Wall clock time and date at job start Tue Mar 31 2020 06:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47232 * 2 1 4 4 C 1.34943 * 126.04301 * 125.01866 * 3 2 1 5 5 C 1.35312 * 107.74841 * 180.02562 * 4 3 2 6 6 C 1.50703 * 126.04280 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.46698 * 269.97132 * 6 5 4 8 8 O 1.21298 * 120.00462 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00154 * 179.97438 * 7 6 5 10 10 C 1.37098 * 120.00178 * 179.97438 * 9 7 6 11 11 H 1.08002 * 119.99484 * 141.31748 * 10 9 7 12 12 C 1.38945 * 120.00000 * 321.31765 * 10 9 7 13 13 N 1.31411 * 119.99663 * 157.42941 * 12 10 9 14 14 Si 1.86798 * 120.00156 * 337.43569 * 12 10 9 15 15 H 1.48506 * 109.47077 * 94.41177 * 14 12 10 16 16 H 1.48497 * 109.47096 * 214.40825 * 14 12 10 17 17 H 1.48499 * 109.47071 * 334.41314 * 14 12 10 18 18 C 1.46505 * 119.99502 * 359.97438 * 9 7 6 19 19 C 1.54267 * 110.03505 * 242.61428 * 18 9 7 20 20 C 1.54965 * 104.15934 * 217.14141 * 19 18 9 21 21 C 1.54885 * 102.77756 * 37.88608 * 20 19 18 22 22 C 1.53881 * 110.02783 * 125.39625 * 18 9 7 23 23 C 1.39870 * 107.92037 * 359.97438 * 5 4 3 24 24 N 1.30839 * 108.20077 * 0.02562 * 23 5 4 25 25 H 1.09003 * 109.47297 * 299.99813 * 1 2 3 26 26 H 1.08994 * 109.47094 * 60.00824 * 1 2 3 27 27 H 1.09000 * 109.46898 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47561 * 239.99705 * 2 1 3 29 29 H 1.09004 * 109.47192 * 119.99353 * 2 1 3 30 30 H 1.08004 * 126.12560 * 0.02562 * 4 3 2 31 31 H 1.09008 * 109.47019 * 29.96690 * 6 5 4 32 32 H 1.08995 * 109.47114 * 149.96930 * 6 5 4 33 33 H 0.97006 * 119.99886 * 179.97438 * 13 12 10 34 34 H 1.09004 * 110.01724 * 4.00964 * 18 9 7 35 35 H 1.09002 * 110.48273 * 335.78981 * 19 18 9 36 36 H 1.09000 * 110.48336 * 98.42257 * 19 18 9 37 37 H 1.08997 * 110.71627 * 279.57201 * 20 19 18 38 38 H 1.08994 * 110.91673 * 156.29487 * 20 19 18 39 39 H 1.09003 * 110.48602 * 203.40641 * 21 20 19 40 40 H 1.09004 * 110.60095 * 80.82121 * 21 20 19 41 41 H 1.08998 * 110.03015 * 238.56949 * 22 18 9 42 42 H 1.09000 * 110.03027 * 0.02562 * 22 18 9 43 43 H 1.07999 * 125.90196 * 180.26273 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8733 1.9211 0.8936 5 6 3.0714 3.2138 0.5461 6 6 3.9551 4.2000 1.2654 7 6 3.1528 4.9165 2.3208 8 8 1.9788 4.6527 2.4735 9 7 3.7398 5.8506 3.0951 10 6 3.0098 6.5029 4.0549 11 1 3.4570 6.7312 5.0112 12 6 1.6948 6.8702 3.7974 13 7 0.8632 7.0768 4.7938 14 14 1.1088 7.0701 2.0350 15 1 0.4852 5.8036 1.5741 16 1 0.1101 8.1669 1.9669 17 1 2.2652 7.3985 1.1632 18 6 5.1580 6.1688 2.9111 19 6 5.9471 5.8258 4.1915 20 6 7.0046 6.9535 4.2986 21 6 6.2222 8.2030 3.8238 22 6 5.3331 7.6796 2.6770 23 6 2.3118 3.4726 -0.5995 24 7 1.6800 2.3749 -0.9276 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5137 0.8901 30 1 3.3196 1.4125 1.7354 31 1 4.7832 3.6698 1.7361 32 1 4.3465 4.9249 0.5518 33 1 -0.0548 7.3336 4.6141 34 1 5.5588 5.6109 2.0647 35 1 5.2885 5.8370 5.0600 36 1 6.4322 4.8548 4.0920 37 1 7.8496 6.7534 3.6398 38 1 7.3400 7.0759 5.3284 39 1 6.9085 8.9661 3.4565 40 1 5.6080 8.6008 4.6316 41 1 5.8196 7.8548 1.7175 42 1 4.3629 8.1760 2.7007 43 1 2.2591 4.4147 -1.1250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000559579292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:52 Heat of formation + Delta-G solvation = 50.543718 kcal Electronic energy + Delta-G solvation = -24132.904193 eV Core-core repulsion = 20794.232724 eV Total energy + Delta-G solvation = -3338.671469 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.90593 -39.13346 -36.96760 -34.46784 -33.40839 -32.06257 -31.15847 -29.92895 -28.13811 -27.18827 -26.81886 -24.13974 -23.44930 -20.62350 -20.42533 -20.20808 -19.76150 -18.80069 -16.88999 -16.65426 -15.98507 -15.27199 -15.25679 -14.63608 -14.26261 -14.10105 -13.96421 -13.70152 -13.31952 -12.88062 -12.83869 -12.59873 -12.45104 -12.10981 -11.96890 -11.91044 -11.52941 -11.46193 -11.34141 -10.94193 -10.70609 -10.61654 -10.53119 -10.22657 -10.09315 -9.92092 -9.90114 -9.75178 -9.07438 -8.42102 -8.35936 -7.91245 -7.45338 -6.08407 -3.78287 2.22036 2.76462 3.17175 3.41817 3.56144 3.80398 4.00748 4.53660 4.63234 4.71080 4.93117 5.07194 5.13443 5.13662 5.14752 5.28042 5.32749 5.46873 5.48143 5.61795 5.71242 5.78439 5.81069 5.89816 5.98805 6.05048 6.07835 6.10535 6.14846 6.20032 6.21876 6.36453 6.38637 6.52961 6.53941 6.79346 6.89560 6.97263 7.04317 7.32811 7.96423 8.02184 8.10818 8.93226 9.08768 9.58073 9.99623 10.96556 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017188 B = 0.005486 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.659657 B = 5102.389437 C = 5976.994213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.136 3.864 3 N -0.378 5.378 4 C 0.063 3.937 5 C -0.201 4.201 6 C -0.059 4.059 7 C 0.443 3.557 8 O -0.535 6.535 9 N -0.460 5.460 10 C -0.342 4.342 11 H 0.092 0.908 12 C 0.093 3.907 13 N -0.868 5.868 14 Si 0.908 3.092 15 H -0.251 1.251 16 H -0.316 1.316 17 H -0.282 1.282 18 C 0.128 3.872 19 C -0.131 4.131 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.130 4.130 23 C 0.060 3.940 24 N -0.303 5.303 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.168 0.832 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.269 0.731 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.084 0.916 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.622 -8.685 -7.542 14.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.014 3.986 3 N -0.162 5.162 4 C -0.083 4.083 5 C -0.212 4.212 6 C -0.101 4.101 7 C 0.232 3.768 8 O -0.417 6.417 9 N -0.182 5.182 10 C -0.467 4.467 11 H 0.110 0.890 12 C -0.115 4.115 13 N -0.504 5.504 14 Si 0.740 3.260 15 H -0.177 1.177 16 H -0.246 1.246 17 H -0.208 1.208 18 C 0.023 3.977 19 C -0.169 4.169 20 C -0.159 4.159 21 C -0.155 4.155 22 C -0.169 4.169 23 C -0.126 4.126 24 N -0.124 5.124 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.186 0.814 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.103 0.897 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 7.992 -9.495 -8.200 14.875 hybrid contribution 0.233 0.654 -0.103 0.702 sum 8.224 -8.841 -8.303 14.654 Atomic orbital electron populations 1.22055 0.94064 1.02378 1.03886 1.21563 0.95981 0.77916 1.03119 1.48477 1.36006 1.09895 1.21783 1.22154 0.95659 0.94924 0.95518 1.19540 1.07473 0.94191 1.00040 1.19945 0.96910 0.96435 0.96785 1.20346 0.88923 0.81759 0.85748 1.90536 1.15938 1.65307 1.69913 1.43829 1.07777 1.33457 1.33174 1.18604 0.94856 1.38756 0.94532 0.89011 1.25234 0.95507 0.92555 0.98231 1.69788 1.04795 1.43394 1.32408 0.86464 0.78179 0.76469 0.84869 1.17691 1.24590 1.20791 1.21777 0.84042 0.95235 0.96643 1.22715 0.97139 0.97175 0.99910 1.22439 0.97395 0.95797 1.00297 1.22263 0.97701 0.96775 0.98782 1.22421 1.01184 0.96214 0.97054 1.23641 0.95345 0.97008 0.96619 1.77185 1.23533 0.97159 1.14513 0.91819 0.91223 0.91076 0.90313 0.88984 0.81441 0.89767 0.89876 0.92123 0.90895 0.89921 0.92561 0.92269 0.92208 0.92753 0.91293 0.92872 0.89733 0.80783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 10.10 37.16 0.38 -1.45 16 2 C 0.14 1.48 7.23 -4.04 -0.03 1.45 16 3 N -0.38 -5.92 3.68 -61.36 -0.23 -6.15 16 4 C 0.06 1.01 11.36 -17.23 -0.20 0.81 16 5 C -0.20 -3.61 4.59 -105.05 -0.48 -4.10 16 6 C -0.06 -1.04 4.50 -29.04 -0.13 -1.17 16 7 C 0.44 10.35 5.93 -10.99 -0.07 10.28 16 8 O -0.54 -14.94 11.11 5.54 0.06 -14.88 16 9 N -0.46 -10.66 2.18 -106.53 -0.23 -10.90 16 10 C -0.34 -9.38 8.04 -14.93 -0.12 -9.50 16 11 H 0.09 2.64 7.09 -52.49 -0.37 2.27 16 12 C 0.09 2.75 4.77 -17.47 -0.08 2.67 16 13 N -0.87 -26.91 13.96 55.50 0.77 -26.14 16 14 Si 0.91 24.82 24.82 -169.99 -4.22 20.61 16 15 H -0.25 -7.34 6.15 56.52 0.35 -6.99 16 16 H -0.32 -8.61 7.11 56.52 0.40 -8.20 16 17 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 18 C 0.13 2.30 3.20 -66.81 -0.21 2.09 16 19 C -0.13 -2.12 6.43 -25.03 -0.16 -2.29 16 20 C -0.12 -1.65 6.91 -24.70 -0.17 -1.83 16 21 C -0.12 -1.77 6.83 -25.08 -0.17 -1.94 16 22 C -0.13 -2.25 6.25 -25.61 -0.16 -2.41 16 23 C 0.06 1.09 11.96 -17.36 -0.21 0.89 16 24 N -0.30 -5.46 12.42 30.62 0.38 -5.08 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.09 0.77 8.07 -51.93 -0.42 0.36 16 30 H 0.17 2.19 8.06 -52.48 -0.42 1.76 16 31 H 0.08 1.25 7.87 -51.92 -0.41 0.84 16 32 H 0.08 1.31 7.72 -51.93 -0.40 0.91 16 33 H 0.27 7.96 8.31 -40.82 -0.34 7.62 16 34 H 0.07 1.13 5.84 -51.93 -0.30 0.82 16 35 H 0.08 1.59 6.65 -51.93 -0.35 1.24 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.08 1.76 7.16 -51.93 -0.37 1.38 16 43 H 0.18 2.85 8.06 -52.49 -0.42 2.42 16 LS Contribution 342.88 15.07 5.17 5.17 Total: -1.00 -35.68 342.88 -6.99 -42.67 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.88 Total: 1.19 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -1.82 Total: -6.49 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.70 Total: -48.27 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: 0.06 Total: -14.88 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -4.22 Total: 20.61 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.68 -6.99 -42.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559579292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.212 kcal (2) G-P(sol) polarization free energy of solvation -35.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds