Wall clock time and date at job start Tue Mar 31 2020 07:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47036 * 2 1 4 4 C 1.35759 * 116.99925 * 179.97438 * 3 2 1 5 5 N 1.32257 * 120.11591 * 359.97438 * 4 3 2 6 6 C 1.32417 * 120.01909 * 179.97438 * 5 4 3 7 7 C 1.37956 * 120.25710 * 0.02562 * 6 5 4 8 8 N 1.32395 * 120.23764 * 0.02562 * 7 6 5 9 9 C 1.32461 * 119.97325 * 359.68209 * 8 7 6 10 10 N 1.39180 * 120.12954 * 180.29685 * 9 8 7 11 11 C 1.46848 * 111.00277 * 236.07806 * 10 9 8 12 12 C 1.53039 * 109.52289 * 185.83809 * 11 10 9 13 13 C 1.53124 * 109.28061 * 300.82547 * 12 11 10 14 14 C 1.52999 * 109.52245 * 177.56104 * 13 12 11 15 15 C 1.50697 * 109.47164 * 65.31375 * 14 13 12 16 16 H 1.08003 * 120.00399 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99778 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00162 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99727 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47369 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47313 * 120.00400 * 19 17 15 22 22 H 1.48502 * 109.47024 * 240.00210 * 19 17 15 23 23 C 1.53118 * 109.15927 * 57.65315 * 13 12 11 24 24 C 1.46848 * 110.99988 * 0.29583 * 10 9 8 25 25 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46801 * 300.00369 * 1 2 3 27 27 H 1.09001 * 109.46998 * 59.99965 * 1 2 3 28 28 H 1.09001 * 109.47002 * 119.99477 * 2 1 3 29 29 H 1.08993 * 109.46955 * 239.99914 * 2 1 3 30 30 H 1.07999 * 119.87346 * 179.97438 * 6 5 4 31 31 H 1.08001 * 119.88142 * 179.97438 * 7 6 5 32 32 H 1.08996 * 109.46332 * 305.85767 * 11 10 9 33 33 H 1.08998 * 109.45716 * 65.82892 * 11 10 9 34 34 H 1.08998 * 109.50171 * 180.88829 * 12 11 10 35 35 H 1.08995 * 109.50086 * 60.76818 * 12 11 10 36 36 H 1.09004 * 109.51888 * 297.74842 * 13 12 11 37 37 H 1.08999 * 109.46835 * 185.31466 * 14 13 12 38 38 H 1.08995 * 109.46985 * 305.31819 * 14 13 12 39 39 H 0.97003 * 119.99780 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.50129 * 182.40666 * 23 13 12 41 41 H 1.09001 * 109.50381 * 62.28754 * 23 13 12 42 42 H 1.09000 * 109.45973 * 294.17140 * 24 10 9 43 43 H 1.08998 * 109.46497 * 54.13888 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3522 1.5251 0.0005 5 7 4.1600 0.4779 0.0015 6 6 5.4725 0.6536 0.0016 7 6 6.0033 1.9269 0.0011 8 7 5.2042 2.9825 0.0011 9 6 3.8899 2.8174 -0.0048 10 7 3.0467 3.9248 -0.0110 11 6 2.1138 3.8824 1.1222 12 6 1.1113 5.0325 1.0027 13 6 1.8681 6.3636 0.9899 14 6 0.8758 7.5141 0.8094 15 6 -0.0294 7.5900 2.0119 16 1 0.0912 6.8882 2.8239 17 6 -1.0109 8.5562 2.0759 18 7 -1.1575 9.4112 1.0875 19 14 -2.1325 8.6508 3.5667 20 1 -1.7637 7.5843 4.5321 21 1 -1.9828 9.9782 4.2154 22 1 -3.5422 8.4654 3.1382 23 6 2.8670 6.3625 -0.1705 24 6 3.8187 5.1740 -0.0170 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 6.1299 -0.2032 0.0028 31 1 7.0747 2.0632 0.0015 32 1 1.5792 2.9325 1.1172 33 1 2.6701 3.9810 2.0544 34 1 0.4289 5.0101 1.8523 35 1 0.5450 4.9268 0.0774 36 1 2.4034 6.4873 1.9313 37 1 1.4218 8.4518 0.7058 38 1 0.2777 7.3411 -0.0852 39 1 -1.8483 10.0907 1.1324 40 1 3.4389 7.2904 -0.1592 41 1 2.3284 6.2779 -1.1144 42 1 4.3670 5.2665 0.9205 43 1 4.5223 5.1621 -0.8494 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566160474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:32 Heat of formation + Delta-G solvation = 6.691183 kcal Electronic energy + Delta-G solvation = -23676.730226 eV Core-core repulsion = 20336.157168 eV Total energy + Delta-G solvation = -3340.573058 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.54457 -38.75545 -38.49764 -35.06721 -33.56615 -32.48187 -31.61293 -30.48260 -29.79045 -27.56785 -25.29656 -24.29489 -23.26389 -22.49619 -22.39228 -20.77435 -19.00686 -18.62959 -17.80495 -17.34224 -16.52113 -16.19627 -15.28703 -14.94518 -14.69193 -14.51398 -14.22928 -13.93365 -13.50002 -13.35496 -12.95923 -12.76272 -12.70445 -12.52761 -12.13300 -11.88605 -11.56332 -11.42855 -11.35226 -11.14962 -10.95913 -10.83276 -10.67562 -10.64861 -10.28383 -9.97728 -9.63146 -9.44946 -9.29196 -9.04244 -8.85403 -8.31437 -7.86782 -5.96133 -3.97538 0.79292 1.04496 2.74636 3.32509 3.40337 3.42906 3.43704 3.70377 4.01757 4.25008 4.48639 4.60146 4.86152 4.88453 5.02422 5.13857 5.20710 5.35198 5.38469 5.41471 5.48642 5.54478 5.69190 5.70169 5.82189 5.85954 5.95687 6.04718 6.13354 6.27304 6.39311 6.44582 6.64208 6.81597 6.91302 7.05636 7.09901 7.18659 7.19106 7.36472 7.72381 7.74441 7.88200 8.04645 8.47470 9.09218 9.66013 11.15224 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019519 B = 0.003940 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.156377 B = 7104.809645 C = 8124.465680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.285 6.285 4 C 0.266 3.734 5 N -0.482 5.482 6 C 0.041 3.959 7 C 0.035 3.965 8 N -0.453 5.453 9 C 0.273 3.727 10 N -0.456 5.456 11 C 0.054 3.946 12 C -0.098 4.098 13 C -0.084 4.084 14 C 0.028 3.972 15 C -0.514 4.514 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.116 4.116 24 C 0.069 3.931 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.168 0.832 31 H 0.169 0.831 32 H 0.092 0.908 33 H 0.038 0.962 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.015 0.985 38 H 0.017 0.983 39 H 0.259 0.741 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.046 0.954 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.079 -19.143 -2.661 22.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.191 6.191 4 C 0.077 3.923 5 N -0.212 5.212 6 C -0.116 4.116 7 C -0.123 4.123 8 N -0.174 5.174 9 C 0.033 3.967 10 N -0.174 5.174 11 C -0.071 4.071 12 C -0.136 4.136 13 C -0.103 4.103 14 C -0.009 4.009 15 C -0.552 4.552 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.716 3.284 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.154 4.154 24 C -0.057 4.057 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.185 0.815 31 H 0.186 0.814 32 H 0.110 0.890 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.034 0.966 38 H 0.036 0.964 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.419 -18.781 -3.123 21.704 hybrid contribution -0.052 -0.145 1.291 1.300 sum 10.367 -18.927 -1.832 21.658 Atomic orbital electron populations 1.21822 0.92656 1.02748 1.03897 1.22660 0.95176 0.81363 1.02112 1.86448 1.15374 1.30003 1.87231 1.20308 0.85407 0.89512 0.97063 1.67995 1.05778 1.32168 1.15270 1.23157 0.90260 0.98371 0.99779 1.23353 1.00894 0.88675 0.99369 1.68520 1.02040 1.33799 1.13026 1.20217 0.88909 0.89785 0.97747 1.59046 1.16013 1.00829 1.41510 1.22535 0.93975 1.02277 0.88301 1.21581 0.96524 0.92231 1.03237 1.21297 0.96300 0.96552 0.96149 1.19114 0.92891 0.91798 0.97076 1.21289 1.15365 1.14537 1.04039 0.92639 1.25012 0.97591 0.95813 0.96040 1.69975 1.33637 1.18378 1.31531 0.86608 0.80753 0.77834 0.83229 1.19801 1.21138 1.21089 1.21784 0.97290 0.95701 1.00577 1.22086 0.95005 0.87066 1.01582 0.90452 0.91335 0.91314 0.91857 0.91808 0.81518 0.81395 0.89023 0.94364 0.90160 0.91412 0.92772 0.96633 0.96414 0.93157 0.91432 0.91483 0.93540 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 37.16 0.38 -0.98 16 2 C 0.06 0.66 6.05 37.16 0.22 0.89 16 3 O -0.29 -3.96 7.39 -18.99 -0.14 -4.10 16 4 C 0.27 3.82 7.23 -16.72 -0.12 3.70 16 5 N -0.48 -6.12 9.39 -12.96 -0.12 -6.24 16 6 C 0.04 0.41 11.20 -17.40 -0.19 0.21 16 7 C 0.03 0.36 11.20 -17.41 -0.20 0.17 16 8 N -0.45 -6.34 8.87 -12.10 -0.11 -6.45 16 9 C 0.27 4.18 6.42 -154.48 -0.99 3.19 16 10 N -0.46 -7.45 4.61 -172.89 -0.80 -8.24 16 11 C 0.05 0.88 5.15 -3.83 -0.02 0.86 16 12 C -0.10 -1.84 5.15 -26.65 -0.14 -1.98 16 13 C -0.08 -1.72 2.20 -90.50 -0.20 -1.92 16 14 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 15 C -0.51 -14.22 8.44 -34.44 -0.29 -14.51 16 16 H 0.06 1.49 7.08 -52.48 -0.37 1.12 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 19 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 C -0.12 -2.04 5.38 -26.65 -0.14 -2.19 16 24 C 0.07 1.10 4.66 -3.83 -0.02 1.09 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.64 8.11 -51.93 -0.42 0.22 16 29 H 0.06 0.65 8.11 -51.93 -0.42 0.23 16 30 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 32 H 0.09 1.43 5.40 -51.93 -0.28 1.15 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.58 7.05 -51.93 -0.37 1.21 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 43 H 0.08 1.20 7.73 -51.93 -0.40 0.79 16 LS Contribution 345.14 15.07 5.20 5.20 Total: -1.00 -31.51 345.14 -9.07 -40.58 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -6.89 Total: -1.79 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -1.93 Total: -9.37 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: -0.29 Total: -47.06 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -0.14 Total: -4.10 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.51 -9.07 -40.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566160474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.272 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds