Wall clock time and date at job start Tue Mar 31 2020 06:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47390 * 2 1 4 4 C 1.34952 * 126.03795 * 124.99991 * 3 2 1 5 5 C 1.35309 * 107.74486 * 180.02562 * 4 3 2 6 6 C 1.50700 * 126.03922 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46869 * 90.00033 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46931 * 120.63086 * 0.02562 * 9 7 6 11 11 C 1.52760 * 109.00543 * 233.58109 * 10 9 7 12 12 C 1.53039 * 109.38459 * 305.58756 * 11 10 9 13 13 C 1.50707 * 109.45054 * 181.25601 * 12 11 10 14 14 H 1.07999 * 119.99774 * 239.93637 * 13 12 11 15 15 C 1.37874 * 119.99761 * 59.93415 * 13 12 11 16 16 N 1.31516 * 120.00171 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99783 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46808 * 90.00436 * 17 15 13 19 19 H 1.48502 * 109.46859 * 210.00205 * 17 15 13 20 20 H 1.48503 * 109.46817 * 330.00200 * 17 15 13 21 21 C 1.53042 * 109.54031 * 61.24177 * 12 11 10 22 22 C 1.46925 * 120.62933 * 180.27723 * 9 7 6 23 23 C 1.39862 * 107.92412 * 0.26482 * 5 4 3 24 24 N 1.30839 * 108.20322 * 359.55554 * 23 5 4 25 25 H 1.08990 * 109.47073 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46583 * 299.99761 * 1 2 3 27 27 H 1.08996 * 109.47127 * 59.99994 * 1 2 3 28 28 H 1.09009 * 109.47007 * 240.00290 * 2 1 3 29 29 H 1.08993 * 109.47280 * 120.00523 * 2 1 3 30 30 H 1.08001 * 126.12616 * 0.02562 * 4 3 2 31 31 H 1.09004 * 109.47210 * 330.00326 * 6 5 4 32 32 H 1.08994 * 109.47551 * 209.99978 * 6 5 4 33 33 H 1.08997 * 109.58191 * 353.41302 * 10 9 7 34 34 H 1.09000 * 109.58404 * 113.84014 * 10 9 7 35 35 H 1.09004 * 109.56227 * 185.55021 * 11 10 9 36 36 H 1.08994 * 109.36282 * 65.49817 * 11 10 9 37 37 H 1.09005 * 109.46040 * 301.21818 * 12 11 10 38 38 H 0.97004 * 119.99633 * 180.02562 * 16 15 13 39 39 H 1.08994 * 109.49700 * 178.68705 * 21 12 11 40 40 H 1.08997 * 109.52427 * 58.60198 * 21 12 11 41 41 H 1.09005 * 109.58470 * 246.15337 * 22 9 7 42 42 H 1.08995 * 109.58817 * 6.44095 * 22 9 7 43 43 H 1.07999 * 125.90337 * 179.74016 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8732 1.9211 0.8939 5 6 3.0714 3.2136 0.5463 6 6 3.9542 4.2001 1.2666 7 6 5.3460 4.1415 0.6918 8 8 5.5964 3.3746 -0.2138 9 7 6.3111 4.9457 1.1801 10 6 6.0216 5.8842 2.2729 11 6 6.4504 7.2880 1.8497 12 6 7.9177 7.2617 1.4154 13 6 8.3510 8.6518 1.0268 14 1 8.7066 8.8465 0.0258 15 6 8.2935 9.6749 1.9493 16 7 7.8610 9.4376 3.1684 17 14 8.8301 11.3981 1.4674 18 1 7.6650 12.1480 0.9331 19 1 9.3664 12.1012 2.6604 20 1 9.8852 11.3149 0.4258 21 6 8.0801 6.3234 0.2172 22 6 7.6713 4.9043 0.6260 23 6 2.3071 3.4744 -0.5956 24 7 1.6801 2.3750 -0.9275 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.3192 1.4125 1.7359 31 1 3.9882 3.9504 2.3271 32 1 3.5520 5.2055 1.1427 33 1 4.9527 5.8787 2.4856 34 1 6.5753 5.5891 3.1642 35 1 6.3314 7.9743 2.6881 36 1 5.8304 7.6195 1.0168 37 1 8.5345 6.9065 2.2410 38 1 7.8202 10.1575 3.8172 39 1 9.1210 6.3231 -0.1061 40 1 7.4451 6.6638 -0.6007 41 1 8.3620 4.5280 1.3807 42 1 7.6910 4.2505 -0.2458 43 1 2.2472 4.4191 -1.1155 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548374707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:34 Heat of formation + Delta-G solvation = 12.415140 kcal Electronic energy + Delta-G solvation = -23087.980616 eV Core-core repulsion = 19747.655767 eV Total energy + Delta-G solvation = -3340.324849 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.16779 -40.83685 -38.31089 -35.48073 -35.26087 -33.47253 -32.49447 -31.58201 -31.00091 -28.45076 -27.35177 -24.78602 -24.45630 -23.79986 -21.89824 -21.58115 -20.86925 -19.59741 -18.55029 -17.88132 -17.78008 -16.66968 -16.44913 -16.26895 -16.15793 -15.27853 -14.99863 -14.87547 -14.72998 -14.58751 -14.22110 -14.13334 -13.82358 -13.62437 -13.29171 -13.09949 -13.04651 -12.95788 -12.79814 -12.59533 -12.43257 -12.22217 -12.10863 -11.87348 -11.43651 -11.41957 -10.97299 -10.90119 -10.62587 -10.35730 -10.30105 -9.44239 -9.25474 -8.05542 -6.18175 1.01330 1.42419 1.44763 1.53256 1.68228 1.77097 1.82119 2.37286 2.45950 3.20909 3.60140 3.85128 4.00608 4.10242 4.13744 4.22918 4.29415 4.34337 4.37693 4.46444 4.50153 4.57701 4.62750 4.75058 4.76986 4.83648 4.88454 4.93805 5.00548 5.04792 5.21950 5.23619 5.24694 5.32026 5.48740 5.61993 5.70758 5.74682 6.03317 6.19401 6.21804 6.43245 6.66080 6.78497 6.90987 7.35270 7.49184 8.97670 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.037671 B = 0.002926 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.094833 B = 9567.189354 C = 9759.350091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.120 3.880 3 N -0.376 5.376 4 C 0.068 3.932 5 C -0.235 4.235 6 C -0.051 4.051 7 C 0.510 3.490 8 O -0.588 6.588 9 N -0.607 5.607 10 C 0.115 3.885 11 C -0.117 4.117 12 C 0.045 3.955 13 C -0.535 4.535 14 H 0.044 0.956 15 C 0.019 3.981 16 N -0.910 5.910 17 Si 0.946 3.054 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.275 1.275 21 C -0.113 4.113 22 C 0.118 3.882 23 C 0.044 3.956 24 N -0.331 5.331 25 H 0.099 0.901 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.083 0.917 29 H 0.126 0.874 30 H 0.202 0.798 31 H 0.126 0.874 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.028 0.972 37 H 0.004 0.996 38 H 0.262 0.738 39 H 0.059 0.941 40 H 0.039 0.961 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.864 -16.504 0.964 20.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.001 3.999 3 N -0.159 5.159 4 C -0.079 4.079 5 C -0.247 4.247 6 C -0.091 4.091 7 C 0.300 3.700 8 O -0.469 6.469 9 N -0.339 5.339 10 C -0.007 4.007 11 C -0.156 4.156 12 C 0.027 3.973 13 C -0.573 4.573 14 H 0.062 0.938 15 C -0.180 4.180 16 N -0.549 5.549 17 Si 0.772 3.228 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.200 1.200 21 C -0.152 4.152 22 C -0.005 4.005 23 C -0.141 4.141 24 N -0.153 5.153 25 H 0.118 0.882 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.102 0.898 29 H 0.144 0.856 30 H 0.218 0.782 31 H 0.144 0.856 32 H 0.131 0.869 33 H 0.125 0.875 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.047 0.953 37 H 0.022 0.978 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -13.628 -17.538 -0.165 22.211 hybrid contribution 1.254 1.796 0.122 2.194 sum -12.374 -15.742 -0.044 20.023 Atomic orbital electron populations 1.21994 0.93331 1.03960 1.02203 1.22032 0.96465 0.76096 1.05319 1.48923 1.35611 1.10824 1.20537 1.22757 0.94279 0.94084 0.96758 1.19649 1.07363 0.95877 1.01781 1.19948 0.87982 1.00176 1.01011 1.21351 0.87648 0.78959 0.82048 1.90624 1.83297 1.41194 1.31793 1.48327 1.10272 1.38622 1.36684 1.21849 1.02197 0.88489 0.88186 1.21724 0.97368 0.95401 1.01115 1.18613 0.93436 0.92770 0.92523 1.21545 1.43005 0.95355 0.97398 0.93774 1.25592 0.95362 1.01978 0.95045 1.69936 1.47471 1.33247 1.04274 0.85745 0.78515 0.80808 0.77686 1.20301 1.20777 1.19989 1.21853 0.99943 0.94426 0.98945 1.21502 0.83042 0.97125 0.98787 1.23993 0.95948 0.97804 0.96340 1.77189 1.25696 0.97541 1.14876 0.88207 0.92537 0.93344 0.89838 0.85567 0.78153 0.85606 0.86934 0.87499 0.91464 0.90109 0.95341 0.97834 0.92898 0.92281 0.94218 0.91403 0.90752 0.79748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 10.10 71.98 0.73 -1.17 16 2 C 0.12 1.63 7.23 86.38 0.62 2.26 16 3 N -0.38 -8.46 3.68 -348.05 -1.28 -9.74 16 4 C 0.07 1.47 11.36 83.54 0.95 2.41 16 5 C -0.23 -5.92 4.59 -20.15 -0.09 -6.01 16 6 C -0.05 -1.17 4.53 29.10 0.13 -1.04 16 7 C 0.51 16.43 7.69 87.66 0.67 17.10 16 8 O -0.59 -23.35 15.45 -3.04 -0.05 -23.40 16 9 N -0.61 -20.32 2.98 -819.64 -2.44 -22.76 16 10 C 0.11 3.67 6.32 86.22 0.54 4.22 16 11 C -0.12 -5.00 5.14 30.53 0.16 -4.85 16 12 C 0.05 2.15 2.07 -11.51 -0.02 2.12 16 13 C -0.53 -28.77 8.56 25.60 0.22 -28.55 16 14 H 0.04 2.40 7.74 -2.91 -0.02 2.37 16 15 C 0.02 1.03 5.30 84.65 0.45 1.48 16 16 N -0.91 -49.48 11.31 21.45 0.24 -49.24 16 17 Si 0.95 42.64 29.54 68.60 2.03 44.67 16 18 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 21 C -0.11 -4.70 5.30 30.69 0.16 -4.53 16 22 C 0.12 4.27 6.44 86.38 0.56 4.82 16 23 C 0.04 1.23 11.96 85.23 1.02 2.25 16 24 N -0.33 -9.41 12.42 -57.03 -0.71 -10.12 16 25 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.13 0.87 8.07 -2.39 -0.02 0.85 16 30 H 0.20 2.78 8.06 -2.91 -0.02 2.76 16 31 H 0.13 2.13 7.95 -2.38 -0.02 2.12 16 32 H 0.11 2.36 7.68 -2.39 -0.02 2.34 16 33 H 0.11 2.62 5.93 -2.39 -0.01 2.61 16 34 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.08 3.86 6.03 -2.38 -0.01 3.85 16 36 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 38 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 39 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 42 H 0.07 2.74 7.00 -2.39 -0.02 2.72 16 43 H 0.19 4.49 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -69.89 349.53 4.87 -65.02 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.98 Total: 15.07 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 6.10 Total: -9.49 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -4.19 Total: -91.86 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.05 Total: -23.40 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -69.89 4.87 -65.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548374707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.434 kcal (2) G-P(sol) polarization free energy of solvation -69.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds