Wall clock time and date at job start Tue Mar 31 2020 06:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47232 * 2 1 4 4 C 1.34943 * 126.04301 * 125.01866 * 3 2 1 5 5 C 1.35312 * 107.74841 * 180.02562 * 4 3 2 6 6 C 1.50703 * 126.04280 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.46698 * 269.97132 * 6 5 4 8 8 O 1.21298 * 120.00462 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00154 * 179.97438 * 7 6 5 10 10 C 1.37098 * 120.00178 * 179.97438 * 9 7 6 11 11 H 1.08002 * 119.99484 * 141.31748 * 10 9 7 12 12 C 1.38945 * 120.00000 * 321.31765 * 10 9 7 13 13 N 1.31411 * 119.99663 * 157.42941 * 12 10 9 14 14 Si 1.86798 * 120.00156 * 337.43569 * 12 10 9 15 15 H 1.48506 * 109.47077 * 94.41177 * 14 12 10 16 16 H 1.48497 * 109.47096 * 214.40825 * 14 12 10 17 17 H 1.48499 * 109.47071 * 334.41314 * 14 12 10 18 18 C 1.46505 * 119.99502 * 359.97438 * 9 7 6 19 19 C 1.54267 * 110.03505 * 242.61428 * 18 9 7 20 20 C 1.54965 * 104.15934 * 217.14141 * 19 18 9 21 21 C 1.54885 * 102.77756 * 37.88608 * 20 19 18 22 22 C 1.53881 * 110.02783 * 125.39625 * 18 9 7 23 23 C 1.39870 * 107.92037 * 359.97438 * 5 4 3 24 24 N 1.30839 * 108.20077 * 0.02562 * 23 5 4 25 25 H 1.09003 * 109.47297 * 299.99813 * 1 2 3 26 26 H 1.08994 * 109.47094 * 60.00824 * 1 2 3 27 27 H 1.09000 * 109.46898 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47561 * 239.99705 * 2 1 3 29 29 H 1.09004 * 109.47192 * 119.99353 * 2 1 3 30 30 H 1.08004 * 126.12560 * 0.02562 * 4 3 2 31 31 H 1.09008 * 109.47019 * 29.96690 * 6 5 4 32 32 H 1.08995 * 109.47114 * 149.96930 * 6 5 4 33 33 H 0.97006 * 119.99886 * 179.97438 * 13 12 10 34 34 H 1.09004 * 110.01724 * 4.00964 * 18 9 7 35 35 H 1.09002 * 110.48273 * 335.78981 * 19 18 9 36 36 H 1.09000 * 110.48336 * 98.42257 * 19 18 9 37 37 H 1.08997 * 110.71627 * 279.57201 * 20 19 18 38 38 H 1.08994 * 110.91673 * 156.29487 * 20 19 18 39 39 H 1.09003 * 110.48602 * 203.40641 * 21 20 19 40 40 H 1.09004 * 110.60095 * 80.82121 * 21 20 19 41 41 H 1.08998 * 110.03015 * 238.56949 * 22 18 9 42 42 H 1.09000 * 110.03027 * 0.02562 * 22 18 9 43 43 H 1.07999 * 125.90196 * 180.26273 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8733 1.9211 0.8936 5 6 3.0714 3.2138 0.5461 6 6 3.9551 4.2000 1.2654 7 6 3.1528 4.9165 2.3208 8 8 1.9788 4.6527 2.4735 9 7 3.7398 5.8506 3.0951 10 6 3.0098 6.5029 4.0549 11 1 3.4570 6.7312 5.0112 12 6 1.6948 6.8702 3.7974 13 7 0.8632 7.0768 4.7938 14 14 1.1088 7.0701 2.0350 15 1 0.4852 5.8036 1.5741 16 1 0.1101 8.1669 1.9669 17 1 2.2652 7.3985 1.1632 18 6 5.1580 6.1688 2.9111 19 6 5.9471 5.8258 4.1915 20 6 7.0046 6.9535 4.2986 21 6 6.2222 8.2030 3.8238 22 6 5.3331 7.6796 2.6770 23 6 2.3118 3.4726 -0.5995 24 7 1.6800 2.3749 -0.9276 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5137 0.8901 30 1 3.3196 1.4125 1.7354 31 1 4.7832 3.6698 1.7361 32 1 4.3465 4.9249 0.5518 33 1 -0.0548 7.3336 4.6141 34 1 5.5588 5.6109 2.0647 35 1 5.2885 5.8370 5.0600 36 1 6.4322 4.8548 4.0920 37 1 7.8496 6.7534 3.6398 38 1 7.3400 7.0759 5.3284 39 1 6.9085 8.9661 3.4565 40 1 5.6080 8.6008 4.6316 41 1 5.8196 7.8548 1.7175 42 1 4.3629 8.1760 2.7007 43 1 2.2591 4.4147 -1.1250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000559579292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:52 Heat of formation + Delta-G solvation = 27.040217 kcal Electronic energy + Delta-G solvation = -24133.923381 eV Core-core repulsion = 20794.232724 eV Total energy + Delta-G solvation = -3339.690658 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.16280 -40.82120 -38.49530 -35.59489 -35.19845 -33.96768 -32.69052 -31.06770 -29.40948 -28.75089 -28.18137 -25.86504 -24.61609 -22.20383 -21.62058 -21.43707 -21.14351 -20.45573 -18.69617 -17.83404 -17.61315 -17.10024 -16.33761 -16.08245 -15.89534 -15.45525 -15.39092 -15.13129 -14.89923 -14.54333 -14.05905 -14.04242 -13.92156 -13.70347 -13.32012 -13.14952 -13.01354 -12.86410 -12.56154 -12.33943 -12.29326 -12.07438 -11.79202 -11.77149 -11.74454 -11.46738 -11.33464 -11.23926 -10.63256 -10.31510 -10.24225 -9.43952 -9.22057 -8.34275 -5.99378 0.99133 1.24215 1.35783 1.56313 1.69648 1.83589 2.11468 2.53744 2.90799 3.17946 3.58478 3.88816 3.97139 4.00551 4.06237 4.10287 4.15505 4.29286 4.34421 4.41947 4.49190 4.60008 4.72743 4.74379 4.75540 4.81011 4.82882 4.85975 4.98019 4.98658 5.17074 5.18837 5.22125 5.24796 5.34323 5.49601 5.59604 5.66395 5.72267 5.79943 5.99520 6.21828 6.75691 6.91746 7.06914 7.52282 8.07480 8.74325 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017188 B = 0.005486 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.659657 B = 5102.389437 C = 5976.994213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.124 3.876 3 N -0.376 5.376 4 C 0.067 3.933 5 C -0.231 4.231 6 C -0.045 4.045 7 C 0.438 3.562 8 O -0.586 6.586 9 N -0.472 5.472 10 C -0.318 4.318 11 H 0.066 0.934 12 C 0.043 3.957 13 N -0.917 5.917 14 Si 0.960 3.040 15 H -0.282 1.282 16 H -0.322 1.322 17 H -0.259 1.259 18 C 0.119 3.881 19 C -0.131 4.131 20 C -0.109 4.109 21 C -0.117 4.117 22 C -0.134 4.134 23 C 0.039 3.961 24 N -0.330 5.330 25 H 0.037 0.963 26 H 0.048 0.952 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.124 0.876 30 H 0.199 0.801 31 H 0.122 0.878 32 H 0.108 0.892 33 H 0.266 0.734 34 H 0.113 0.887 35 H 0.040 0.960 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.038 0.962 41 H 0.086 0.914 42 H 0.040 0.960 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.182 -10.458 -9.146 19.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.005 3.995 3 N -0.160 5.160 4 C -0.080 4.080 5 C -0.242 4.242 6 C -0.086 4.086 7 C 0.229 3.771 8 O -0.471 6.471 9 N -0.195 5.195 10 C -0.445 4.445 11 H 0.084 0.916 12 C -0.160 4.160 13 N -0.557 5.557 14 Si 0.792 3.208 15 H -0.210 1.210 16 H -0.253 1.253 17 H -0.184 1.184 18 C 0.016 3.984 19 C -0.169 4.169 20 C -0.147 4.147 21 C -0.155 4.155 22 C -0.172 4.172 23 C -0.146 4.146 24 N -0.152 5.152 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.124 0.876 28 H 0.119 0.881 29 H 0.142 0.858 30 H 0.216 0.784 31 H 0.140 0.860 32 H 0.126 0.874 33 H 0.075 0.925 34 H 0.131 0.869 35 H 0.059 0.941 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.057 0.943 41 H 0.104 0.896 42 H 0.059 0.941 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 11.605 -11.260 -9.830 18.924 hybrid contribution -0.823 1.059 0.427 1.407 sum 10.782 -10.202 -9.403 17.571 Atomic orbital electron populations 1.22028 0.94461 1.03943 1.01523 1.22035 0.95688 0.76025 1.05800 1.48911 1.35258 1.10917 1.20867 1.22690 0.94865 0.94736 0.95693 1.19729 1.08758 0.95204 1.00531 1.19910 0.96755 0.96662 0.95267 1.21495 0.88737 0.80999 0.85820 1.90507 1.18622 1.66570 1.71408 1.44056 1.09744 1.33315 1.32337 1.18455 0.94569 1.36720 0.94744 0.91590 1.25818 0.96330 0.93632 1.00232 1.69882 1.05078 1.47012 1.33683 0.85614 0.78047 0.74439 0.82691 1.20987 1.25291 1.18371 1.22205 0.80801 0.96406 0.99019 1.22691 0.97163 0.99845 0.97193 1.22420 0.97223 0.93353 1.01682 1.22259 0.97690 0.98346 0.97220 1.22456 0.99739 0.95348 0.99653 1.23903 0.95764 0.97509 0.97396 1.77115 1.24205 0.97919 1.15932 0.94410 0.93246 0.87567 0.88082 0.85820 0.78380 0.85971 0.87391 0.92544 0.86931 0.94111 0.89776 0.88774 0.91433 0.89863 0.94316 0.89551 0.94076 0.80251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 10.10 71.98 0.73 -2.61 16 2 C 0.12 2.36 7.23 86.38 0.62 2.99 16 3 N -0.38 -11.05 3.68 -348.06 -1.28 -12.33 16 4 C 0.07 1.97 11.36 83.54 0.95 2.92 16 5 C -0.23 -7.77 4.59 -20.14 -0.09 -7.87 16 6 C -0.05 -1.43 4.50 29.10 0.13 -1.30 16 7 C 0.44 19.89 5.93 87.65 0.52 20.41 16 8 O -0.59 -33.02 11.11 -3.08 -0.03 -33.05 16 9 N -0.47 -21.48 2.18 -609.34 -1.33 -22.81 16 10 C -0.32 -17.93 8.04 84.04 0.68 -17.25 16 11 H 0.07 4.00 7.09 -2.91 -0.02 3.98 16 12 C 0.04 2.61 4.77 84.93 0.41 3.02 16 13 N -0.92 -59.79 13.96 21.66 0.30 -59.49 16 14 Si 0.96 53.34 24.82 68.60 1.70 55.04 16 15 H -0.28 -17.03 6.15 99.48 0.61 -16.41 16 16 H -0.32 -17.86 7.11 99.48 0.71 -17.16 16 17 H -0.26 -13.11 7.11 99.48 0.71 -12.40 16 18 C 0.12 3.91 3.20 45.72 0.15 4.06 16 19 C -0.13 -3.87 6.43 31.70 0.20 -3.67 16 20 C -0.11 -2.55 6.91 31.91 0.22 -2.33 16 21 C -0.12 -3.25 6.83 31.67 0.22 -3.04 16 22 C -0.13 -4.29 6.25 31.32 0.20 -4.09 16 23 C 0.04 1.40 11.96 85.24 1.02 2.42 16 24 N -0.33 -11.66 12.42 -57.02 -0.71 -12.37 16 25 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.12 1.59 8.07 -2.39 -0.02 1.57 16 30 H 0.20 4.38 8.06 -2.91 -0.02 4.36 16 31 H 0.12 2.95 7.87 -2.38 -0.02 2.93 16 32 H 0.11 2.91 7.72 -2.39 -0.02 2.89 16 33 H 0.27 16.63 8.31 -92.70 -0.77 15.86 16 34 H 0.11 2.84 5.84 -2.39 -0.01 2.82 16 35 H 0.04 1.55 6.65 -2.39 -0.02 1.53 16 36 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.04 1.68 7.16 -2.39 -0.02 1.67 16 43 H 0.18 5.81 8.06 -2.91 -0.02 5.79 16 Total: -1.00 -84.05 342.88 5.49 -78.56 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.89 Total: 12.77 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 5.94 Total: -6.33 kcal Atomic # 7 Polarization: -103.98 SS G_CDS: -3.01 Total: -106.99 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -0.03 Total: -33.05 kcal Atomic # 14 Polarization: 53.34 SS G_CDS: 1.70 Total: 55.04 kcal Total: -84.05 5.49 -78.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559579292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.601 kcal (2) G-P(sol) polarization free energy of solvation -84.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds