Wall clock time and date at job start Tue Mar 31 2020 06:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47390 * 2 1 4 4 C 1.34952 * 126.03795 * 124.99991 * 3 2 1 5 5 C 1.35309 * 107.74486 * 180.02562 * 4 3 2 6 6 C 1.50700 * 126.03922 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46869 * 90.00033 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46931 * 120.63086 * 0.02562 * 9 7 6 11 11 C 1.52760 * 109.00543 * 233.58109 * 10 9 7 12 12 C 1.53039 * 109.38459 * 305.58756 * 11 10 9 13 13 C 1.50707 * 109.45054 * 181.25601 * 12 11 10 14 14 H 1.07999 * 119.99774 * 239.93637 * 13 12 11 15 15 C 1.37874 * 119.99761 * 59.93415 * 13 12 11 16 16 N 1.31516 * 120.00171 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99783 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46808 * 90.00436 * 17 15 13 19 19 H 1.48502 * 109.46859 * 210.00205 * 17 15 13 20 20 H 1.48503 * 109.46817 * 330.00200 * 17 15 13 21 21 C 1.53042 * 109.54031 * 61.24177 * 12 11 10 22 22 C 1.46925 * 120.62933 * 180.27723 * 9 7 6 23 23 C 1.39862 * 107.92412 * 0.26482 * 5 4 3 24 24 N 1.30839 * 108.20322 * 359.55554 * 23 5 4 25 25 H 1.08990 * 109.47073 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46583 * 299.99761 * 1 2 3 27 27 H 1.08996 * 109.47127 * 59.99994 * 1 2 3 28 28 H 1.09009 * 109.47007 * 240.00290 * 2 1 3 29 29 H 1.08993 * 109.47280 * 120.00523 * 2 1 3 30 30 H 1.08001 * 126.12616 * 0.02562 * 4 3 2 31 31 H 1.09004 * 109.47210 * 330.00326 * 6 5 4 32 32 H 1.08994 * 109.47551 * 209.99978 * 6 5 4 33 33 H 1.08997 * 109.58191 * 353.41302 * 10 9 7 34 34 H 1.09000 * 109.58404 * 113.84014 * 10 9 7 35 35 H 1.09004 * 109.56227 * 185.55021 * 11 10 9 36 36 H 1.08994 * 109.36282 * 65.49817 * 11 10 9 37 37 H 1.09005 * 109.46040 * 301.21818 * 12 11 10 38 38 H 0.97004 * 119.99633 * 180.02562 * 16 15 13 39 39 H 1.08994 * 109.49700 * 178.68705 * 21 12 11 40 40 H 1.08997 * 109.52427 * 58.60198 * 21 12 11 41 41 H 1.09005 * 109.58470 * 246.15337 * 22 9 7 42 42 H 1.08995 * 109.58817 * 6.44095 * 22 9 7 43 43 H 1.07999 * 125.90337 * 179.74016 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8732 1.9211 0.8939 5 6 3.0714 3.2136 0.5463 6 6 3.9542 4.2001 1.2666 7 6 5.3460 4.1415 0.6918 8 8 5.5964 3.3746 -0.2138 9 7 6.3111 4.9457 1.1801 10 6 6.0216 5.8842 2.2729 11 6 6.4504 7.2880 1.8497 12 6 7.9177 7.2617 1.4154 13 6 8.3510 8.6518 1.0268 14 1 8.7066 8.8465 0.0258 15 6 8.2935 9.6749 1.9493 16 7 7.8610 9.4376 3.1684 17 14 8.8301 11.3981 1.4674 18 1 7.6650 12.1480 0.9331 19 1 9.3664 12.1012 2.6604 20 1 9.8852 11.3149 0.4258 21 6 8.0801 6.3234 0.2172 22 6 7.6713 4.9043 0.6260 23 6 2.3071 3.4744 -0.5956 24 7 1.6801 2.3750 -0.9275 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.3192 1.4125 1.7359 31 1 3.9882 3.9504 2.3271 32 1 3.5520 5.2055 1.1427 33 1 4.9527 5.8787 2.4856 34 1 6.5753 5.5891 3.1642 35 1 6.3314 7.9743 2.6881 36 1 5.8304 7.6195 1.0168 37 1 8.5345 6.9065 2.2410 38 1 7.8202 10.1575 3.8172 39 1 9.1210 6.3231 -0.1061 40 1 7.4451 6.6638 -0.6007 41 1 8.3620 4.5280 1.3807 42 1 7.6910 4.2505 -0.2458 43 1 2.2472 4.4191 -1.1155 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548374707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:35 Heat of formation + Delta-G solvation = 30.816994 kcal Electronic energy + Delta-G solvation = -23087.182652 eV Core-core repulsion = 19747.655767 eV Total energy + Delta-G solvation = -3339.526884 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.22590 -39.44587 -36.74070 -34.71808 -33.47313 -32.16749 -30.97503 -30.24217 -29.97776 -27.15517 -25.81724 -23.91926 -22.90274 -22.24630 -20.79341 -20.53857 -19.54207 -18.17485 -16.98617 -16.87508 -16.10913 -15.56002 -15.16886 -14.92533 -14.55877 -14.37407 -14.14387 -13.41096 -13.25078 -13.09944 -13.01836 -12.74498 -12.47175 -12.45618 -12.33341 -12.26054 -11.67042 -11.62872 -11.45517 -11.26641 -10.93699 -10.63495 -10.49619 -10.36024 -10.09524 -9.63372 -9.37513 -9.34644 -9.15286 -8.91920 -8.38010 -8.28912 -7.93465 -6.03248 -4.09059 1.92664 2.47147 2.82109 3.11186 3.28389 3.35484 3.39068 3.68512 4.30004 4.41072 4.66875 4.77657 4.90150 4.98635 5.09244 5.21480 5.26393 5.26697 5.44089 5.45003 5.61344 5.73892 5.80897 5.85793 5.89033 5.99765 6.10697 6.18043 6.19315 6.34246 6.49255 6.68970 6.69195 6.93544 7.01890 7.06934 7.18537 7.29862 7.67290 7.73524 7.92880 8.01253 8.05597 8.40836 8.69576 8.94396 9.56056 11.02238 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.037671 B = 0.002926 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.094833 B = 9567.189354 C = 9759.350091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.132 3.868 3 N -0.376 5.376 4 C 0.064 3.936 5 C -0.211 4.211 6 C -0.060 4.060 7 C 0.510 3.490 8 O -0.553 6.553 9 N -0.603 5.603 10 C 0.104 3.896 11 C -0.125 4.125 12 C 0.048 3.952 13 C -0.511 4.511 14 H 0.054 0.946 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.123 4.123 22 C 0.112 3.888 23 C 0.063 3.937 24 N -0.299 5.299 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.169 0.831 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.039 0.961 37 H 0.027 0.973 38 H 0.260 0.740 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.992 -15.340 -0.112 19.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.011 3.989 3 N -0.159 5.159 4 C -0.082 4.082 5 C -0.223 4.223 6 C -0.101 4.101 7 C 0.298 3.702 8 O -0.432 6.432 9 N -0.336 5.336 10 C -0.019 4.019 11 C -0.164 4.164 12 C 0.030 3.970 13 C -0.549 4.549 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.161 4.161 22 C -0.010 4.010 23 C -0.123 4.123 24 N -0.120 5.120 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.186 0.814 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.122 0.878 36 H 0.058 0.942 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -12.738 -16.368 -1.238 20.777 hybrid contribution 0.969 1.490 0.484 1.842 sum -11.768 -14.878 -0.754 18.985 Atomic orbital electron populations 1.22049 0.93949 1.02633 1.03577 1.21622 0.95868 0.77816 1.03603 1.48535 1.36048 1.09996 1.21296 1.22202 0.95217 0.94346 0.96422 1.19482 1.06591 0.94869 1.01368 1.19935 0.91111 0.99401 0.99683 1.20622 0.86574 0.80138 0.82878 1.90638 1.82571 1.39736 1.30209 1.48272 1.10488 1.38331 1.36541 1.21946 0.99819 0.91538 0.88555 1.21946 0.98998 0.92844 1.02594 1.18634 0.92460 0.93589 0.92322 1.21217 1.42509 0.93495 0.97681 0.92735 1.24954 0.95228 0.98836 0.94951 1.69835 1.47161 1.32379 1.03768 0.86625 0.78916 0.84661 0.77985 1.20729 1.21270 1.19985 1.22007 1.00038 0.93496 1.00581 1.21656 0.81888 0.99011 0.98426 1.23723 0.95505 0.97397 0.95710 1.77256 1.24620 0.96716 1.13428 0.90900 0.92122 0.91106 0.89990 0.88858 0.81381 0.88744 0.88141 0.91335 0.92074 0.87765 0.94240 0.95509 0.93002 0.92304 0.92990 0.92470 0.90523 0.80307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 10.10 37.16 0.38 -0.76 16 2 C 0.13 1.05 7.23 -4.04 -0.03 1.02 16 3 N -0.38 -4.56 3.68 -61.36 -0.23 -4.78 16 4 C 0.06 0.77 11.36 -17.22 -0.20 0.58 16 5 C -0.21 -2.87 4.59 -105.06 -0.48 -3.35 16 6 C -0.06 -0.79 4.53 -29.03 -0.13 -0.92 16 7 C 0.51 8.72 7.69 -10.98 -0.08 8.64 16 8 O -0.55 -11.28 15.45 5.55 0.09 -11.20 16 9 N -0.60 -10.62 2.98 -173.00 -0.52 -11.14 16 10 C 0.10 1.77 6.32 -3.93 -0.02 1.74 16 11 C -0.13 -2.69 5.14 -26.83 -0.14 -2.82 16 12 C 0.05 1.14 2.07 -91.73 -0.19 0.95 16 13 C -0.51 -13.52 8.56 -34.44 -0.29 -13.82 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 16 N -0.89 -24.17 11.31 55.43 0.63 -23.54 16 17 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 C -0.12 -2.53 5.30 -26.59 -0.14 -2.67 16 22 C 0.11 2.07 6.44 -3.69 -0.02 2.05 16 23 C 0.06 0.88 11.96 -17.37 -0.21 0.68 16 24 N -0.30 -4.32 12.42 30.62 0.38 -3.94 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.09 0.49 8.07 -51.93 -0.42 0.08 16 30 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.09 1.02 7.95 -51.93 -0.41 0.60 16 32 H 0.10 1.21 7.68 -51.93 -0.40 0.81 16 33 H 0.07 0.96 5.93 -51.93 -0.31 0.66 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.10 2.49 6.03 -51.93 -0.31 2.17 16 36 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.08 1.43 7.00 -51.93 -0.36 1.07 16 43 H 0.18 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 349.53 15.07 5.27 5.27 Total: -1.00 -31.93 349.53 -7.89 -39.82 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.83 Total: 0.96 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -1.66 Total: -7.17 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.27 Total: -43.41 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.93 -7.89 -39.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548374707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.640 kcal (2) G-P(sol) polarization free energy of solvation -31.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds