Wall clock time and date at job start Tue Mar 31 2020 07:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34949 * 126.03788 * 2 1 4 4 C 1.35321 * 107.74777 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.04018 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47197 * 89.99237 * 5 4 3 7 7 H 1.09001 * 110.88725 * 51.12317 * 6 5 4 8 8 C 1.55154 * 111.00595 * 287.19373 * 6 5 4 9 9 C 1.54315 * 102.86480 * 206.22821 * 8 6 5 10 10 N 1.47021 * 107.27409 * 22.53033 * 9 8 6 11 11 C 1.34777 * 125.65024 * 180.97007 * 10 9 8 12 12 O 1.21283 * 120.00463 * 179.69059 * 11 10 9 13 13 C 1.50700 * 119.99675 * 359.41182 * 11 10 9 14 14 C 1.53004 * 109.47208 * 180.27843 * 13 11 10 15 15 C 1.50700 * 109.47208 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99770 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99720 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00078 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99915 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47039 * 59.99494 * 19 17 15 21 21 H 1.48494 * 109.47228 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47130 * 300.00212 * 19 17 15 23 23 C 1.47426 * 108.70410 * 0.69761 * 10 9 8 24 24 C 1.39872 * 107.91767 * 0.25508 * 4 3 2 25 25 N 1.30843 * 108.20405 * 359.56402 * 24 4 3 26 26 H 1.09003 * 109.47049 * 90.00342 * 1 2 3 27 27 H 1.08994 * 109.47219 * 209.99594 * 1 2 3 28 28 H 1.08998 * 109.47191 * 330.00802 * 1 2 3 29 29 H 1.07994 * 126.12797 * 359.95001 * 3 2 1 30 30 H 1.09000 * 109.47272 * 329.99079 * 5 4 3 31 31 H 1.09006 * 109.46588 * 209.99155 * 5 4 3 32 32 H 1.08996 * 110.71995 * 324.78638 * 8 6 5 33 33 H 1.08997 * 110.71804 * 87.88622 * 8 6 5 34 34 H 1.08996 * 109.99184 * 263.05031 * 9 8 6 35 35 H 1.09003 * 109.77021 * 141.88327 * 9 8 6 36 36 H 1.09009 * 109.47352 * 300.27556 * 13 11 10 37 37 H 1.08998 * 109.47585 * 60.27844 * 13 11 10 38 38 H 1.09000 * 109.46887 * 300.00372 * 14 13 11 39 39 H 1.08998 * 109.46846 * 59.99549 * 14 13 11 40 40 H 0.97008 * 119.99515 * 180.02562 * 18 17 15 41 41 H 1.09005 * 110.36361 * 94.94383 * 23 10 9 42 42 H 1.09001 * 110.37156 * 217.15202 * 23 10 9 43 43 H 1.07994 * 125.89752 * 179.73839 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7680 1.5453 0.0013 6 6 5.1815 1.8426 1.4440 7 1 5.2591 0.9227 2.0235 8 6 4.1969 2.8394 2.1106 9 6 5.0704 3.5170 3.1873 10 7 6.4725 3.3627 2.7726 11 6 7.5470 3.8035 3.4565 12 8 8.6628 3.6148 3.0202 13 6 7.3616 4.5363 4.7602 14 6 8.7289 4.9303 5.3227 15 6 8.5436 5.6626 6.6267 16 1 7.5499 5.8306 7.0152 17 6 9.6425 6.1180 7.3238 18 7 10.8524 5.9138 6.8504 19 14 9.4128 7.0264 8.9398 20 1 8.7138 6.1442 9.9085 21 1 10.7398 7.4086 9.4858 22 1 8.6020 8.2491 8.7095 23 6 6.5088 2.6401 1.4881 24 6 3.5347 -0.7321 -0.0050 25 7 2.2891 -1.1328 0.0007 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5137 28 1 -0.3633 0.8900 0.5137 29 1 1.9281 2.1193 -0.0008 30 1 4.5445 2.4802 -0.5126 31 1 5.5824 1.0341 -0.5121 32 1 3.8371 3.5692 1.3854 33 1 3.3622 2.3088 2.5686 34 1 4.9139 3.0345 4.1520 35 1 4.8181 4.5753 3.2544 36 1 6.7661 5.4336 4.5912 37 1 6.8491 3.8887 5.4715 38 1 9.3244 4.0331 5.4916 39 1 9.2414 5.5779 4.6114 40 1 11.6256 6.2339 7.3411 41 1 6.5558 3.3447 0.6577 42 1 7.3618 1.9622 1.4581 43 1 4.4053 -1.3710 -0.0100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000555228134.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:33 Heat of formation + Delta-G solvation = 28.633664 kcal Electronic energy + Delta-G solvation = -22359.915969 eV Core-core repulsion = 19020.294408 eV Total energy + Delta-G solvation = -3339.621561 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.50917 -39.66348 -37.41487 -34.27942 -33.42964 -32.85540 -31.04901 -30.23844 -29.39975 -27.71097 -26.01928 -24.80492 -23.05726 -21.54788 -21.21023 -20.70132 -20.13000 -18.57408 -17.10638 -16.93470 -16.11390 -15.83643 -15.66863 -14.99948 -14.77729 -14.43156 -14.23803 -13.92899 -13.76275 -13.41909 -13.27199 -12.99317 -12.73873 -12.52348 -12.47285 -12.15280 -12.03974 -11.79669 -11.36134 -11.09491 -10.91653 -10.87071 -10.81411 -10.64494 -10.58236 -9.90447 -9.71944 -9.61472 -9.14843 -8.98611 -8.62284 -8.32884 -8.26463 -5.92997 -3.97368 1.58795 2.21417 2.51174 3.29538 3.36212 3.37483 3.41128 3.43666 4.16603 4.37688 4.49568 4.51681 4.58553 4.71106 4.71836 4.84367 4.97676 5.12232 5.14176 5.27214 5.30131 5.41597 5.48541 5.51945 5.59067 5.65732 5.74724 5.77219 5.88552 5.90951 6.06014 6.21809 6.28204 6.29765 6.37601 6.63296 6.69463 6.94436 7.40104 7.77379 7.90356 7.93435 8.10900 8.42004 8.81122 9.10975 9.65756 11.17940 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.035442 B = 0.002437 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.839590 B =11485.370761 C =11979.966084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.379 5.379 3 C 0.056 3.944 4 C -0.229 4.229 5 C -0.029 4.029 6 C -0.095 4.095 7 H 0.084 0.916 8 C -0.123 4.123 9 C 0.103 3.897 10 N -0.631 5.631 11 C 0.525 3.475 12 O -0.534 6.534 13 C -0.124 4.124 14 C 0.037 3.963 15 C -0.527 4.527 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.108 3.892 24 C 0.053 3.947 25 N -0.300 5.300 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.172 0.828 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.261 0.739 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.832 -10.200 -15.945 29.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.162 5.162 3 C -0.090 4.090 4 C -0.240 4.240 5 C -0.068 4.068 6 C -0.115 4.115 7 H 0.102 0.898 8 C -0.161 4.161 9 C -0.020 4.020 10 N -0.368 5.368 11 C 0.316 3.684 12 O -0.410 6.410 13 C -0.164 4.164 14 C -0.001 4.001 15 C -0.565 4.565 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.015 4.015 24 C -0.134 4.134 25 N -0.122 5.122 26 H 0.091 0.909 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.189 0.811 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -22.905 -11.229 -16.075 30.152 hybrid contribution 0.265 1.231 0.949 1.577 sum -22.640 -9.998 -15.126 29.005 Atomic orbital electron populations 1.21840 0.74342 1.04504 1.03277 1.48454 1.06585 1.03932 1.57208 1.22331 0.90895 0.93257 1.02469 1.20048 0.94431 0.93889 1.15674 1.19801 0.93745 0.98028 0.95223 1.22393 0.94239 0.98393 0.96445 0.89754 1.22670 0.97602 0.98044 0.97755 1.21948 0.81276 1.00687 0.98120 1.48716 1.06291 1.58924 1.22898 1.21303 0.82660 0.78053 0.86355 1.90671 1.23801 1.56817 1.69680 1.21842 1.04247 0.98828 0.91472 1.18908 0.88885 0.97194 0.95095 1.21181 0.92639 1.36618 1.06069 0.92692 1.25029 0.95275 0.96238 0.97871 1.69993 0.97746 1.46233 1.38857 0.86649 0.77195 0.80174 0.83879 1.20263 1.21291 1.20268 1.22178 0.97643 0.95007 0.86633 1.23846 0.95146 0.94732 0.99627 1.77367 1.01814 1.08326 1.24664 0.90858 0.89361 0.89469 0.81124 0.91052 0.90641 0.90762 0.90556 0.91530 0.91502 0.90404 0.90419 0.95833 0.95833 0.92908 0.91930 0.90683 0.80094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.42 11.47 59.84 0.69 1.10 16 2 N -0.38 -3.07 4.01 -68.17 -0.27 -3.34 16 3 C 0.06 0.40 11.27 -17.22 -0.19 0.21 16 4 C -0.23 -1.85 5.13 -105.05 -0.54 -2.39 16 5 C -0.03 -0.21 5.21 -27.89 -0.15 -0.36 16 6 C -0.10 -0.87 2.99 -88.47 -0.26 -1.13 16 7 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 8 C -0.12 -1.02 6.06 -24.90 -0.15 -1.17 16 9 C 0.10 1.18 6.48 -3.07 -0.02 1.16 16 10 N -0.63 -9.76 3.33 -170.52 -0.57 -10.33 16 11 C 0.53 10.81 7.85 -10.98 -0.09 10.73 16 12 O -0.53 -13.27 16.24 5.55 0.09 -13.18 16 13 C -0.12 -2.64 4.83 -27.88 -0.13 -2.78 16 14 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 15 C -0.53 -15.21 9.11 -34.44 -0.31 -15.52 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -27.79 13.29 55.43 0.74 -27.05 16 19 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.11 1.36 6.38 -2.53 -0.02 1.35 16 24 C 0.05 0.48 11.96 -17.36 -0.21 0.27 16 25 N -0.30 -3.17 12.58 30.62 0.39 -2.78 16 26 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.17 0.73 8.06 -52.49 -0.42 0.30 16 30 H 0.07 0.47 7.97 -51.93 -0.41 0.05 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.52 7.91 -51.93 -0.41 0.11 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 1.52 8.14 -51.92 -0.42 1.10 16 37 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 41 H 0.06 0.75 8.04 -51.93 -0.42 0.33 16 42 H 0.07 1.05 8.03 -51.93 -0.42 0.63 16 43 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 360.49 15.07 5.43 5.43 Total: -1.00 -37.25 360.49 -7.93 -45.19 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -7.11 Total: -4.78 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -1.60 Total: -6.03 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.28 Total: -43.50 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -37.25 -7.93 -45.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000555228134.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.822 kcal (2) G-P(sol) polarization free energy of solvation -37.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds