Wall clock time and date at job start Tue Mar 31 2020 06:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47595 * 2 1 4 4 C 1.34752 * 120.15517 * 270.00530 * 3 2 1 5 5 N 1.30443 * 121.47819 * 180.20107 * 4 3 2 6 6 C 1.34077 * 121.82220 * 0.02562 * 5 4 3 7 7 C 1.35618 * 119.46085 * 359.70323 * 6 5 4 8 8 C 1.34939 * 120.15839 * 89.99593 * 3 2 1 9 9 O 1.21985 * 120.63430 * 0.15333 * 8 3 2 10 10 C 1.50470 * 122.20179 * 180.58571 * 7 6 5 11 11 C 1.52951 * 109.96563 * 343.23335 * 10 7 6 12 12 N 1.47188 * 108.42983 * 49.80708 * 11 10 7 13 13 C 1.46898 * 111.00140 * 52.91382 * 12 11 10 14 14 H 1.09001 * 109.46873 * 315.80203 * 13 12 11 15 15 C 1.52998 * 109.46996 * 195.79951 * 13 12 11 16 16 C 1.53000 * 109.46822 * 75.79696 * 13 12 11 17 17 C 1.50698 * 109.47193 * 289.25951 * 16 13 12 18 18 H 1.07994 * 120.00143 * 353.99446 * 17 16 13 19 19 C 1.37881 * 119.99838 * 173.99518 * 17 16 13 20 20 N 1.31511 * 119.99664 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99875 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47142 * 90.00596 * 21 19 17 23 23 H 1.48505 * 109.46938 * 210.00279 * 21 19 17 24 24 H 1.48501 * 109.47103 * 330.00258 * 21 19 17 25 25 C 1.46654 * 110.24953 * 289.49432 * 12 11 10 26 26 H 1.09001 * 109.47050 * 300.00424 * 1 2 3 27 27 H 1.09003 * 109.46726 * 59.99919 * 1 2 3 28 28 H 1.08995 * 109.46939 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47788 * 239.99663 * 2 1 3 30 30 H 1.09002 * 109.47015 * 119.99618 * 2 1 3 31 31 H 1.07998 * 119.26265 * 0.18045 * 4 3 2 32 32 H 1.09002 * 109.38573 * 103.37889 * 10 7 6 33 33 H 1.08998 * 109.39032 * 223.17757 * 10 7 6 34 34 H 1.08997 * 109.67555 * 169.54298 * 11 10 7 35 35 H 1.09003 * 109.66981 * 290.07156 * 11 10 7 36 36 H 1.08996 * 109.47491 * 67.40122 * 15 13 12 37 37 H 1.09001 * 109.46670 * 187.40259 * 15 13 12 38 38 H 1.08996 * 109.47268 * 307.39723 * 15 13 12 39 39 H 1.09000 * 109.46797 * 49.26371 * 16 13 12 40 40 H 1.09002 * 109.46494 * 169.25860 * 16 13 12 41 41 H 0.97009 * 119.99575 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.27050 * 172.62173 * 25 12 11 43 43 H 1.08998 * 109.26739 * 292.12856 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2440 2.0193 -1.1652 5 7 2.6825 3.2475 -1.1953 6 6 2.9315 3.9370 -0.0727 7 6 2.7185 3.3505 1.1314 8 6 2.2444 2.0203 1.1667 9 8 2.0485 1.4582 2.2315 10 6 2.9648 4.0712 2.4292 11 6 3.8388 5.3024 2.1851 12 7 3.2603 6.0703 1.0706 13 6 1.8400 6.3583 1.3111 14 1 1.3460 5.4621 1.6865 15 6 1.1793 6.7944 0.0018 16 6 1.7149 7.4801 2.3439 17 6 2.1233 6.9630 3.6992 18 1 2.3470 5.9149 3.8323 19 6 2.2115 7.8280 4.7692 20 7 2.5684 7.3768 5.9518 21 14 1.8253 9.6411 4.5388 22 1 0.3801 9.8750 4.7878 23 1 2.6287 10.4438 5.4956 24 1 2.1602 10.0459 3.1498 25 6 3.4435 5.3480 -0.1925 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8935 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0580 1.5023 -2.0949 32 1 2.0117 4.3830 2.8564 33 1 3.4712 3.4017 3.1244 34 1 3.8620 5.9198 3.0830 35 1 4.8508 4.9890 1.9285 36 1 1.1513 5.9520 -0.6893 37 1 0.1631 7.1333 0.2030 38 1 1.7528 7.6086 -0.4410 39 1 2.3638 8.3088 2.0605 40 1 0.6815 7.8246 2.3827 41 1 2.6307 7.9855 6.7046 42 1 2.8981 5.8626 -0.9836 43 1 4.5041 5.3250 -0.4431 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569727906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:54 Heat of formation + Delta-G solvation = 22.883605 kcal Electronic energy + Delta-G solvation = -24617.931618 eV Core-core repulsion = 21278.060716 eV Total energy + Delta-G solvation = -3339.870902 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.96204 -39.12945 -37.47421 -35.65821 -33.22719 -32.41018 -31.35234 -30.29423 -29.96295 -27.62256 -25.65034 -24.56933 -23.68440 -22.43801 -22.08928 -21.02227 -18.60951 -18.48490 -17.30277 -16.81940 -16.16103 -15.93493 -15.50149 -14.65320 -14.51134 -14.35906 -14.12473 -13.89869 -13.62567 -13.27875 -12.89554 -12.85397 -12.45760 -12.35079 -12.13503 -11.94002 -11.77180 -11.59147 -11.50414 -11.36717 -10.92791 -10.73281 -10.52058 -10.16695 -10.03796 -9.93106 -9.82021 -9.63734 -9.32376 -8.92351 -8.44268 -8.12992 -7.63034 -5.97080 -3.93088 0.72833 1.92945 2.41190 3.36707 3.44699 3.49535 3.63887 3.96643 4.32894 4.49906 4.52406 4.54495 4.72565 4.86907 4.95689 5.14966 5.30632 5.36767 5.41388 5.51457 5.58026 5.67231 5.74601 5.79083 5.82022 5.94806 6.04065 6.07341 6.23523 6.37142 6.40649 6.47673 6.60219 6.63819 6.82530 6.88416 7.16252 7.23368 7.38328 7.70281 7.84221 7.86919 7.92351 7.97144 8.59423 9.05408 9.65118 11.14403 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.022977 B = 0.004850 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.315459 B = 5771.408367 C = 6281.985425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.087 3.913 3 N -0.527 5.527 4 C 0.351 3.649 5 N -0.530 5.530 6 C 0.133 3.867 7 C -0.227 4.227 8 C 0.518 3.482 9 O -0.531 6.531 10 C -0.091 4.091 11 C 0.041 3.959 12 N -0.503 5.503 13 C 0.082 3.918 14 H 0.046 0.954 15 C -0.153 4.153 16 C -0.007 4.007 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.068 3.932 20 N -0.903 5.903 21 Si 0.875 3.125 22 H -0.281 1.281 23 H -0.290 1.290 24 H -0.263 1.263 25 C 0.089 3.911 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.197 0.803 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.138 0.862 35 H 0.057 0.943 36 H 0.044 0.956 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.030 0.970 40 H 0.013 0.987 41 H 0.262 0.738 42 H 0.102 0.898 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.044 -12.413 -17.214 21.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.035 4.035 3 N -0.246 5.246 4 C 0.066 3.934 5 N -0.251 5.251 6 C 0.014 3.986 7 C -0.233 4.233 8 C 0.318 3.682 9 O -0.409 6.409 10 C -0.130 4.130 11 C -0.086 4.086 12 N -0.224 5.224 13 C -0.026 4.026 14 H 0.064 0.936 15 C -0.210 4.210 16 C -0.045 4.045 17 C -0.560 4.560 18 H 0.106 0.894 19 C -0.133 4.133 20 N -0.542 5.542 21 Si 0.703 3.297 22 H -0.207 1.207 23 H -0.217 1.217 24 H -0.188 1.188 25 C -0.040 4.040 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.214 0.786 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.155 0.845 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.031 0.969 41 H 0.071 0.929 42 H 0.120 0.880 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.698 -11.705 -16.972 20.629 hybrid contribution -0.887 -0.444 0.683 1.204 sum -1.585 -12.149 -16.289 20.382 Atomic orbital electron populations 1.22121 0.94069 1.03243 1.03174 1.21939 0.95957 0.80608 1.04980 1.46814 1.54040 1.15526 1.08270 1.24755 0.89372 0.89449 0.89851 1.68253 1.20156 1.05878 1.30838 1.21969 0.91318 0.98018 0.87313 1.21371 1.09040 0.94384 0.98513 1.17336 0.80003 0.87758 0.83148 1.90928 1.53643 1.68311 1.28043 1.20797 1.03291 0.97043 0.91872 1.22787 0.95210 0.92931 0.97670 1.62808 1.17174 1.41459 1.00979 1.21784 0.86184 0.99489 0.95119 0.93635 1.22074 1.00555 1.00703 0.97673 1.19641 0.96228 0.94343 0.94255 1.21406 1.45640 0.97426 0.91500 0.89423 1.25000 0.94734 0.98406 0.95118 1.69916 1.48513 1.35324 1.00423 0.86848 0.78269 0.86170 0.78391 1.20698 1.21666 1.18781 1.21370 1.01340 0.85351 0.95987 0.91568 0.92051 0.90488 0.88871 0.88224 0.78611 0.88602 0.90517 0.84459 0.92480 0.93746 0.92610 0.92103 0.95130 0.96932 0.92869 0.87969 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 10.24 37.16 0.38 -0.93 16 2 C 0.09 0.72 6.10 -4.04 -0.02 0.70 16 3 N -0.53 -6.29 2.57 -121.11 -0.31 -6.60 16 4 C 0.35 3.54 11.48 -90.69 -1.04 2.50 16 5 N -0.53 -6.98 10.28 -10.79 -0.11 -7.09 16 6 C 0.13 2.09 6.06 -82.61 -0.50 1.59 16 7 C -0.23 -4.02 5.24 -104.52 -0.55 -4.56 16 8 C 0.52 8.82 7.43 -15.04 -0.11 8.71 16 9 O -0.53 -10.69 16.06 4.93 0.08 -10.61 16 10 C -0.09 -1.81 4.31 -28.02 -0.12 -1.93 16 11 C 0.04 0.81 5.38 -3.69 -0.02 0.79 16 12 N -0.50 -9.41 4.88 -228.16 -1.11 -10.52 16 13 C 0.08 1.63 1.86 -67.71 -0.13 1.50 16 14 H 0.05 0.99 5.10 -51.93 -0.27 0.72 16 15 C -0.15 -2.53 7.97 37.16 0.30 -2.23 16 16 C -0.01 -0.16 3.74 -27.88 -0.10 -0.27 16 17 C -0.52 -14.09 7.50 -34.44 -0.26 -14.35 16 18 H 0.09 2.46 4.20 -52.49 -0.22 2.24 16 19 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 20 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 21 Si 0.88 21.65 27.59 -169.99 -4.69 16.96 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.26 -6.30 6.37 56.52 0.36 -5.94 16 25 C 0.09 1.39 5.30 -5.17 -0.03 1.36 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.09 0.40 8.02 -51.93 -0.42 -0.02 16 30 H 0.10 0.98 7.46 -51.93 -0.39 0.59 16 31 H 0.20 0.93 8.03 -52.49 -0.42 0.51 16 32 H 0.10 2.18 5.19 -51.93 -0.27 1.91 16 33 H 0.08 1.57 7.94 -51.93 -0.41 1.15 16 34 H 0.14 3.20 5.06 -51.93 -0.26 2.94 16 35 H 0.06 1.02 8.06 -51.93 -0.42 0.60 16 36 H 0.04 0.68 6.47 -51.93 -0.34 0.34 16 37 H 0.05 0.89 8.06 -51.93 -0.42 0.47 16 38 H 0.06 0.96 8.06 -51.93 -0.42 0.54 16 39 H 0.03 0.74 6.77 -51.93 -0.35 0.39 16 40 H 0.01 0.29 7.77 -51.93 -0.40 -0.11 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.10 1.49 5.60 -51.93 -0.29 1.20 16 43 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 326.68 15.07 4.92 4.92 Total: -1.00 -33.17 326.68 -8.91 -42.09 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.16 Total: 2.60 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -2.30 Total: -5.27 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: -0.76 Total: -50.70 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.69 Total: 16.96 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.17 -8.91 -42.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569727906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.972 kcal (2) G-P(sol) polarization free energy of solvation -33.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds