Wall clock time and date at job start Tue Mar 31 2020 07:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47036 * 2 1 4 4 C 1.35759 * 116.99925 * 179.97438 * 3 2 1 5 5 N 1.32257 * 120.11591 * 359.97438 * 4 3 2 6 6 C 1.32417 * 120.01909 * 179.97438 * 5 4 3 7 7 C 1.37956 * 120.25710 * 0.02562 * 6 5 4 8 8 N 1.32395 * 120.23764 * 0.02562 * 7 6 5 9 9 C 1.32461 * 119.97325 * 359.68209 * 8 7 6 10 10 N 1.39180 * 120.12954 * 180.29685 * 9 8 7 11 11 C 1.46848 * 111.00277 * 236.07806 * 10 9 8 12 12 C 1.53039 * 109.52289 * 185.83809 * 11 10 9 13 13 C 1.53124 * 109.28061 * 300.82547 * 12 11 10 14 14 C 1.52999 * 109.52245 * 177.56104 * 13 12 11 15 15 C 1.50697 * 109.47164 * 65.31375 * 14 13 12 16 16 H 1.08003 * 120.00399 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99778 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00162 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99727 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47369 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47313 * 120.00400 * 19 17 15 22 22 H 1.48502 * 109.47024 * 240.00210 * 19 17 15 23 23 C 1.53118 * 109.15927 * 57.65315 * 13 12 11 24 24 C 1.46848 * 110.99988 * 0.29583 * 10 9 8 25 25 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46801 * 300.00369 * 1 2 3 27 27 H 1.09001 * 109.46998 * 59.99965 * 1 2 3 28 28 H 1.09001 * 109.47002 * 119.99477 * 2 1 3 29 29 H 1.08993 * 109.46955 * 239.99914 * 2 1 3 30 30 H 1.07999 * 119.87346 * 179.97438 * 6 5 4 31 31 H 1.08001 * 119.88142 * 179.97438 * 7 6 5 32 32 H 1.08996 * 109.46332 * 305.85767 * 11 10 9 33 33 H 1.08998 * 109.45716 * 65.82892 * 11 10 9 34 34 H 1.08998 * 109.50171 * 180.88829 * 12 11 10 35 35 H 1.08995 * 109.50086 * 60.76818 * 12 11 10 36 36 H 1.09004 * 109.51888 * 297.74842 * 13 12 11 37 37 H 1.08999 * 109.46835 * 185.31466 * 14 13 12 38 38 H 1.08995 * 109.46985 * 305.31819 * 14 13 12 39 39 H 0.97003 * 119.99780 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.50129 * 182.40666 * 23 13 12 41 41 H 1.09001 * 109.50381 * 62.28754 * 23 13 12 42 42 H 1.09000 * 109.45973 * 294.17140 * 24 10 9 43 43 H 1.08998 * 109.46497 * 54.13888 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3522 1.5251 0.0005 5 7 4.1600 0.4779 0.0015 6 6 5.4725 0.6536 0.0016 7 6 6.0033 1.9269 0.0011 8 7 5.2042 2.9825 0.0011 9 6 3.8899 2.8174 -0.0048 10 7 3.0467 3.9248 -0.0110 11 6 2.1138 3.8824 1.1222 12 6 1.1113 5.0325 1.0027 13 6 1.8681 6.3636 0.9899 14 6 0.8758 7.5141 0.8094 15 6 -0.0294 7.5900 2.0119 16 1 0.0912 6.8882 2.8239 17 6 -1.0109 8.5562 2.0759 18 7 -1.1575 9.4112 1.0875 19 14 -2.1325 8.6508 3.5667 20 1 -1.7637 7.5843 4.5321 21 1 -1.9828 9.9782 4.2154 22 1 -3.5422 8.4654 3.1382 23 6 2.8670 6.3625 -0.1705 24 6 3.8187 5.1740 -0.0170 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 6.1299 -0.2032 0.0028 31 1 7.0747 2.0632 0.0015 32 1 1.5792 2.9325 1.1172 33 1 2.6701 3.9810 2.0544 34 1 0.4289 5.0101 1.8523 35 1 0.5450 4.9268 0.0774 36 1 2.4034 6.4873 1.9313 37 1 1.4218 8.4518 0.7058 38 1 0.2777 7.3411 -0.0852 39 1 -1.8483 10.0907 1.1324 40 1 3.4389 7.2904 -0.1592 41 1 2.3284 6.2779 -1.1144 42 1 4.3670 5.2665 0.9205 43 1 4.5223 5.1621 -0.8494 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566160474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:31 Heat of formation + Delta-G solvation = -13.905321 kcal Electronic energy + Delta-G solvation = -23677.623357 eV Core-core repulsion = 20336.157168 eV Total energy + Delta-G solvation = -3341.466189 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.52221 -40.03306 -39.45899 -36.55841 -34.84498 -34.12912 -32.63854 -31.86388 -30.95335 -29.21124 -26.54126 -25.68752 -24.45489 -23.71473 -23.51703 -22.34018 -20.57263 -19.54345 -18.83007 -18.50043 -18.28509 -17.44886 -16.54951 -16.22432 -15.90302 -15.69376 -15.45296 -15.10008 -15.05556 -14.62769 -14.40653 -14.07784 -13.70360 -13.61329 -13.41199 -13.31884 -13.08588 -12.75533 -12.61726 -12.59167 -12.37307 -12.27467 -12.20736 -12.03938 -11.76429 -11.66654 -11.32860 -10.92993 -10.77320 -10.51288 -10.50990 -10.25547 -8.91220 -8.15447 -6.24732 -0.12924 0.10732 1.40724 1.41246 1.53930 1.84816 2.39531 2.43343 2.73745 3.14001 3.18044 3.39861 3.58005 3.95984 3.99588 4.02065 4.08810 4.13090 4.27302 4.32219 4.37598 4.42837 4.44982 4.64124 4.67646 4.77771 4.81350 4.92562 4.95724 4.96542 5.08236 5.18143 5.25839 5.34097 5.36289 5.41719 5.57092 5.69324 5.77781 5.87888 5.91994 6.20354 6.30627 6.35164 6.79629 6.91370 7.43607 8.96737 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019519 B = 0.003940 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.156377 B = 7104.809645 C = 8124.465680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.305 6.305 4 C 0.250 3.750 5 N -0.490 5.490 6 C 0.058 3.942 7 C 0.037 3.963 8 N -0.468 5.468 9 C 0.241 3.759 10 N -0.469 5.469 11 C 0.068 3.932 12 C -0.090 4.090 13 C -0.076 4.076 14 C 0.035 3.965 15 C -0.528 4.528 16 H 0.061 0.939 17 C -0.001 4.001 18 N -0.935 5.935 19 Si 0.959 3.041 20 H -0.261 1.261 21 H -0.281 1.281 22 H -0.280 1.280 23 C -0.109 4.109 24 C 0.083 3.917 25 H 0.103 0.897 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.213 0.787 31 H 0.209 0.791 32 H 0.099 0.901 33 H 0.037 0.963 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.052 0.948 37 H -0.011 1.011 38 H -0.010 1.010 39 H 0.261 0.739 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.045 0.955 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.616 -21.570 -1.798 25.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 O -0.211 6.211 4 C 0.064 3.936 5 N -0.220 5.220 6 C -0.100 4.100 7 C -0.121 4.121 8 N -0.189 5.189 9 C 0.003 3.997 10 N -0.188 5.188 11 C -0.057 4.057 12 C -0.127 4.127 13 C -0.095 4.095 14 C -0.002 4.002 15 C -0.566 4.566 16 H 0.079 0.921 17 C -0.198 4.198 18 N -0.576 5.576 19 Si 0.784 3.216 20 H -0.185 1.185 21 H -0.207 1.207 22 H -0.206 1.206 23 C -0.146 4.146 24 C -0.043 4.043 25 H 0.121 0.879 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.230 0.770 31 H 0.226 0.774 32 H 0.117 0.883 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.007 0.993 38 H 0.008 0.992 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.938 -21.220 -2.261 24.452 hybrid contribution -0.364 0.488 0.981 1.155 sum 11.574 -20.731 -1.280 23.778 Atomic orbital electron populations 1.21843 0.91558 1.04182 1.03124 1.22829 0.96004 0.80215 1.02382 1.86403 1.15580 1.31746 1.87353 1.20328 0.85771 0.89618 0.97915 1.68100 1.06923 1.31590 1.15379 1.23990 0.89736 0.99865 0.96385 1.24091 1.02377 0.88087 0.97590 1.68480 1.01827 1.35668 1.12918 1.20122 0.89431 0.89557 1.00551 1.59018 1.16724 1.01291 1.41722 1.22288 0.93564 1.01120 0.88718 1.21412 0.96802 0.92528 1.01996 1.21131 0.95787 0.95388 0.97175 1.18990 0.93236 0.92615 0.95388 1.21675 1.15708 1.14525 1.04668 0.92052 1.25931 0.99323 0.95424 0.99163 1.70113 1.34576 1.19188 1.33744 0.85481 0.78464 0.78149 0.79468 1.18504 1.20653 1.20565 1.21673 0.97005 0.97195 0.98772 1.21886 0.94304 0.86359 1.01797 0.87894 0.91981 0.92151 0.91399 0.91562 0.77043 0.77404 0.88305 0.94461 0.91333 0.92700 0.92984 0.99287 0.99169 0.92986 0.90950 0.92407 0.93653 0.89555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 10.28 71.98 0.74 -1.78 16 2 C 0.06 1.23 6.05 71.98 0.44 1.66 16 3 O -0.30 -8.36 7.39 -90.85 -0.67 -9.03 16 4 C 0.25 6.90 7.23 85.05 0.61 7.52 16 5 N -0.49 -11.20 9.39 -307.75 -2.89 -14.09 16 6 C 0.06 0.92 11.20 84.54 0.95 1.87 16 7 C 0.04 0.64 11.20 84.54 0.95 1.59 16 8 N -0.47 -12.13 8.87 -192.18 -1.71 -13.84 16 9 C 0.24 7.12 6.42 133.19 0.85 7.97 16 10 N -0.47 -15.29 4.61 -700.89 -3.23 -18.52 16 11 C 0.07 2.26 5.15 86.33 0.44 2.70 16 12 C -0.09 -3.47 5.15 30.65 0.16 -3.31 16 13 C -0.08 -3.21 2.20 -10.71 -0.02 -3.23 16 14 C 0.03 1.85 4.45 29.85 0.13 1.99 16 15 C -0.53 -29.93 8.44 25.60 0.22 -29.71 16 16 H 0.06 3.34 7.08 -2.91 -0.02 3.31 16 17 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 18 N -0.94 -57.62 13.29 21.45 0.28 -57.34 16 19 Si 0.96 44.64 29.54 68.60 2.03 46.66 16 20 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 C -0.11 -3.93 5.38 30.65 0.16 -3.77 16 24 C 0.08 2.64 4.66 86.32 0.40 3.05 16 25 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.29 8.11 -2.39 -0.02 1.27 16 29 H 0.07 1.28 8.11 -2.39 -0.02 1.26 16 30 H 0.21 1.35 8.06 -2.91 -0.02 1.33 16 31 H 0.21 1.75 8.06 -2.91 -0.02 1.72 16 32 H 0.10 3.13 5.40 -2.39 -0.01 3.11 16 33 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 2.77 7.05 -2.39 -0.02 2.75 16 35 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 37 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 38 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 39 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 40 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.05 1.44 8.12 -2.39 -0.02 1.42 16 43 H 0.09 2.60 7.73 -2.39 -0.02 2.58 16 Total: -1.00 -70.03 345.14 1.29 -68.74 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 0.98 Total: 10.48 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 6.50 Total: -13.07 kcal Atomic # 7 Polarization: -96.25 SS G_CDS: -7.54 Total: -103.79 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -0.67 Total: -9.03 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -70.03 1.29 -68.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566160474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.831 kcal (2) G-P(sol) polarization free energy of solvation -70.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds