Wall clock time and date at job start Tue Mar 31 2020 07:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 110.99850 * 2 1 4 4 C 1.46906 * 110.99630 * 123.95206 * 2 1 3 5 5 C 1.52989 * 109.47443 * 66.04764 * 4 2 1 6 6 C 1.52994 * 109.47436 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47358 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47021 * 179.97438 * 7 6 5 9 9 O 1.21276 * 120.00316 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99659 * 179.97438 * 8 7 6 11 11 C 1.39475 * 120.00058 * 184.87146 * 10 8 7 12 12 C 1.38589 * 119.58120 * 182.94614 * 11 10 8 13 13 C 1.40813 * 118.79406 * 179.70006 * 12 11 10 14 14 C 1.41550 * 120.99641 * 180.25456 * 13 12 11 15 15 H 1.07999 * 120.00002 * 154.03193 * 14 13 12 16 16 C 1.40029 * 119.99998 * 334.03763 * 14 13 12 17 17 N 1.30736 * 120.00307 * 163.02668 * 16 14 13 18 18 Si 1.86806 * 119.99947 * 343.02242 * 16 14 13 19 19 H 1.48496 * 109.47082 * 95.20761 * 18 16 14 20 20 H 1.48502 * 109.47287 * 215.21056 * 18 16 14 21 21 H 1.48504 * 109.46767 * 335.20605 * 18 16 14 22 22 C 1.41170 * 118.00675 * 0.28053 * 13 12 11 23 23 C 1.37586 * 119.01672 * 359.97438 * 22 13 12 24 24 N 1.32082 * 121.10984 * 0.02844 * 23 22 13 25 25 H 1.09006 * 109.46914 * 296.05109 * 1 2 3 26 26 H 1.08998 * 109.47441 * 56.04794 * 1 2 3 27 27 H 1.09004 * 109.47241 * 176.05328 * 1 2 3 28 28 H 1.09007 * 109.46730 * 183.95818 * 3 2 1 29 29 H 1.09004 * 109.47080 * 303.94971 * 3 2 1 30 30 H 1.08993 * 109.47605 * 63.95515 * 3 2 1 31 31 H 1.08993 * 109.47206 * 306.04026 * 4 2 1 32 32 H 1.09007 * 109.46695 * 186.04482 * 4 2 1 33 33 H 1.09004 * 109.47133 * 59.99389 * 5 4 2 34 34 H 1.08998 * 109.46988 * 299.99739 * 5 4 2 35 35 H 1.09004 * 109.47232 * 59.99727 * 6 5 4 36 36 H 1.08998 * 109.47045 * 299.99982 * 6 5 4 37 37 H 1.09004 * 109.46942 * 59.99831 * 7 6 5 38 38 H 1.08998 * 109.47257 * 300.00133 * 7 6 5 39 39 H 0.96997 * 120.00311 * 4.87422 * 10 8 7 40 40 H 1.07995 * 120.60528 * 359.97438 * 12 11 10 41 41 H 0.96999 * 120.00271 * 180.02562 * 17 16 14 42 42 H 1.08002 * 120.48938 * 179.97438 * 22 13 12 43 43 H 1.07999 * 119.44565 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6315 -2.2425 0.9705 6 6 2.1802 -3.0404 2.1550 7 6 1.8157 -4.5169 1.9882 8 6 2.3568 -5.3028 3.1546 9 8 2.9728 -4.7376 4.0332 10 7 2.1551 -6.6337 3.2220 11 6 2.5662 -7.3452 4.3490 12 6 2.4104 -8.7218 4.3835 13 6 2.8370 -9.4243 5.5269 14 6 2.7050 -10.8312 5.6096 15 1 3.3706 -11.3998 6.2421 16 6 1.7114 -11.4858 4.8712 17 7 1.7850 -12.7765 4.6767 18 14 0.2807 -10.5147 4.1643 19 1 0.5798 -10.1463 2.7572 20 1 -0.9502 -11.3443 4.2079 21 1 0.0753 -9.2817 4.9659 22 6 3.3998 -8.6833 6.5885 23 6 3.5086 -7.3173 6.4649 24 7 3.0961 -6.6958 5.3749 25 1 -0.3633 0.4514 0.9233 26 1 -0.3634 0.5739 -0.8524 27 1 -0.3634 -1.0253 -0.0707 28 1 3.0828 1.3432 -0.0709 29 1 1.5898 1.9163 -0.8525 30 1 1.7044 1.8724 0.9232 31 1 1.5611 -0.3872 2.0628 32 1 3.0797 -0.6611 1.1757 33 1 2.0658 -2.6213 0.0453 34 1 0.5472 -2.3474 0.9325 35 1 1.7462 -2.6617 3.0805 36 1 3.2645 -2.9355 2.1927 37 1 2.2494 -4.8959 1.0627 38 1 0.7314 -4.6215 1.9508 39 1 1.7241 -7.0968 2.4868 40 1 1.9738 -9.2469 3.5469 41 1 1.0969 -13.2298 4.1649 42 1 3.7399 -9.1813 7.4845 43 1 3.9385 -6.7436 7.2727 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564774799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:33 Heat of formation + Delta-G solvation = -7.147146 kcal Electronic energy + Delta-G solvation = -22259.529691 eV Core-core repulsion = 18918.356558 eV Total energy + Delta-G solvation = -3341.173133 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.83360 -38.28639 -37.85255 -34.67877 -34.20323 -33.79775 -31.33696 -30.16261 -28.63249 -27.91255 -26.05176 -25.33279 -22.60848 -22.40488 -21.14745 -20.83392 -19.68441 -17.74961 -17.08135 -16.24854 -16.02379 -15.67492 -15.44482 -15.37444 -15.02354 -14.55259 -14.27445 -14.06458 -13.71395 -13.16185 -13.07847 -12.95041 -12.73372 -12.57373 -12.44987 -12.10628 -12.02698 -11.67278 -11.39076 -11.31504 -11.11883 -10.98278 -10.85045 -10.71668 -10.61676 -10.01814 -9.87239 -9.53342 -9.35460 -8.69311 -8.26246 -7.87621 -7.25132 -7.10756 -4.76297 2.29311 2.61313 2.96446 3.06503 3.20562 3.33378 3.42540 3.68847 3.84798 4.54318 4.62199 4.77288 4.79932 4.85919 5.01935 5.10387 5.16061 5.28232 5.28458 5.37592 5.41529 5.48585 5.52850 5.58855 5.63595 5.68162 5.82005 5.85011 6.14477 6.27715 6.30775 6.37372 6.40045 6.56248 6.69171 6.70921 6.92328 7.12198 7.24829 7.56320 7.73431 8.02967 8.18100 8.40840 8.62331 8.70613 9.45641 9.90179 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028433 B = 0.002782 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.537039 B =10061.212471 C =10834.168461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.550 5.550 3 C 0.024 3.976 4 C 0.053 3.947 5 C -0.116 4.116 6 C -0.102 4.102 7 C -0.139 4.139 8 C 0.497 3.503 9 O -0.478 6.478 10 N -0.667 5.667 11 C 0.370 3.630 12 C -0.324 4.324 13 C 0.126 3.874 14 C -0.434 4.434 15 H 0.095 0.905 16 C 0.085 3.915 17 N -0.797 5.797 18 Si 0.919 3.081 19 H -0.271 1.271 20 H -0.291 1.291 21 H -0.244 1.244 22 C -0.274 4.274 23 C 0.128 3.872 24 N -0.558 5.558 25 H 0.025 0.975 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.024 0.976 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.407 0.593 40 H 0.106 0.894 41 H 0.288 0.712 42 H 0.109 0.891 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.386 17.925 -10.194 21.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.273 5.273 3 C -0.125 4.125 4 C -0.075 4.075 5 C -0.154 4.154 6 C -0.141 4.141 7 C -0.180 4.180 8 C 0.282 3.718 9 O -0.348 6.348 10 N -0.313 5.313 11 C 0.143 3.857 12 C -0.350 4.350 13 C 0.118 3.882 14 C -0.464 4.464 15 H 0.113 0.887 16 C -0.137 4.137 17 N -0.421 5.421 18 Si 0.746 3.254 19 H -0.197 1.197 20 H -0.219 1.219 21 H -0.167 1.167 22 C -0.298 4.298 23 C -0.024 4.024 24 N -0.278 5.278 25 H 0.043 0.957 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.242 0.758 40 H 0.124 0.876 41 H 0.099 0.901 42 H 0.127 0.873 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.763 18.847 -10.119 21.719 hybrid contribution -1.270 -0.740 0.000 1.470 sum -5.033 18.107 -10.119 21.344 Atomic orbital electron populations 1.22448 0.87502 1.02531 1.00318 1.62006 1.08036 1.13751 1.43552 1.22381 1.00857 0.88852 1.00381 1.22178 1.00368 0.93909 0.91010 1.21612 1.01062 0.93729 0.98958 1.21278 1.02157 0.92349 0.98269 1.21692 1.02470 0.96227 0.97566 1.20795 0.80780 0.82047 0.88144 1.90777 1.36643 1.68579 1.38757 1.43622 1.60135 1.08374 1.19133 1.18022 0.93544 0.87457 0.86713 1.21157 1.19825 0.92290 1.01680 1.17680 0.87938 0.93361 0.89243 1.19529 1.14279 0.90088 1.22491 0.88683 1.26234 0.99640 0.95070 0.92711 1.69637 1.32572 1.10359 1.29505 0.86206 0.78773 0.80634 0.79770 1.19742 1.21894 1.16720 1.21864 1.13228 0.94509 1.00179 1.21893 0.94942 0.91809 0.93707 1.67317 1.20222 1.38987 1.01224 0.95677 0.91580 0.90933 0.91298 0.91459 0.95706 0.94666 0.90589 0.91013 0.91932 0.91232 0.90995 0.89051 0.89170 0.75827 0.87614 0.90128 0.87252 0.85315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.32 60.07 0.56 0.71 16 2 N -0.55 -4.82 5.02 -251.26 -1.26 -6.08 16 3 C 0.02 0.17 9.57 60.06 0.57 0.75 16 4 C 0.05 0.48 4.96 -3.83 -0.02 0.46 16 5 C -0.12 -1.03 5.14 -26.74 -0.14 -1.17 16 6 C -0.10 -1.13 4.50 -26.73 -0.12 -1.25 16 7 C -0.14 -1.59 5.70 -27.88 -0.16 -1.75 16 8 C 0.50 8.63 7.78 -10.99 -0.09 8.55 16 9 O -0.48 -10.31 14.25 5.56 0.08 -10.23 16 10 N -0.67 -12.27 5.39 -11.49 -0.06 -12.33 16 11 C 0.37 8.54 7.41 -154.70 -1.15 7.39 16 12 C -0.32 -7.75 7.01 -38.48 -0.27 -8.02 16 13 C 0.13 3.19 5.23 -106.55 -0.56 2.63 16 14 C -0.43 -11.42 9.66 -37.65 -0.36 -11.78 16 15 H 0.10 2.60 8.06 -52.49 -0.42 2.17 16 16 C 0.08 2.13 5.45 -17.35 -0.09 2.04 16 17 N -0.80 -20.36 13.92 55.55 0.77 -19.59 16 18 Si 0.92 19.95 24.42 -169.99 -4.15 15.80 16 19 H -0.27 -5.50 6.70 56.52 0.38 -5.12 16 20 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.24 -5.55 6.66 56.52 0.38 -5.18 16 22 C -0.27 -6.44 9.90 -38.71 -0.38 -6.83 16 23 C 0.13 2.93 11.15 -17.68 -0.20 2.74 16 24 N -0.56 -13.61 7.87 -12.52 -0.10 -13.71 16 25 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 26 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 27 H 0.07 0.52 6.47 -51.93 -0.34 0.19 16 28 H 0.07 0.47 8.12 -51.92 -0.42 0.05 16 29 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 30 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.04 0.33 8.12 -51.93 -0.42 -0.09 16 32 H 0.08 0.68 8.06 -51.92 -0.42 0.26 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.52 6.55 -51.93 -0.34 0.18 16 35 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 36 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.41 5.99 8.69 -40.82 -0.35 5.63 16 40 H 0.11 2.41 4.23 -52.49 -0.22 2.19 16 41 H 0.29 6.61 8.29 -40.82 -0.34 6.27 16 42 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16 43 H 0.13 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 349.99 15.07 5.27 5.27 Total: -1.00 -31.37 349.99 -8.61 -39.98 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.76 Total: 6.41 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -2.40 Total: -5.53 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -0.65 Total: -51.71 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.08 Total: -10.23 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.15 Total: 15.80 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.37 -8.61 -39.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564774799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.833 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds