Wall clock time and date at job start Tue Mar 31 2020 07:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35463 * 117.00213 * 2 1 4 4 N 1.32334 * 119.18963 * 0.02898 * 3 2 1 5 5 C 1.32289 * 120.75377 * 179.97438 * 4 3 2 6 6 C 1.38616 * 119.17500 * 359.72050 * 5 4 3 7 7 C 1.38565 * 118.51985 * 0.51870 * 6 5 4 8 8 C 1.50703 * 120.41040 * 179.75517 * 7 6 5 9 9 N 1.46906 * 109.47109 * 94.72567 * 8 7 6 10 10 C 1.46846 * 110.99676 * 294.20858 * 9 8 7 11 11 C 1.53035 * 109.52070 * 174.15755 * 10 9 8 12 12 C 1.53129 * 109.27791 * 59.18212 * 11 10 9 13 13 C 1.52997 * 109.52186 * 182.43772 * 12 11 10 14 14 C 1.50698 * 109.47423 * 294.68170 * 13 12 11 15 15 H 1.08000 * 119.99744 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00284 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99698 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00213 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47497 * 59.99757 * 18 16 14 20 20 H 1.48506 * 109.47333 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47037 * 299.99291 * 18 16 14 22 22 C 1.53119 * 109.15676 * 302.34599 * 12 11 10 23 23 C 1.46844 * 111.00112 * 169.99735 * 9 8 7 24 24 N 1.32299 * 119.19750 * 180.02562 * 3 2 1 25 25 H 1.08996 * 109.47798 * 59.99349 * 1 2 3 26 26 H 1.09001 * 109.47016 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47313 * 299.99268 * 1 2 3 28 28 H 1.07999 * 120.40835 * 179.97438 * 5 4 3 29 29 H 1.08001 * 120.73956 * 180.29853 * 6 5 4 30 30 H 1.08992 * 109.46894 * 334.72303 * 8 7 6 31 31 H 1.09004 * 109.47113 * 214.72453 * 8 7 6 32 32 H 1.08992 * 109.46292 * 294.17523 * 10 9 8 33 33 H 1.09001 * 109.46243 * 54.14545 * 10 9 8 34 34 H 1.08997 * 109.51198 * 299.24261 * 11 10 9 35 35 H 1.09002 * 109.50588 * 179.11720 * 11 10 9 36 36 H 1.08999 * 109.57079 * 62.27951 * 12 11 10 37 37 H 1.08994 * 109.47224 * 54.68419 * 13 12 11 38 38 H 1.09005 * 109.46496 * 174.68046 * 13 12 11 39 39 H 0.97002 * 119.99959 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.50171 * 297.70833 * 22 12 11 41 41 H 1.09001 * 109.52926 * 177.61600 * 22 12 11 42 42 H 1.09001 * 109.46487 * 305.85957 * 23 9 8 43 43 H 1.09002 * 109.45983 * 65.82980 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0439 1.2070 0.0000 4 7 1.3076 2.3065 0.0006 5 6 1.8758 3.5012 0.0011 6 6 3.2590 3.5915 0.0069 7 6 3.9986 2.4198 0.0010 8 6 5.5049 2.4683 0.0015 9 7 5.9978 2.3630 1.3813 10 6 5.6049 3.5367 2.1715 11 6 6.0070 3.3272 3.6331 12 6 7.5215 3.1168 3.7156 13 6 7.9218 2.8463 5.1673 14 6 7.6512 4.0728 5.9999 15 1 7.2349 4.9568 5.5398 16 6 7.9350 4.0666 7.3491 17 7 8.4415 2.9900 7.9095 18 14 7.5989 5.5867 8.3813 19 1 6.1524 5.9165 8.3206 20 1 7.9887 5.3246 9.7901 21 1 8.3894 6.7279 7.8538 22 6 7.9104 1.9183 2.8456 23 6 7.4531 2.1686 1.4069 24 7 3.3660 1.2576 -0.0005 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 1.2695 4.3949 0.0012 29 1 3.7494 4.5538 0.0124 30 1 5.8380 3.4110 -0.4324 31 1 5.8953 1.6389 -0.5882 32 1 6.1059 4.4221 1.7803 33 1 4.5252 3.6726 2.1077 34 1 5.4957 2.4498 4.0291 35 1 5.7293 4.2051 4.2165 36 1 8.0342 4.0091 3.3566 37 1 7.3411 2.0090 5.5543 38 1 8.9835 2.6036 5.2121 39 1 8.6408 2.9854 8.8588 40 1 7.4290 1.0187 3.2292 41 1 8.9925 1.7889 2.8663 42 1 7.7159 1.3109 0.7877 43 1 7.9455 3.0605 1.0194 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564915962.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:36 Heat of formation + Delta-G solvation = 9.263528 kcal Electronic energy + Delta-G solvation = -23089.704678 eV Core-core repulsion = 19749.243165 eV Total energy + Delta-G solvation = -3340.461513 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.42588 -39.03512 -38.25805 -35.11366 -33.73335 -32.44134 -31.51128 -30.34171 -28.61672 -27.72961 -26.24706 -24.25423 -23.63494 -22.75087 -22.01890 -20.63334 -18.94915 -18.57312 -17.97019 -16.61584 -16.24317 -15.97463 -15.72393 -15.13744 -14.78549 -14.48889 -14.41165 -14.08694 -14.01235 -13.47982 -13.25293 -12.79613 -12.43832 -12.20321 -12.06516 -11.89918 -11.61448 -11.52892 -11.28951 -11.11088 -10.92383 -10.72181 -10.65790 -10.58599 -10.25937 -9.96553 -9.53985 -9.34543 -9.18172 -9.02359 -8.86881 -8.30837 -8.16451 -5.95543 -3.97182 0.80037 0.89428 2.38990 3.34309 3.39176 3.40897 3.50870 3.82589 4.08114 4.30716 4.44205 4.48486 4.86162 4.93091 4.98481 5.02419 5.13447 5.29400 5.31774 5.33831 5.39609 5.49248 5.54101 5.61485 5.71764 5.86448 5.90851 5.94234 6.11819 6.23251 6.43071 6.56849 6.60434 6.66906 6.97653 6.98979 7.09087 7.20569 7.25293 7.32384 7.72311 7.89548 7.94749 8.05359 8.47983 9.09241 9.66064 11.15789 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019588 B = 0.003288 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.134758 B = 8513.038557 C = 8974.117379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.290 6.290 3 C 0.499 3.501 4 N -0.573 5.573 5 C 0.185 3.815 6 C -0.263 4.263 7 C 0.233 3.767 8 C 0.100 3.900 9 N -0.527 5.527 10 C 0.051 3.949 11 C -0.099 4.099 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.515 4.515 15 H 0.054 0.946 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.889 3.111 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.112 4.112 23 C 0.062 3.938 24 N -0.506 5.506 25 H 0.061 0.939 26 H 0.102 0.898 27 H 0.063 0.937 28 H 0.172 0.828 29 H 0.149 0.851 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.031 0.969 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.016 0.984 38 H 0.014 0.986 39 H 0.260 0.740 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.272 -0.321 -19.531 23.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.191 6.191 3 C 0.196 3.804 4 N -0.303 5.303 5 C 0.021 3.979 6 C -0.286 4.286 7 C 0.085 3.915 8 C -0.029 4.029 9 N -0.253 5.253 10 C -0.076 4.076 11 C -0.137 4.137 12 C -0.100 4.100 13 C -0.009 4.009 14 C -0.554 4.554 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.204 1.204 22 C -0.150 4.150 23 C -0.065 4.065 24 N -0.231 5.231 25 H 0.079 0.921 26 H 0.121 0.879 27 H 0.081 0.919 28 H 0.189 0.811 29 H 0.167 0.833 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.035 0.965 38 H 0.033 0.967 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -12.840 -2.040 -19.144 23.141 hybrid contribution 0.275 2.468 0.386 2.514 sum -12.565 0.428 -18.758 22.581 Atomic orbital electron populations 1.22973 0.75828 1.03480 1.02731 1.86100 1.23214 1.22764 1.87021 1.20716 0.86119 0.84726 0.88826 1.68037 1.41542 0.99336 1.21422 1.22903 0.92460 0.94356 0.88230 1.22643 0.96181 1.00937 1.08845 1.21395 0.96768 0.86542 0.86797 1.21008 0.87347 1.02237 0.92282 1.61869 1.13739 1.40856 1.08786 1.22327 0.99536 0.89945 0.95832 1.21538 0.97168 1.02537 0.92414 1.21238 0.94466 0.95810 0.98453 1.19107 0.96429 0.96859 0.88478 1.21214 1.41678 0.99199 0.93259 0.92794 1.25018 0.95443 0.95914 0.98110 1.69958 1.44150 1.27815 1.11619 0.86718 0.78648 0.83577 0.79392 1.20315 1.21364 1.20352 1.21699 1.00028 1.00292 0.92990 1.22124 0.85581 0.99748 0.99024 1.67382 1.07288 1.30160 1.18275 0.92059 0.87927 0.91874 0.81102 0.83298 0.92440 0.88468 0.95048 0.91811 0.91949 0.90855 0.92965 0.96527 0.96729 0.93036 0.91475 0.91889 0.91206 0.95059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.39 10.36 101.05 1.05 1.44 16 2 O -0.29 -3.83 10.55 -18.08 -0.19 -4.02 16 3 C 0.50 7.05 8.49 -91.25 -0.77 6.28 16 4 N -0.57 -7.00 9.23 -14.73 -0.14 -7.13 16 5 C 0.19 1.81 11.30 -17.22 -0.19 1.61 16 6 C -0.26 -2.66 8.34 -39.32 -0.33 -2.98 16 7 C 0.23 2.94 5.67 -82.26 -0.47 2.48 16 8 C 0.10 1.17 5.33 -4.97 -0.03 1.14 16 9 N -0.53 -7.66 4.65 -236.12 -1.10 -8.76 16 10 C 0.05 0.77 5.22 -3.84 -0.02 0.75 16 11 C -0.10 -1.87 5.15 -26.65 -0.14 -2.00 16 12 C -0.08 -1.64 2.20 -90.49 -0.20 -1.84 16 13 C 0.03 0.73 4.45 -27.89 -0.12 0.60 16 14 C -0.52 -14.37 8.45 -34.44 -0.29 -14.66 16 15 H 0.05 1.45 7.08 -52.49 -0.37 1.08 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 18 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C -0.11 -1.94 5.38 -26.65 -0.14 -2.08 16 23 C 0.06 0.88 5.46 -3.84 -0.02 0.86 16 24 N -0.51 -7.59 10.40 -10.95 -0.11 -7.71 16 25 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 26 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 28 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.06 0.55 8.05 -51.93 -0.42 0.13 16 31 H 0.10 1.09 7.99 -51.93 -0.41 0.67 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.91 6.05 -51.93 -0.31 0.60 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.07 1.46 7.05 -51.93 -0.37 1.10 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.07 0.88 8.02 -51.93 -0.42 0.46 16 43 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 348.34 15.07 5.25 5.25 Total: -1.00 -33.02 348.34 -9.28 -42.30 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -6.93 Total: -3.30 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -1.78 Total: -6.90 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -0.61 Total: -49.97 kcal Atomic # 8 Polarization: -3.83 SS G_CDS: -0.19 Total: -4.02 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.02 -9.28 -42.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564915962.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.564 kcal (2) G-P(sol) polarization free energy of solvation -33.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds