Wall clock time and date at job start Tue Mar 31 2020 07:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35463 * 117.00213 * 2 1 4 4 N 1.32334 * 119.18963 * 0.02898 * 3 2 1 5 5 C 1.32289 * 120.75377 * 179.97438 * 4 3 2 6 6 C 1.38616 * 119.17500 * 359.72050 * 5 4 3 7 7 C 1.38565 * 118.51985 * 0.51870 * 6 5 4 8 8 C 1.50703 * 120.41040 * 179.75517 * 7 6 5 9 9 N 1.46906 * 109.47109 * 94.72567 * 8 7 6 10 10 C 1.46846 * 110.99676 * 294.20858 * 9 8 7 11 11 C 1.53035 * 109.52070 * 174.15755 * 10 9 8 12 12 C 1.53129 * 109.27791 * 59.18212 * 11 10 9 13 13 C 1.52997 * 109.52186 * 182.43772 * 12 11 10 14 14 C 1.50698 * 109.47423 * 294.68170 * 13 12 11 15 15 H 1.08000 * 119.99744 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00284 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99698 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00213 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47497 * 59.99757 * 18 16 14 20 20 H 1.48506 * 109.47333 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47037 * 299.99291 * 18 16 14 22 22 C 1.53119 * 109.15676 * 302.34599 * 12 11 10 23 23 C 1.46844 * 111.00112 * 169.99735 * 9 8 7 24 24 N 1.32299 * 119.19750 * 180.02562 * 3 2 1 25 25 H 1.08996 * 109.47798 * 59.99349 * 1 2 3 26 26 H 1.09001 * 109.47016 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47313 * 299.99268 * 1 2 3 28 28 H 1.07999 * 120.40835 * 179.97438 * 5 4 3 29 29 H 1.08001 * 120.73956 * 180.29853 * 6 5 4 30 30 H 1.08992 * 109.46894 * 334.72303 * 8 7 6 31 31 H 1.09004 * 109.47113 * 214.72453 * 8 7 6 32 32 H 1.08992 * 109.46292 * 294.17523 * 10 9 8 33 33 H 1.09001 * 109.46243 * 54.14545 * 10 9 8 34 34 H 1.08997 * 109.51198 * 299.24261 * 11 10 9 35 35 H 1.09002 * 109.50588 * 179.11720 * 11 10 9 36 36 H 1.08999 * 109.57079 * 62.27951 * 12 11 10 37 37 H 1.08994 * 109.47224 * 54.68419 * 13 12 11 38 38 H 1.09005 * 109.46496 * 174.68046 * 13 12 11 39 39 H 0.97002 * 119.99959 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.50171 * 297.70833 * 22 12 11 41 41 H 1.09001 * 109.52926 * 177.61600 * 22 12 11 42 42 H 1.09001 * 109.46487 * 305.85957 * 23 9 8 43 43 H 1.09002 * 109.45983 * 65.82980 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0439 1.2070 0.0000 4 7 1.3076 2.3065 0.0006 5 6 1.8758 3.5012 0.0011 6 6 3.2590 3.5915 0.0069 7 6 3.9986 2.4198 0.0010 8 6 5.5049 2.4683 0.0015 9 7 5.9978 2.3630 1.3813 10 6 5.6049 3.5367 2.1715 11 6 6.0070 3.3272 3.6331 12 6 7.5215 3.1168 3.7156 13 6 7.9218 2.8463 5.1673 14 6 7.6512 4.0728 5.9999 15 1 7.2349 4.9568 5.5398 16 6 7.9350 4.0666 7.3491 17 7 8.4415 2.9900 7.9095 18 14 7.5989 5.5867 8.3813 19 1 6.1524 5.9165 8.3206 20 1 7.9887 5.3246 9.7901 21 1 8.3894 6.7279 7.8538 22 6 7.9104 1.9183 2.8456 23 6 7.4531 2.1686 1.4069 24 7 3.3660 1.2576 -0.0005 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 1.2695 4.3949 0.0012 29 1 3.7494 4.5538 0.0124 30 1 5.8380 3.4110 -0.4324 31 1 5.8953 1.6389 -0.5882 32 1 6.1059 4.4221 1.7803 33 1 4.5252 3.6726 2.1077 34 1 5.4957 2.4498 4.0291 35 1 5.7293 4.2051 4.2165 36 1 8.0342 4.0091 3.3566 37 1 7.3411 2.0090 5.5543 38 1 8.9835 2.6036 5.2121 39 1 8.6408 2.9854 8.8588 40 1 7.4290 1.0187 3.2292 41 1 8.9925 1.7889 2.8663 42 1 7.7159 1.3109 0.7877 43 1 7.9455 3.0605 1.0194 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564915962.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:36 Heat of formation + Delta-G solvation = -15.475553 kcal Electronic energy + Delta-G solvation = -23090.777445 eV Core-core repulsion = 19749.243165 eV Total energy + Delta-G solvation = -3341.534280 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.28377 -40.17657 -39.24504 -36.48919 -35.01015 -34.10138 -32.61295 -31.62762 -30.13412 -28.50089 -27.62277 -25.49827 -24.94358 -23.99045 -23.17059 -22.10570 -20.44110 -19.45286 -18.84121 -18.41827 -17.50038 -16.92975 -16.69845 -16.46446 -16.07669 -15.66002 -15.47176 -15.16669 -14.98027 -14.80691 -14.68524 -14.13946 -14.05702 -13.43323 -13.29198 -13.09867 -12.90887 -12.84098 -12.62197 -12.33583 -12.31464 -12.21283 -12.08822 -12.00959 -11.74381 -11.63757 -11.25396 -10.90368 -10.69836 -10.51271 -10.21467 -9.99203 -9.21336 -8.16260 -6.26300 -0.06645 0.08958 1.39856 1.42990 1.50502 1.59843 2.42449 2.60343 3.03214 3.13116 3.17080 3.44231 3.65856 4.00320 4.03766 4.09548 4.14214 4.27278 4.36712 4.37879 4.39586 4.46500 4.54626 4.65434 4.67754 4.71160 4.78739 4.79470 4.85732 4.96114 5.09164 5.16415 5.17710 5.39292 5.42589 5.45489 5.58447 5.75311 5.81843 5.90287 6.14242 6.16075 6.18855 6.30764 6.90326 7.07847 7.42190 8.95676 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019588 B = 0.003288 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.134758 B = 8513.038557 C = 8974.117379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.315 6.315 3 C 0.477 3.523 4 N -0.579 5.579 5 C 0.183 3.817 6 C -0.253 4.253 7 C 0.212 3.788 8 C 0.104 3.896 9 N -0.549 5.549 10 C 0.065 3.935 11 C -0.094 4.094 12 C -0.073 4.073 13 C 0.033 3.967 14 C -0.529 4.529 15 H 0.064 0.936 16 C -0.005 4.005 17 N -0.938 5.938 18 Si 0.962 3.038 19 H -0.267 1.267 20 H -0.287 1.287 21 H -0.265 1.265 22 C -0.109 4.109 23 C 0.071 3.929 24 N -0.543 5.543 25 H 0.067 0.933 26 H 0.127 0.873 27 H 0.060 0.940 28 H 0.213 0.787 29 H 0.181 0.819 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.034 0.966 35 H 0.059 0.941 36 H 0.058 0.942 37 H -0.019 1.019 38 H -0.014 1.014 39 H 0.261 0.739 40 H 0.045 0.955 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.200 2.224 -21.318 25.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.216 6.216 3 C 0.175 3.825 4 N -0.310 5.310 5 C 0.019 3.981 6 C -0.276 4.276 7 C 0.065 3.935 8 C -0.023 4.023 9 N -0.275 5.275 10 C -0.063 4.063 11 C -0.132 4.132 12 C -0.091 4.091 13 C -0.004 4.004 14 C -0.567 4.567 15 H 0.082 0.918 16 C -0.202 4.202 17 N -0.579 5.579 18 Si 0.786 3.214 19 H -0.192 1.192 20 H -0.212 1.212 21 H -0.189 1.189 22 C -0.147 4.147 23 C -0.056 4.056 24 N -0.270 5.270 25 H 0.086 0.914 26 H 0.145 0.855 27 H 0.079 0.921 28 H 0.229 0.771 29 H 0.199 0.801 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.076 0.924 37 H -0.001 1.001 38 H 0.005 0.995 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.084 0.916 42 H 0.107 0.893 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.772 0.514 -20.956 25.081 hybrid contribution 0.536 1.636 0.953 1.967 sum -13.236 2.149 -20.003 24.082 Atomic orbital electron populations 1.23208 0.73897 1.05224 1.02863 1.86059 1.25263 1.23189 1.87135 1.20927 0.86287 0.85445 0.89860 1.68113 1.41539 0.99752 1.21556 1.23675 0.93124 0.94715 0.86589 1.22987 0.96297 1.01321 1.06980 1.21693 0.97322 0.86895 0.87571 1.21062 0.86890 1.04006 0.90387 1.61725 1.13909 1.40943 1.10910 1.22116 1.00281 0.90981 0.92888 1.21405 0.95683 1.00551 0.95561 1.21079 0.95604 0.97271 0.95173 1.19009 0.94025 0.95110 0.92262 1.21643 1.41191 0.99978 0.93893 0.91813 1.25999 0.95172 0.99301 0.99706 1.70115 1.45466 1.30289 1.11987 0.85552 0.79033 0.79517 0.77272 1.19188 1.21237 1.18936 1.21612 1.00175 0.97898 0.94989 1.22018 0.85675 1.01469 0.96395 1.67311 1.08129 1.31909 1.19664 0.91395 0.85452 0.92148 0.77088 0.80139 0.89248 0.88243 0.92949 0.90843 0.94731 0.92259 0.92392 1.00101 0.99537 0.93007 0.93623 0.91552 0.89295 0.93147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 10.36 113.37 1.17 1.89 16 2 O -0.31 -8.40 10.55 -87.61 -0.92 -9.32 16 3 C 0.48 13.34 8.49 180.57 1.53 14.88 16 4 N -0.58 -13.28 9.23 -313.45 -2.89 -16.17 16 5 C 0.18 3.01 11.30 84.71 0.96 3.97 16 6 C -0.25 -4.24 8.34 22.44 0.19 -4.05 16 7 C 0.21 4.89 5.67 42.56 0.24 5.13 16 8 C 0.10 2.13 5.33 85.56 0.46 2.58 16 9 N -0.55 -14.76 4.65 -900.95 -4.19 -18.94 16 10 C 0.06 1.80 5.22 86.33 0.45 2.25 16 11 C -0.09 -3.55 5.15 30.65 0.16 -3.40 16 12 C -0.07 -2.97 2.20 -10.71 -0.02 -2.99 16 13 C 0.03 1.77 4.45 29.85 0.13 1.91 16 14 C -0.53 -30.05 8.45 25.60 0.22 -29.83 16 15 H 0.06 3.42 7.08 -2.91 -0.02 3.40 16 16 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 17 N -0.94 -58.45 13.29 21.45 0.28 -58.16 16 18 Si 0.96 44.57 29.54 68.60 2.03 46.59 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 20 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 21 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 22 C -0.11 -3.76 5.38 30.64 0.16 -3.60 16 23 C 0.07 1.86 5.46 86.32 0.47 2.33 16 24 N -0.54 -16.03 10.40 -301.51 -3.14 -19.17 16 25 H 0.07 1.00 8.09 -2.39 -0.02 0.99 16 26 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 1.01 8.09 -2.38 -0.02 0.99 16 28 H 0.21 1.56 8.06 -2.91 -0.02 1.54 16 29 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 30 H 0.09 1.28 8.05 -2.39 -0.02 1.26 16 31 H 0.10 1.98 7.99 -2.38 -0.02 1.96 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 1.90 6.05 -2.39 -0.01 1.89 16 34 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 2.36 7.05 -2.39 -0.02 2.34 16 36 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 37 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 38 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 39 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 40 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.09 2.00 8.02 -2.39 -0.02 1.98 16 43 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -75.11 348.34 -1.27 -76.38 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 0.98 Total: 7.55 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 6.58 Total: -8.76 kcal Atomic # 7 Polarization: -102.51 SS G_CDS: -9.93 Total: -112.44 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.92 Total: -9.32 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -75.11 -1.27 -76.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564915962.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.903 kcal (2) G-P(sol) polarization free energy of solvation -75.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds