Wall clock time and date at job start Tue Mar 31 2020 07:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46905 * 110.99995 * 2 1 4 4 C 1.52997 * 109.47053 * 66.04702 * 3 2 1 5 5 C 1.53001 * 109.47019 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47143 * 179.97438 * 5 4 3 7 7 C 1.46506 * 119.99551 * 89.99938 * 6 5 4 8 8 C 1.34769 * 120.00084 * 270.00161 * 6 5 4 9 9 O 1.21690 * 119.99789 * 359.97438 * 8 6 5 10 10 C 1.46372 * 120.00215 * 180.02562 * 8 6 5 11 11 H 1.08005 * 119.99680 * 359.97438 * 10 8 6 12 12 C 1.40047 * 120.00239 * 179.97438 * 10 8 6 13 13 N 1.30671 * 119.99847 * 0.02562 * 12 10 8 14 14 Si 1.86796 * 119.99813 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47284 * 90.00467 * 14 12 10 16 16 H 1.48502 * 109.47290 * 210.00083 * 14 12 10 17 17 H 1.48497 * 109.47571 * 330.00372 * 14 12 10 18 18 C 1.46897 * 110.99814 * 236.04544 * 2 1 3 19 19 C 1.50694 * 109.47330 * 293.95439 * 18 2 1 20 20 C 1.38650 * 120.79254 * 269.72309 * 19 18 2 21 21 C 1.38199 * 119.16483 * 179.79774 * 20 19 18 22 22 N 1.31870 * 120.76334 * 0.48607 * 21 20 19 23 23 C 1.31870 * 121.72595 * 359.73965 * 22 21 20 24 24 C 1.38199 * 120.76274 * 0.02562 * 23 22 21 25 25 H 1.08992 * 109.47459 * 183.95199 * 1 2 3 26 26 H 1.09004 * 109.47040 * 303.95350 * 1 2 3 27 27 H 1.09000 * 109.47033 * 63.95302 * 1 2 3 28 28 H 1.09002 * 109.46783 * 186.04686 * 3 2 1 29 29 H 1.09005 * 109.46676 * 306.04728 * 3 2 1 30 30 H 1.09002 * 109.47313 * 299.99660 * 4 3 2 31 31 H 1.08994 * 109.47205 * 59.99990 * 4 3 2 32 32 H 1.09002 * 109.46818 * 299.99985 * 5 4 3 33 33 H 1.08994 * 109.47122 * 59.99961 * 5 4 3 34 34 H 1.08997 * 109.47111 * 90.00035 * 7 6 5 35 35 H 1.09004 * 109.46400 * 209.99967 * 7 6 5 36 36 H 1.08997 * 109.47223 * 330.00138 * 7 6 5 37 37 H 0.97004 * 119.99351 * 179.97438 * 13 12 10 38 38 H 1.09009 * 109.47296 * 53.95365 * 18 2 1 39 39 H 1.09002 * 109.47055 * 173.95064 * 18 2 1 40 40 H 1.07998 * 120.41383 * 359.97438 * 20 19 18 41 41 H 1.08001 * 119.61705 * 180.20050 * 21 20 19 42 42 H 1.07999 * 119.61455 * 180.02562 * 23 22 21 43 43 H 1.08005 * 120.41374 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1804 3.4856 1.3185 6 7 1.8314 4.1427 2.5806 7 6 2.7389 4.0553 3.7273 8 6 0.6755 4.8275 2.6866 9 8 -0.0781 4.9004 1.7339 10 6 0.3270 5.4845 3.9473 11 1 0.9960 5.4201 4.7927 12 6 -0.8739 6.1966 4.0573 13 7 -1.6836 6.2740 3.0346 14 14 -1.3189 7.0343 5.6665 15 1 -0.7857 8.4204 5.6670 16 1 -2.7962 7.0723 5.8129 17 1 -0.7285 6.2766 6.7990 18 6 1.9954 -0.7660 -1.1376 19 6 1.6369 -2.2204 -0.9729 20 6 2.4869 -3.0899 -0.3066 21 6 2.1227 -4.4161 -0.1714 22 7 0.9873 -4.8586 -0.6753 23 6 0.1569 -4.0615 -1.3188 24 6 0.4519 -2.7221 -1.4889 25 1 -0.3634 -1.0251 0.0708 26 1 -0.3633 0.5740 0.8525 27 1 -0.3633 0.4513 -0.9233 28 1 3.0798 1.3444 -0.1083 29 1 1.5611 1.9274 -0.8310 30 1 0.5473 2.0845 1.4265 31 1 2.0659 1.5016 2.1491 32 1 3.2647 3.4581 1.2105 33 1 1.7465 4.0418 0.4876 34 1 3.4416 4.8881 3.6989 35 1 2.1620 4.0979 4.6512 36 1 3.2883 3.1148 3.6850 37 1 -2.5155 6.7670 3.1110 38 1 1.5611 -0.3872 -2.0629 39 1 3.0797 -0.6611 -1.1757 40 1 3.4205 -2.7345 0.1039 41 1 2.7778 -5.0991 0.3491 42 1 -0.7643 -4.4600 -1.7174 43 1 -0.2321 -2.0744 -2.0173 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566345346.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:55 Heat of formation + Delta-G solvation = 4.708810 kcal Electronic energy + Delta-G solvation = -22566.596634 eV Core-core repulsion = 19225.937614 eV Total energy + Delta-G solvation = -3340.659020 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.41700 -38.14902 -37.37382 -34.37675 -33.22272 -32.43540 -31.43190 -31.02600 -27.71169 -27.10488 -25.91325 -24.93404 -23.60617 -23.10523 -21.51112 -20.60836 -19.04855 -16.82234 -16.62225 -16.47606 -15.88647 -15.81426 -15.64733 -15.14452 -14.66734 -14.27588 -13.99713 -13.89824 -13.87146 -13.54027 -13.45241 -12.58869 -12.38489 -12.16948 -11.85727 -11.63501 -11.56735 -11.46868 -11.40434 -11.26701 -11.10935 -10.93413 -10.84857 -10.32216 -10.14342 -9.99742 -9.82136 -9.66966 -9.32763 -8.85699 -8.39162 -7.58720 -7.19702 -6.19652 -4.64610 0.94721 1.03376 3.13066 3.20136 3.23210 3.53646 3.99174 4.10397 4.26731 4.43135 4.53035 4.56770 4.64839 4.89216 4.94021 5.10301 5.19678 5.23810 5.39241 5.47136 5.55943 5.57824 5.64703 5.73820 5.77157 5.81456 5.83142 5.97988 6.05974 6.09340 6.15026 6.26144 6.44867 6.50316 6.56083 6.60632 6.82016 7.00058 7.04617 7.44347 7.65073 7.77554 8.15090 8.36622 9.02191 9.43488 10.57707 10.76687 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026397 B = 0.002708 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.486830 B =10336.893791 C =10623.675771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.535 5.535 3 C 0.060 3.940 4 C -0.127 4.127 5 C 0.130 3.870 6 N -0.649 5.649 7 C 0.103 3.897 8 C 0.556 3.444 9 O -0.578 6.578 10 C -0.544 4.544 11 H 0.072 0.928 12 C 0.087 3.913 13 N -0.768 5.768 14 Si 0.906 3.094 15 H -0.272 1.272 16 H -0.279 1.279 17 H -0.265 1.265 18 C 0.088 3.912 19 C -0.028 4.028 20 C -0.153 4.153 21 C 0.095 3.905 22 N -0.490 5.490 23 C 0.095 3.905 24 C -0.167 4.167 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.027 0.973 28 H 0.071 0.929 29 H 0.036 0.964 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.030 0.970 35 H 0.070 0.930 36 H 0.040 0.960 37 H 0.268 0.732 38 H 0.046 0.954 39 H 0.086 0.914 40 H 0.135 0.865 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.157 -15.663 -6.804 18.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.259 5.259 3 C -0.068 4.068 4 C -0.167 4.167 5 C 0.005 3.995 6 N -0.387 5.387 7 C -0.041 4.041 8 C 0.362 3.638 9 O -0.461 6.461 10 C -0.580 4.580 11 H 0.090 0.910 12 C -0.133 4.133 13 N -0.397 5.397 14 Si 0.731 3.269 15 H -0.197 1.197 16 H -0.205 1.205 17 H -0.189 1.189 18 C -0.039 4.039 19 C -0.037 4.037 20 C -0.173 4.173 21 C -0.062 4.062 22 N -0.199 5.199 23 C -0.061 4.061 24 C -0.188 4.188 25 H 0.084 0.916 26 H 0.098 0.902 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.153 0.847 41 H 0.172 0.828 42 H 0.171 0.829 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.507 -16.632 -6.875 19.500 hybrid contribution -0.233 1.695 0.061 1.712 sum 7.274 -14.937 -6.814 17.957 Atomic orbital electron populations 1.22534 0.87022 1.01992 1.01537 1.62023 1.08498 1.14342 1.41020 1.22125 0.99464 0.86807 0.98401 1.21995 1.02577 0.96275 0.95834 1.20898 0.97336 0.91709 0.89532 1.47962 1.23092 1.56876 1.10798 1.21373 0.93379 0.98393 0.91000 1.18243 0.78368 0.77760 0.89436 1.90585 1.50042 1.64629 1.40828 1.21021 1.05564 1.34087 0.97353 0.91006 1.25739 0.95604 0.94902 0.97018 1.70025 1.08385 1.31633 1.29644 0.86401 0.77993 0.79966 0.82583 1.19741 1.20471 1.18879 1.21097 1.00870 0.89063 0.92887 1.20211 0.93596 0.95687 0.94191 1.22042 1.01218 0.94445 0.99592 1.22759 0.93327 0.93935 0.96136 1.67658 1.03942 1.39216 1.09115 1.22714 0.98242 0.90172 0.94988 1.22103 0.97591 0.97164 1.01909 0.91635 0.90241 0.95449 0.91013 0.94526 0.91243 0.91884 0.93144 0.91230 0.95175 0.91097 0.94090 0.92164 0.93537 0.89522 0.84681 0.82839 0.82904 0.85055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 8.98 60.07 0.54 0.76 16 2 N -0.53 -6.77 4.75 -244.36 -1.16 -7.93 16 3 C 0.06 0.81 4.96 -3.82 -0.02 0.79 16 4 C -0.13 -2.16 5.47 -26.73 -0.15 -2.31 16 5 C 0.13 2.48 5.41 -4.04 -0.02 2.46 16 6 N -0.65 -14.74 2.87 -183.24 -0.53 -15.27 16 7 C 0.10 1.91 10.15 59.85 0.61 2.52 16 8 C 0.56 15.79 7.61 -12.99 -0.10 15.69 16 9 O -0.58 -18.51 14.60 5.20 0.08 -18.43 16 10 C -0.54 -15.26 8.74 -35.63 -0.31 -15.57 16 11 H 0.07 1.84 6.00 -52.48 -0.31 1.53 16 12 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 13 N -0.77 -22.95 11.83 55.55 0.66 -22.30 16 14 Si 0.91 20.07 29.56 -169.99 -5.02 15.04 16 15 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 16 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.26 -5.66 7.11 56.52 0.40 -5.25 16 18 C 0.09 0.90 5.16 -4.98 -0.03 0.87 16 19 C -0.03 -0.29 4.90 -104.32 -0.51 -0.80 16 20 C -0.15 -1.46 9.82 -39.44 -0.39 -1.84 16 21 C 0.10 0.93 11.18 -17.55 -0.20 0.73 16 22 N -0.49 -5.53 10.36 -13.26 -0.14 -5.67 16 23 C 0.10 0.94 11.18 -17.55 -0.20 0.74 16 24 C -0.17 -1.61 8.13 -39.44 -0.32 -1.93 16 25 H 0.06 0.80 6.18 -51.93 -0.32 0.48 16 26 H 0.08 1.21 6.30 -51.93 -0.33 0.89 16 27 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.83 7.93 -51.93 -0.41 0.42 16 29 H 0.04 0.51 8.12 -51.93 -0.42 0.09 16 30 H 0.07 1.41 6.47 -51.93 -0.34 1.08 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.07 1.48 7.42 -51.93 -0.39 1.09 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 1.37 6.09 -51.93 -0.32 1.05 16 36 H 0.04 0.63 8.07 -51.93 -0.42 0.21 16 37 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 38 H 0.05 0.45 8.08 -51.92 -0.42 0.03 16 39 H 0.09 0.77 7.89 -51.93 -0.41 0.36 16 40 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 41 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 42 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 43 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 354.06 15.07 5.34 5.34 Total: -1.00 -34.79 354.06 -8.56 -43.35 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.60 Total: 1.43 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -1.18 Total: 4.44 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -1.17 Total: -51.17 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.08 Total: -18.43 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.79 -8.56 -43.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566345346.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.060 kcal (2) G-P(sol) polarization free energy of solvation -34.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds