Wall clock time and date at job start Tue Mar 31 2020 07:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 110.99850 * 2 1 4 4 C 1.46906 * 110.99630 * 123.95206 * 2 1 3 5 5 C 1.52989 * 109.47443 * 66.04764 * 4 2 1 6 6 C 1.52994 * 109.47436 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47358 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47021 * 179.97438 * 7 6 5 9 9 O 1.21276 * 120.00316 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99659 * 179.97438 * 8 7 6 11 11 C 1.39475 * 120.00058 * 184.87146 * 10 8 7 12 12 C 1.38589 * 119.58120 * 182.94614 * 11 10 8 13 13 C 1.40813 * 118.79406 * 179.70006 * 12 11 10 14 14 C 1.41550 * 120.99641 * 180.25456 * 13 12 11 15 15 H 1.07999 * 120.00002 * 154.03193 * 14 13 12 16 16 C 1.40029 * 119.99998 * 334.03763 * 14 13 12 17 17 N 1.30736 * 120.00307 * 163.02668 * 16 14 13 18 18 Si 1.86806 * 119.99947 * 343.02242 * 16 14 13 19 19 H 1.48496 * 109.47082 * 95.20761 * 18 16 14 20 20 H 1.48502 * 109.47287 * 215.21056 * 18 16 14 21 21 H 1.48504 * 109.46767 * 335.20605 * 18 16 14 22 22 C 1.41170 * 118.00675 * 0.28053 * 13 12 11 23 23 C 1.37586 * 119.01672 * 359.97438 * 22 13 12 24 24 N 1.32082 * 121.10984 * 0.02844 * 23 22 13 25 25 H 1.09006 * 109.46914 * 296.05109 * 1 2 3 26 26 H 1.08998 * 109.47441 * 56.04794 * 1 2 3 27 27 H 1.09004 * 109.47241 * 176.05328 * 1 2 3 28 28 H 1.09007 * 109.46730 * 183.95818 * 3 2 1 29 29 H 1.09004 * 109.47080 * 303.94971 * 3 2 1 30 30 H 1.08993 * 109.47605 * 63.95515 * 3 2 1 31 31 H 1.08993 * 109.47206 * 306.04026 * 4 2 1 32 32 H 1.09007 * 109.46695 * 186.04482 * 4 2 1 33 33 H 1.09004 * 109.47133 * 59.99389 * 5 4 2 34 34 H 1.08998 * 109.46988 * 299.99739 * 5 4 2 35 35 H 1.09004 * 109.47232 * 59.99727 * 6 5 4 36 36 H 1.08998 * 109.47045 * 299.99982 * 6 5 4 37 37 H 1.09004 * 109.46942 * 59.99831 * 7 6 5 38 38 H 1.08998 * 109.47257 * 300.00133 * 7 6 5 39 39 H 0.96997 * 120.00311 * 4.87422 * 10 8 7 40 40 H 1.07995 * 120.60528 * 359.97438 * 12 11 10 41 41 H 0.96999 * 120.00271 * 180.02562 * 17 16 14 42 42 H 1.08002 * 120.48938 * 179.97438 * 22 13 12 43 43 H 1.07999 * 119.44565 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6315 -2.2425 0.9705 6 6 2.1802 -3.0404 2.1550 7 6 1.8157 -4.5169 1.9882 8 6 2.3568 -5.3028 3.1546 9 8 2.9728 -4.7376 4.0332 10 7 2.1551 -6.6337 3.2220 11 6 2.5662 -7.3452 4.3490 12 6 2.4104 -8.7218 4.3835 13 6 2.8370 -9.4243 5.5269 14 6 2.7050 -10.8312 5.6096 15 1 3.3706 -11.3998 6.2421 16 6 1.7114 -11.4858 4.8712 17 7 1.7850 -12.7765 4.6767 18 14 0.2807 -10.5147 4.1643 19 1 0.5798 -10.1463 2.7572 20 1 -0.9502 -11.3443 4.2079 21 1 0.0753 -9.2817 4.9659 22 6 3.3998 -8.6833 6.5885 23 6 3.5086 -7.3173 6.4649 24 7 3.0961 -6.6958 5.3749 25 1 -0.3633 0.4514 0.9233 26 1 -0.3634 0.5739 -0.8524 27 1 -0.3634 -1.0253 -0.0707 28 1 3.0828 1.3432 -0.0709 29 1 1.5898 1.9163 -0.8525 30 1 1.7044 1.8724 0.9232 31 1 1.5611 -0.3872 2.0628 32 1 3.0797 -0.6611 1.1757 33 1 2.0658 -2.6213 0.0453 34 1 0.5472 -2.3474 0.9325 35 1 1.7462 -2.6617 3.0805 36 1 3.2645 -2.9355 2.1927 37 1 2.2494 -4.8959 1.0627 38 1 0.7314 -4.6215 1.9508 39 1 1.7241 -7.0968 2.4868 40 1 1.9738 -9.2469 3.5469 41 1 1.0969 -13.2298 4.1649 42 1 3.7399 -9.1813 7.4845 43 1 3.9385 -6.7436 7.2727 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564774799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:32 Heat of formation + Delta-G solvation = -28.190775 kcal Electronic energy + Delta-G solvation = -22260.442211 eV Core-core repulsion = 18918.356558 eV Total energy + Delta-G solvation = -3342.085653 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.38451 -39.79278 -38.66547 -36.20893 -35.55393 -35.27199 -33.22870 -31.35246 -30.00311 -28.46895 -27.93767 -26.24324 -24.22712 -23.71674 -22.36822 -21.64080 -21.19147 -19.54775 -18.57795 -17.58810 -17.28880 -17.08976 -16.42041 -16.34142 -16.26363 -15.88133 -15.66569 -15.32466 -15.12886 -14.76824 -14.64335 -14.46128 -13.66062 -13.46538 -13.40985 -13.22720 -12.86466 -12.77644 -12.66786 -12.61252 -12.58477 -12.22162 -12.06024 -11.87907 -11.79075 -11.54102 -11.37981 -11.26501 -10.93813 -10.16808 -9.66690 -9.32243 -9.01348 -8.97306 -6.74504 0.54211 0.75754 1.22453 1.39053 1.48118 1.84964 2.08743 2.08855 2.66175 3.01961 3.53261 3.62554 3.87403 4.01107 4.09190 4.26108 4.31467 4.42419 4.47152 4.50719 4.55985 4.59339 4.68239 4.69280 4.74368 4.76135 4.77810 4.84207 4.94536 5.00211 5.02910 5.10482 5.12438 5.29270 5.35396 5.46369 5.53563 5.68434 6.02559 6.07877 6.10205 6.18740 6.49273 6.52918 6.66410 7.26285 7.70359 8.06229 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028433 B = 0.002782 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.537039 B =10061.212471 C =10834.168461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.561 5.561 3 C 0.022 3.978 4 C 0.053 3.947 5 C -0.104 4.104 6 C -0.097 4.097 7 C -0.125 4.125 8 C 0.493 3.507 9 O -0.525 6.525 10 N -0.660 5.660 11 C 0.366 3.634 12 C -0.332 4.332 13 C 0.110 3.890 14 C -0.466 4.466 15 H 0.065 0.935 16 C 0.050 3.950 17 N -0.829 5.829 18 Si 0.971 3.029 19 H -0.242 1.242 20 H -0.277 1.277 21 H -0.261 1.261 22 C -0.287 4.287 23 C 0.128 3.872 24 N -0.577 5.577 25 H 0.022 0.978 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.023 0.977 31 H 0.028 0.972 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.425 0.575 40 H 0.118 0.882 41 H 0.300 0.700 42 H 0.119 0.881 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.941 19.511 -12.479 23.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.285 5.285 3 C -0.126 4.126 4 C -0.075 4.075 5 C -0.141 4.141 6 C -0.136 4.136 7 C -0.165 4.165 8 C 0.281 3.719 9 O -0.397 6.397 10 N -0.308 5.308 11 C 0.137 3.863 12 C -0.357 4.357 13 C 0.102 3.898 14 C -0.496 4.496 15 H 0.084 0.916 16 C -0.168 4.168 17 N -0.454 5.454 18 Si 0.794 3.206 19 H -0.167 1.167 20 H -0.204 1.204 21 H -0.186 1.186 22 C -0.311 4.311 23 C -0.024 4.024 24 N -0.297 5.297 25 H 0.041 0.959 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.042 0.958 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.263 0.737 40 H 0.135 0.865 41 H 0.111 0.889 42 H 0.137 0.863 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.326 20.418 -12.452 24.501 hybrid contribution -0.705 -1.151 0.763 1.551 sum -6.032 19.266 -11.689 23.329 Atomic orbital electron populations 1.22498 0.86774 1.03000 1.00654 1.62034 1.08821 1.14433 1.43179 1.22428 1.01026 0.88348 1.00813 1.22148 1.00150 0.94238 0.90988 1.21490 1.01606 0.93098 0.97938 1.21210 1.01171 0.92619 0.98556 1.21740 1.04058 0.94985 0.95694 1.21904 0.79517 0.81506 0.88990 1.90758 1.38716 1.69269 1.40979 1.43720 1.59803 1.08953 1.18299 1.18312 0.92611 0.87700 0.87663 1.21259 1.20036 0.92841 1.01546 1.17901 0.88386 0.93178 0.90356 1.19516 1.15476 0.90783 1.23803 0.91634 1.26936 1.01273 0.95874 0.92732 1.69646 1.33865 1.11441 1.30407 0.85417 0.76228 0.78676 0.80239 1.16667 1.20353 1.18574 1.22055 1.13547 0.95034 1.00443 1.22359 0.94093 0.91765 0.94164 1.67461 1.20645 1.39624 1.01958 0.95905 0.90609 0.90506 0.91176 0.90390 0.95797 0.95400 0.91021 0.90343 0.90783 0.92948 0.92563 0.85968 0.86236 0.73657 0.86494 0.88928 0.86258 0.82437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.32 127.69 1.19 1.43 16 2 N -0.56 -8.70 5.02 -948.84 -4.76 -13.47 16 3 C 0.02 0.28 9.57 127.69 1.22 1.50 16 4 C 0.05 0.86 4.96 86.30 0.43 1.29 16 5 C -0.10 -1.55 5.14 30.59 0.16 -1.40 16 6 C -0.10 -1.94 4.50 30.59 0.14 -1.80 16 7 C -0.13 -2.40 5.70 29.85 0.17 -2.23 16 8 C 0.49 16.01 7.78 87.66 0.68 16.70 16 9 O -0.52 -22.17 14.25 -3.02 -0.04 -22.22 16 10 N -0.66 -22.65 5.39 -308.66 -1.66 -24.32 16 11 C 0.37 16.40 7.41 132.75 0.98 17.39 16 12 C -0.33 -15.53 7.01 22.98 0.16 -15.37 16 13 C 0.11 5.62 5.23 -21.11 -0.11 5.51 16 14 C -0.47 -25.24 9.66 23.52 0.23 -25.01 16 15 H 0.07 3.80 8.06 -2.91 -0.02 3.77 16 16 C 0.05 2.53 5.45 85.29 0.47 3.00 16 17 N -0.83 -42.69 13.92 21.84 0.30 -42.38 16 18 Si 0.97 39.84 24.42 68.60 1.68 41.52 16 19 H -0.24 -8.75 6.70 99.48 0.67 -8.08 16 20 H -0.28 -10.64 7.11 99.48 0.71 -9.93 16 21 H -0.26 -11.43 6.66 99.48 0.66 -10.77 16 22 C -0.29 -13.61 9.90 22.84 0.23 -13.38 16 23 C 0.13 5.78 11.15 84.50 0.94 6.73 16 24 N -0.58 -27.69 7.87 -193.54 -1.52 -29.21 16 25 H 0.02 0.30 8.14 -2.38 -0.02 0.28 16 26 H 0.08 0.80 8.12 -2.39 -0.02 0.78 16 27 H 0.08 0.89 6.47 -2.38 -0.02 0.88 16 28 H 0.07 0.87 8.12 -2.38 -0.02 0.85 16 29 H 0.08 0.82 8.12 -2.38 -0.02 0.80 16 30 H 0.02 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.03 0.49 8.12 -2.39 -0.02 0.47 16 32 H 0.07 1.21 8.06 -2.38 -0.02 1.19 16 33 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.07 0.97 6.55 -2.39 -0.02 0.95 16 35 H 0.05 1.23 8.10 -2.38 -0.02 1.21 16 36 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 37 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.43 11.01 8.69 -92.71 -0.81 10.20 16 40 H 0.12 5.10 4.23 -2.91 -0.01 5.09 16 41 H 0.30 13.66 8.29 -92.71 -0.77 12.89 16 42 H 0.12 5.25 8.06 -2.91 -0.02 5.23 16 43 H 0.16 6.01 8.06 -2.91 -0.02 5.98 16 Total: -1.00 -68.89 349.99 0.98 -67.91 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.11 Total: 27.81 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 6.88 Total: -5.65 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -7.64 Total: -109.37 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.04 Total: -22.22 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 1.68 Total: 41.52 kcal Total: -68.89 0.98 -67.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564774799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.716 kcal (2) G-P(sol) polarization free energy of solvation -68.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds