N 1.31383 * 119.99705 * 358.06817 * 6 4 3 8 8 Si 1.86798 * 120.00561 * 178.07288 * 6 4 3 9 9 H 1.48502 * 109.46998 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47376 * 119.99892 * 8 6 4 11 11 H 1.48501 * 109.47090 * 240.00228 * 8 6 4 12 12 C 1.34775 * 120.00000 * 277.26734 * 3 2 1 13 13 O 1.21614 * 119.99529 * 176.52583 * 12 3 2 14 14 C 1.47605 * 120.00300 * 356.52724 * 12 3 2 15 15 C 1.41546 * 126.52408 * 187.76124 * 14 12 3 16 16 C 1.35349 * 105.49689 * 180.02562 * 15 14 12 17 17 C 1.50704 * 126.37253 * 180.02562 * 16 15 14 18 18 N 1.35047 * 107.24541 * 0.02562 * 16 15 14 19 19 C 1.46502 * 124.87734 * 179.97438 * 18 16 15 20 20 H 1.08996 * 109.47268 * 359.97438 * 19 18 16 21 21 C 1.52995 * 109.46860 * 120.00234 * 19 18 16 22 22 C 1.53004 * 109.46900 * 240.00200 * 19 18 16 23 23 C 1.52991 * 117.50074 * 128.62524 * 22 19 18 24 24 C 1.52992 * 60.00038 * 252.50786 * 23 22 19 25 25 N 1.28462 * 110.23872 * 359.72525 * 18 16 15 26 26 H 1.08997 * 109.47250 * 59.99486 * 1 2 3 27 27 H 1.09001 * 109.47347 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47087 * 299.99697 * 1 2 3 29 29 H 1.08999 * 109.47342 * 240.00069 * 2 1 3 30 30 H 1.09006 * 109.47208 * 120.00204 * 2 1 3 31 31 H 0.96996 * 120.00153 * 179.97438 * 7 6 4 32 32 H 1.08000 * 127.25074 * 359.97438 * 15 14 12 33 33 H 1.08999 * 109.46870 * 89.98257 * 17 16 15 34 34 H 1.09002 * 109.47271 * 209.97681 * 17 16 15 35 35 H 1.08999 * 109.47151 * 329.97631 * 17 16 15 36 36 H 1.09002 * 109.47073 * 180.02562 * 21 19 18 37 37 H 1.08997 * 109.47117 * 299.99118 * 21 19 18 38 38 H 1.08996 * 109.47485 * 59.99760 * 21 19 18 39 39 H 1.09004 * 115.54666 * 274.33101 * 22 19 18 40 40 H 1.09001 * 117.50016 * 359.97438 * 23 22 19 41 41 H 1.09001 * 117.50353 * 145.01379 * 23 22 19 42 42 H 1.09001 * 117.50058 * 252.51185 * 24 23 22 43 43 H 1.08992 * 117.50480 * 107.49002 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3879 1.9765 1.1762 5 1 3.0383 2.8388 1.1640 6 6 1.9309 1.4678 2.3865 7 7 1.1139 0.4390 2.4001 8 14 2.4783 2.2469 3.9936 9 1 3.3923 3.3818 3.7075 10 1 1.2900 2.7421 4.7337 11 1 3.1885 1.2357 4.8173 12 6 2.1037 2.0657 -1.1578 13 8 2.4488 3.2319 -1.1506 14 6 1.7785 1.4002 -2.4345 15 6 1.9654 1.9315 -3.7331 16 6 1.5275 0.9730 -4.5825 17 6 1.5139 1.0508 -6.0874 18 7 1.1049 -0.0659 -3.8302 19 6 0.5519 -1.3144 -4.3611 20 1 0.5358 -1.2705 -5.4501 21 6 1.4214 -2.4897 -3.9102 22 6 -0.8733 -1.5040 -3.8378 23 6 -1.9699 -1.7953 -4.8641 24 6 -1.9024 -0.4263 -4.1844 25 7 1.2625 0.1958 -2.5825 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.7953 0.0837 3.2445 32 1 2.3712 2.8984 -3.9916 33 1 2.4547 0.6646 -6.4797 34 1 0.6872 0.4553 -6.4747 35 1 1.3900 2.0887 -6.3965 36 1 1.0102 -3.4185 -4.3056 37 1 2.4366 -2.3546 -4.2832 38 1 1.4371 -2.5334 -2.8213 39 1 -0.9560 -1.9838 -2.8625 40 1 -1.6761 -1.8514 -5.9123 41 1 -2.7742 -2.4670 -4.5644 42 1 -2.6624 -0.1973 -3.4374 43 1 -1.5643 0.4179 -4.7852 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000538531747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:58 Heat of formation + Delta-G solvation = 70.057339 kcal Electronic energy + Delta-G solvation = -24574.340665 eV Core-core repulsion = 21236.515370 eV Total energy + Delta-G solvation = -3337.825295 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.54518 -40.18622 -38.70639 -37.02112 -34.57412 -33.87638 -33.26639 -31.26306 -30.76294 -27.88755 -27.24549 -25.41041 -24.18171 -23.54891 -23.25258 -21.82362 -21.20545 -19.99643 -18.78642 -17.93161 -17.45994 -16.99442 -16.43444 -16.14955 -15.82009 -15.75774 -15.36001 -14.84644 -14.62232 -14.37748 -13.95079 -13.78737 -13.59081 -13.56742 -13.37037 -13.19058 -13.05125 -12.82037 -12.68081 -12.64360 -12.42378 -12.19110 -12.10191 -12.01719 -11.83711 -11.33489 -11.19781 -11.14932 -10.80492 -10.57076 -9.85942 -9.70245 -9.55657 -8.22484 -5.94785 0.85770 1.27018 1.40591 1.46010 1.55395 1.64491 2.27967 2.58737 2.91885 3.10077 3.22480 3.32804 3.74594 3.81280 3.84945 4.00847 4.08872 4.17473 4.23277 4.44852 4.53569 4.70954 4.75877 4.78045 4.80001 4.84178 4.88624 4.99568 4.99807 5.06984 5.08268 5.14402 5.15764 5.22373 5.22670 5.31176 5.38386 5.55322 5.60146 5.90146 6.08878 6.23369 6.55655 7.11350 7.24515 7.47536 8.05115 8.67775 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.021040 B = 0.005133 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.455861 B = 5453.749920 C = 6214.823701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.132 3.868 3 N -0.435 5.435 4 C -0.341 4.341 5 H 0.073 0.927 6 C -0.003 4.003 7 N -0.877 5.877 8 Si 0.997 3.003 9 H -0.276 1.276 10 H -0.272 1.272 11 H -0.264 1.264 12 C 0.499 3.501 13 O -0.639 6.639 14 C -0.026 4.026 15 C -0.222 4.222 16 C 0.019 3.981 17 C -0.077 4.077 18 N -0.275 5.275 19 C 0.173 3.827 20 H 0.141 0.859 21 C -0.155 4.155 22 C -0.178 4.178 23 C -0.130 4.130 24 C -0.190 4.190 25 N -0.254 5.254 26 H 0.017 0.983 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.273 0.727 32 H 0.146 0.854 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.062 0.938 38 H 0.048 0.952 39 H 0.098 0.902 40 H 0.124 0.876 41 H 0.110 0.890 42 H 0.081 0.919 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.337 -11.052 -17.870 21.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.010 3.990 3 N -0.151 5.151 4 C -0.469 4.469 5 H 0.090 0.910 6 C -0.205 4.205 7 N -0.516 5.516 8 Si 0.820 3.180 9 H -0.201 1.201 10 H -0.198 1.198 11 H -0.188 1.188 12 C 0.288 3.712 13 O -0.527 6.527 14 C -0.184 4.184 15 C -0.250 4.250 16 C -0.106 4.106 17 C -0.135 4.135 18 N -0.064 5.064 19 C 0.074 3.926 20 H 0.159 0.841 21 C -0.213 4.213 22 C -0.197 4.197 23 C -0.167 4.167 24 C -0.227 4.227 25 N -0.090 5.090 26 H 0.036 0.964 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.164 0.836 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.116 0.884 40 H 0.142 0.858 41 H 0.129 0.871 42 H 0.100 0.900 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.694 -11.712 -17.127 21.516 hybrid contribution 0.570 1.536 1.055 1.949 sum -5.125 -10.175 -16.072 19.701 Atomic orbital electron populations 1.21632 0.95932 0.99692 0.98891 1.21618 0.95147 0.81581 1.00697 1.43907 1.53545 1.12598 1.05074 1.19776 1.29050 1.14092 0.84018 0.90953 1.26153 0.95357 0.96872 1.02089 1.70180 1.30754 1.23089 1.27542 0.84824 0.78149 0.78203 0.76778 1.20128 1.19752 1.18848 1.17499 0.84657 0.85610 0.83418 1.90513 1.56648 1.18143 1.87387 1.21892 1.07917 0.93688 0.94927 1.21546 1.10743 1.02178 0.90535 1.21853 1.02951 0.88444 0.97349 1.20497 1.04442 1.05177 0.83342 1.46235 1.43156 1.14472 1.02501 1.21507 0.91710 0.79715 0.99684 0.84140 1.22092 0.99442 0.97536 1.02220 1.22512 0.89750 1.05949 1.01535 1.23146 0.98650 0.96869 0.98017 1.22847 1.01877 0.93759 1.04226 1.73835 1.18453 1.15855 1.00811 0.96385 0.92941 0.93274 0.91717 0.89825 0.91699 0.83582 0.88765 0.88890 0.89024 0.87162 0.91921 0.93295 0.88367 0.85788 0.87149 0.90045 0.89394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.98 9.13 71.98 0.66 -4.33 16 2 C 0.13 6.82 4.87 86.38 0.42 7.24 16 3 N -0.43 -25.61 2.64 -639.05 -1.69 -27.30 16 4 C -0.34 -20.94 9.35 84.09 0.79 -20.15 16 5 H 0.07 4.71 7.37 -2.91 -0.02 4.69 16 6 C 0.00 -0.16 5.30 84.95 0.45 0.29 16 7 N -0.88 -47.29 7.89 21.68 0.17 -47.12 16 8 Si 1.00 44.29 29.55 68.60 2.03 46.32 16 9 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 11 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 12 C 0.50 29.42 7.56 86.72 0.66 30.07 16 13 O -0.64 -41.73 16.63 -4.08 -0.07 -41.79 16 14 C -0.03 -1.25 6.60 42.43 0.28 -0.96 16 15 C -0.22 -8.80 10.74 22.42 0.24 -8.55 16 16 C 0.02 0.55 6.92 41.40 0.29 0.84 16 17 C -0.08 -1.21 9.92 71.24 0.71 -0.50 16 18 N -0.27 -8.25 2.92 -314.20 -0.92 -9.16 16 19 C 0.17 3.40 3.13 44.99 0.14 3.54 16 20 H 0.14 1.67 6.30 -2.39 -0.02 1.65 16 21 C -0.16 -2.89 9.34 71.98 0.67 -2.21 16 22 C -0.18 -3.61 5.21 -10.80 -0.06 -3.66 16 23 C -0.13 -1.67 10.18 30.59 0.31 -1.36 16 24 C -0.19 -3.98 10.12 30.59 0.31 -3.67 16 25 N -0.25 -10.28 6.81 -48.20 -0.33 -10.61 16 26 H 0.02 0.85 6.85 -2.39 -0.02 0.83 16 27 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.05 2.63 6.27 -2.38 -0.01 2.62 16 29 H 0.07 3.16 5.50 -2.39 -0.01 3.15 16 30 H 0.08 4.57 5.85 -2.38 -0.01 4.56 16 31 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 32 H 0.15 5.71 8.06 -2.91 -0.02 5.68 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 0.93 7.02 -2.39 -0.02 0.92 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.10 2.38 8.11 -2.39 -0.02 2.36 16 40 H 0.12 0.92 8.05 -2.39 -0.02 0.90 16 41 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -78.72 347.11 6.06 -72.66 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 1.00 Total: 20.43 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 5.86 Total: -3.42 kcal Atomic # 7 Polarization: -91.43 SS G_CDS: -2.76 Total: -94.19 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -0.07 Total: -41.79 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -78.72 6.06 -72.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000538531747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.714 kcal (2) G-P(sol) polarization free energy of solvation -78.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds