Wall clock time and date at job start Tue Mar 31 2020 07:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34949 * 126.03788 * 2 1 4 4 C 1.35321 * 107.74777 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.04018 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47197 * 89.99237 * 5 4 3 7 7 H 1.09001 * 110.88725 * 51.12317 * 6 5 4 8 8 C 1.55154 * 111.00595 * 287.19373 * 6 5 4 9 9 C 1.54315 * 102.86480 * 206.22821 * 8 6 5 10 10 N 1.47021 * 107.27409 * 22.53033 * 9 8 6 11 11 C 1.34777 * 125.65024 * 180.97007 * 10 9 8 12 12 O 1.21283 * 120.00463 * 179.69059 * 11 10 9 13 13 C 1.50700 * 119.99675 * 359.41182 * 11 10 9 14 14 C 1.53004 * 109.47208 * 180.27843 * 13 11 10 15 15 C 1.50700 * 109.47208 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99770 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99720 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00078 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99915 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47039 * 59.99494 * 19 17 15 21 21 H 1.48494 * 109.47228 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47130 * 300.00212 * 19 17 15 23 23 C 1.47426 * 108.70410 * 0.69761 * 10 9 8 24 24 C 1.39872 * 107.91767 * 0.25508 * 4 3 2 25 25 N 1.30843 * 108.20405 * 359.56402 * 24 4 3 26 26 H 1.09003 * 109.47049 * 90.00342 * 1 2 3 27 27 H 1.08994 * 109.47219 * 209.99594 * 1 2 3 28 28 H 1.08998 * 109.47191 * 330.00802 * 1 2 3 29 29 H 1.07994 * 126.12797 * 359.95001 * 3 2 1 30 30 H 1.09000 * 109.47272 * 329.99079 * 5 4 3 31 31 H 1.09006 * 109.46588 * 209.99155 * 5 4 3 32 32 H 1.08996 * 110.71995 * 324.78638 * 8 6 5 33 33 H 1.08997 * 110.71804 * 87.88622 * 8 6 5 34 34 H 1.08996 * 109.99184 * 263.05031 * 9 8 6 35 35 H 1.09003 * 109.77021 * 141.88327 * 9 8 6 36 36 H 1.09009 * 109.47352 * 300.27556 * 13 11 10 37 37 H 1.08998 * 109.47585 * 60.27844 * 13 11 10 38 38 H 1.09000 * 109.46887 * 300.00372 * 14 13 11 39 39 H 1.08998 * 109.46846 * 59.99549 * 14 13 11 40 40 H 0.97008 * 119.99515 * 180.02562 * 18 17 15 41 41 H 1.09005 * 110.36361 * 94.94383 * 23 10 9 42 42 H 1.09001 * 110.37156 * 217.15202 * 23 10 9 43 43 H 1.07994 * 125.89752 * 179.73839 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7680 1.5453 0.0013 6 6 5.1815 1.8426 1.4440 7 1 5.2591 0.9227 2.0235 8 6 4.1969 2.8394 2.1106 9 6 5.0704 3.5170 3.1873 10 7 6.4725 3.3627 2.7726 11 6 7.5470 3.8035 3.4565 12 8 8.6628 3.6148 3.0202 13 6 7.3616 4.5363 4.7602 14 6 8.7289 4.9303 5.3227 15 6 8.5436 5.6626 6.6267 16 1 7.5499 5.8306 7.0152 17 6 9.6425 6.1180 7.3238 18 7 10.8524 5.9138 6.8504 19 14 9.4128 7.0264 8.9398 20 1 8.7138 6.1442 9.9085 21 1 10.7398 7.4086 9.4858 22 1 8.6020 8.2491 8.7095 23 6 6.5088 2.6401 1.4881 24 6 3.5347 -0.7321 -0.0050 25 7 2.2891 -1.1328 0.0007 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5137 28 1 -0.3633 0.8900 0.5137 29 1 1.9281 2.1193 -0.0008 30 1 4.5445 2.4802 -0.5126 31 1 5.5824 1.0341 -0.5121 32 1 3.8371 3.5692 1.3854 33 1 3.3622 2.3088 2.5686 34 1 4.9139 3.0345 4.1520 35 1 4.8181 4.5753 3.2544 36 1 6.7661 5.4336 4.5912 37 1 6.8491 3.8887 5.4715 38 1 9.3244 4.0331 5.4916 39 1 9.2414 5.5779 4.6114 40 1 11.6256 6.2339 7.3411 41 1 6.5558 3.3447 0.6577 42 1 7.3618 1.9622 1.4581 43 1 4.4053 -1.3710 -0.0100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000555228134.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:32 Heat of formation + Delta-G solvation = 4.065848 kcal Electronic energy + Delta-G solvation = -22360.981309 eV Core-core repulsion = 19020.294408 eV Total energy + Delta-G solvation = -3340.686901 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.07634 -40.98056 -38.69632 -35.58108 -35.03549 -33.63034 -32.91400 -31.18856 -30.23063 -28.54876 -27.52055 -25.87271 -24.25318 -23.04326 -21.99403 -21.48276 -20.81483 -19.96779 -18.79644 -17.70151 -17.59930 -17.10959 -16.53794 -16.32107 -16.23116 -15.65473 -15.29770 -14.91556 -14.51054 -14.30385 -14.18313 -13.99986 -13.89406 -13.68806 -13.40637 -13.30482 -13.14613 -12.97660 -12.77253 -12.70519 -12.51704 -12.12356 -11.94281 -11.62578 -11.58002 -11.54998 -11.32986 -11.27157 -10.73598 -10.56148 -10.29267 -9.59588 -9.18444 -8.17724 -6.32439 1.05091 1.41981 1.47105 1.54877 1.68695 1.78684 1.88898 2.12314 2.43921 3.14718 3.52145 3.72242 3.77989 4.01622 4.04634 4.13073 4.36369 4.39606 4.46494 4.47845 4.48760 4.53131 4.59137 4.64250 4.73132 4.74711 4.88788 4.92922 4.96000 5.03785 5.05165 5.15178 5.20192 5.40098 5.45707 5.51414 5.54723 5.61223 5.79615 5.84196 6.16844 6.25406 6.54065 6.82374 6.85571 7.26131 7.37796 8.94885 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.035442 B = 0.002437 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.839590 B =11485.370761 C =11979.966084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.384 5.384 3 C 0.065 3.935 4 C -0.242 4.242 5 C -0.019 4.019 6 C -0.081 4.081 7 H 0.073 0.927 8 C -0.109 4.109 9 C 0.090 3.910 10 N -0.623 5.623 11 C 0.520 3.480 12 O -0.594 6.594 13 C -0.111 4.111 14 C 0.043 3.957 15 C -0.544 4.544 16 H 0.076 0.924 17 C -0.008 4.008 18 N -0.938 5.938 19 Si 0.977 3.023 20 H -0.262 1.262 21 H -0.287 1.287 22 H -0.261 1.261 23 C 0.101 3.899 24 C 0.038 3.962 25 N -0.344 5.344 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.115 0.885 29 H 0.206 0.794 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.098 0.902 38 H -0.020 1.020 39 H -0.018 1.018 40 H 0.263 0.737 41 H 0.074 0.926 42 H 0.052 0.948 43 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.584 -9.002 -15.612 32.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.166 5.166 3 C -0.081 4.081 4 C -0.254 4.254 5 C -0.058 4.058 6 C -0.100 4.100 7 H 0.091 0.909 8 C -0.147 4.147 9 C -0.032 4.032 10 N -0.357 5.357 11 C 0.311 3.689 12 O -0.475 6.475 13 C -0.150 4.150 14 C 0.005 3.995 15 C -0.582 4.582 16 H 0.094 0.906 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.800 3.200 20 H -0.187 1.187 21 H -0.213 1.213 22 H -0.185 1.185 23 C -0.022 4.022 24 C -0.147 4.147 25 N -0.166 5.166 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.134 0.866 29 H 0.223 0.777 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.120 0.880 37 H 0.116 0.884 38 H -0.002 1.002 39 H 0.000 1.000 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -26.754 -10.059 -15.764 32.642 hybrid contribution 1.368 0.812 0.769 1.767 sum -25.386 -9.246 -14.995 30.900 Atomic orbital electron populations 1.22147 0.72430 1.05756 1.04389 1.48797 1.07809 1.03601 1.56435 1.22876 0.90396 0.94384 1.00482 1.20113 0.95131 0.93323 1.16822 1.19706 0.93574 0.98719 0.93764 1.22278 0.92292 0.97561 0.97890 0.90857 1.22682 0.96927 0.97961 0.97098 1.22347 0.79053 1.02172 0.99613 1.48654 1.06929 1.57007 1.23145 1.21072 0.83034 0.78301 0.86492 1.90643 1.26333 1.59445 1.71039 1.21575 1.00616 1.00424 0.92406 1.18690 0.91645 0.94469 0.94671 1.21663 0.93711 1.36433 1.06377 0.90579 1.26181 0.94731 0.97173 1.02489 1.70184 0.98980 1.47640 1.40965 0.85336 0.77343 0.79079 0.78249 1.18665 1.21296 1.18541 1.22423 0.99099 0.95139 0.85495 1.24131 0.95210 0.95830 0.99557 1.77305 1.02672 1.10219 1.26424 0.89813 0.89742 0.86640 0.77722 0.89343 0.90790 0.88263 0.88782 0.91127 0.90134 0.88032 0.88365 1.00155 0.99976 0.92820 0.90742 0.92958 0.79497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.52 11.47 127.77 1.47 1.99 16 2 N -0.38 -5.31 4.01 -369.58 -1.48 -6.79 16 3 C 0.07 0.70 11.27 83.54 0.94 1.64 16 4 C -0.24 -3.32 5.13 -20.14 -0.10 -3.42 16 5 C -0.02 -0.23 5.21 29.85 0.16 -0.07 16 6 C -0.08 -1.28 2.99 -9.40 -0.03 -1.31 16 7 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 8 C -0.11 -1.36 6.06 31.78 0.19 -1.17 16 9 C 0.09 1.79 6.48 86.73 0.56 2.35 16 10 N -0.62 -18.73 3.33 -811.80 -2.70 -21.43 16 11 C 0.52 21.91 7.85 87.66 0.69 22.60 16 12 O -0.59 -31.28 16.24 -3.04 -0.05 -31.33 16 13 C -0.11 -4.73 4.83 29.85 0.14 -4.58 16 14 C 0.04 2.48 4.26 29.85 0.13 2.61 16 15 C -0.54 -31.66 9.11 25.60 0.23 -31.43 16 16 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 17 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 18 N -0.94 -60.55 13.29 21.45 0.28 -60.26 16 19 Si 0.98 44.76 29.54 68.60 2.03 46.79 16 20 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 21 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 22 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 23 C 0.10 2.46 6.38 86.85 0.55 3.01 16 24 C 0.04 0.66 11.96 85.24 1.02 1.68 16 25 N -0.34 -6.96 12.58 -57.02 -0.72 -7.68 16 26 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 27 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.21 0.62 8.06 -2.91 -0.02 0.59 16 30 H 0.09 0.80 7.97 -2.39 -0.02 0.78 16 31 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.10 0.82 7.91 -2.39 -0.02 0.80 16 33 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.10 3.82 8.14 -2.38 -0.02 3.81 16 37 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 38 H -0.02 -1.31 8.10 -2.39 -0.02 -1.33 16 39 H -0.02 -1.19 8.10 -2.39 -0.02 -1.20 16 40 H 0.26 15.89 8.31 -92.70 -0.77 15.12 16 41 H 0.07 1.67 8.04 -2.38 -0.02 1.65 16 42 H 0.05 1.52 8.03 -2.39 -0.02 1.50 16 43 H 0.19 2.66 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -86.28 360.49 4.75 -81.54 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: 0.97 Total: 5.31 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 6.41 Total: -6.14 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -4.62 Total: -96.16 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -0.05 Total: -31.33 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -86.28 4.75 -81.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000555228134.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.602 kcal (2) G-P(sol) polarization free energy of solvation -86.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds