Wall clock time and date at job start Tue Mar 31 2020 06:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47595 * 2 1 4 4 C 1.34752 * 120.15517 * 270.00530 * 3 2 1 5 5 N 1.30443 * 121.47819 * 180.20107 * 4 3 2 6 6 C 1.34077 * 121.82220 * 0.02562 * 5 4 3 7 7 C 1.35618 * 119.46085 * 359.70323 * 6 5 4 8 8 C 1.34939 * 120.15839 * 89.99593 * 3 2 1 9 9 O 1.21985 * 120.63430 * 0.15333 * 8 3 2 10 10 C 1.50470 * 122.20179 * 180.58571 * 7 6 5 11 11 C 1.52951 * 109.96563 * 343.23335 * 10 7 6 12 12 N 1.47188 * 108.42983 * 49.80708 * 11 10 7 13 13 C 1.46898 * 111.00140 * 52.91382 * 12 11 10 14 14 H 1.09001 * 109.46873 * 315.80203 * 13 12 11 15 15 C 1.52998 * 109.46996 * 195.79951 * 13 12 11 16 16 C 1.53000 * 109.46822 * 75.79696 * 13 12 11 17 17 C 1.50698 * 109.47193 * 289.25951 * 16 13 12 18 18 H 1.07994 * 120.00143 * 353.99446 * 17 16 13 19 19 C 1.37881 * 119.99838 * 173.99518 * 17 16 13 20 20 N 1.31511 * 119.99664 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99875 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47142 * 90.00596 * 21 19 17 23 23 H 1.48505 * 109.46938 * 210.00279 * 21 19 17 24 24 H 1.48501 * 109.47103 * 330.00258 * 21 19 17 25 25 C 1.46654 * 110.24953 * 289.49432 * 12 11 10 26 26 H 1.09001 * 109.47050 * 300.00424 * 1 2 3 27 27 H 1.09003 * 109.46726 * 59.99919 * 1 2 3 28 28 H 1.08995 * 109.46939 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47788 * 239.99663 * 2 1 3 30 30 H 1.09002 * 109.47015 * 119.99618 * 2 1 3 31 31 H 1.07998 * 119.26265 * 0.18045 * 4 3 2 32 32 H 1.09002 * 109.38573 * 103.37889 * 10 7 6 33 33 H 1.08998 * 109.39032 * 223.17757 * 10 7 6 34 34 H 1.08997 * 109.67555 * 169.54298 * 11 10 7 35 35 H 1.09003 * 109.66981 * 290.07156 * 11 10 7 36 36 H 1.08996 * 109.47491 * 67.40122 * 15 13 12 37 37 H 1.09001 * 109.46670 * 187.40259 * 15 13 12 38 38 H 1.08996 * 109.47268 * 307.39723 * 15 13 12 39 39 H 1.09000 * 109.46797 * 49.26371 * 16 13 12 40 40 H 1.09002 * 109.46494 * 169.25860 * 16 13 12 41 41 H 0.97009 * 119.99575 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.27050 * 172.62173 * 25 12 11 43 43 H 1.08998 * 109.26739 * 292.12856 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2440 2.0193 -1.1652 5 7 2.6825 3.2475 -1.1953 6 6 2.9315 3.9370 -0.0727 7 6 2.7185 3.3505 1.1314 8 6 2.2444 2.0203 1.1667 9 8 2.0485 1.4582 2.2315 10 6 2.9648 4.0712 2.4292 11 6 3.8388 5.3024 2.1851 12 7 3.2603 6.0703 1.0706 13 6 1.8400 6.3583 1.3111 14 1 1.3460 5.4621 1.6865 15 6 1.1793 6.7944 0.0018 16 6 1.7149 7.4801 2.3439 17 6 2.1233 6.9630 3.6992 18 1 2.3470 5.9149 3.8323 19 6 2.2115 7.8280 4.7692 20 7 2.5684 7.3768 5.9518 21 14 1.8253 9.6411 4.5388 22 1 0.3801 9.8750 4.7878 23 1 2.6287 10.4438 5.4956 24 1 2.1602 10.0459 3.1498 25 6 3.4435 5.3480 -0.1925 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8935 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0580 1.5023 -2.0949 32 1 2.0117 4.3830 2.8564 33 1 3.4712 3.4017 3.1244 34 1 3.8620 5.9198 3.0830 35 1 4.8508 4.9890 1.9285 36 1 1.1513 5.9520 -0.6893 37 1 0.1631 7.1333 0.2030 38 1 1.7528 7.6086 -0.4410 39 1 2.3638 8.3088 2.0605 40 1 0.6815 7.8246 2.3827 41 1 2.6307 7.9855 6.7046 42 1 2.8981 5.8626 -0.9836 43 1 4.5041 5.3250 -0.4431 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569727906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:53 Heat of formation + Delta-G solvation = -0.466815 kcal Electronic energy + Delta-G solvation = -24618.944168 eV Core-core repulsion = 21278.060716 eV Total energy + Delta-G solvation = -3340.883452 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.11404 -40.53562 -38.73024 -36.79924 -34.98592 -34.09864 -32.60056 -31.56761 -31.27574 -29.32583 -26.94506 -25.69362 -25.00877 -23.81718 -23.45764 -22.54867 -20.08782 -19.67799 -18.84692 -18.28969 -17.30795 -17.19716 -16.94668 -16.33373 -16.05914 -15.41352 -15.33034 -15.13735 -15.02881 -14.48179 -14.36462 -14.17253 -13.87637 -13.71379 -13.60439 -13.27007 -13.17011 -13.14728 -12.86814 -12.48683 -12.38345 -12.23247 -12.17137 -11.87008 -11.53219 -11.27363 -11.23922 -11.05904 -10.93900 -10.90835 -10.61132 -9.44189 -9.16820 -8.16367 -6.15760 -0.36913 0.76152 1.38684 1.41330 1.44890 1.52786 2.44120 2.48798 2.97141 3.08265 3.19423 3.45514 3.67621 3.82547 4.03500 4.05462 4.08262 4.16286 4.20146 4.28072 4.37482 4.45006 4.55283 4.62004 4.65661 4.79559 4.83354 4.85423 4.95857 5.01135 5.16898 5.19556 5.20582 5.21787 5.30364 5.37668 5.46738 5.53889 5.58215 5.75675 6.19648 6.30924 6.47484 6.71313 6.78780 6.89870 7.44601 8.98164 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.022977 B = 0.004850 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.315459 B = 5771.408367 C = 6281.985425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.082 3.918 3 N -0.520 5.520 4 C 0.379 3.621 5 N -0.544 5.544 6 C 0.164 3.836 7 C -0.278 4.278 8 C 0.510 3.490 9 O -0.583 6.583 10 C -0.072 4.072 11 C 0.053 3.947 12 N -0.507 5.507 13 C 0.086 3.914 14 H 0.021 0.979 15 C -0.142 4.142 16 C -0.005 4.005 17 C -0.516 4.516 18 H 0.061 0.939 19 C 0.005 3.995 20 N -0.954 5.954 21 Si 0.940 3.060 22 H -0.275 1.275 23 H -0.291 1.291 24 H -0.245 1.245 25 C 0.087 3.913 26 H 0.021 0.979 27 H 0.081 0.919 28 H 0.101 0.899 29 H 0.153 0.847 30 H 0.077 0.923 31 H 0.267 0.733 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.029 0.971 40 H 0.015 0.985 41 H 0.261 0.739 42 H 0.124 0.876 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.471 -12.845 -22.617 26.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.039 4.039 3 N -0.236 5.236 4 C 0.096 3.904 5 N -0.265 5.265 6 C 0.043 3.957 7 C -0.285 4.285 8 C 0.310 3.690 9 O -0.465 6.465 10 C -0.112 4.112 11 C -0.075 4.075 12 N -0.229 5.229 13 C -0.022 4.022 14 H 0.039 0.961 15 C -0.200 4.200 16 C -0.043 4.043 17 C -0.554 4.554 18 H 0.079 0.921 19 C -0.191 4.191 20 N -0.596 5.596 21 Si 0.765 3.235 22 H -0.201 1.201 23 H -0.218 1.218 24 H -0.168 1.168 25 C -0.041 4.041 26 H 0.041 0.959 27 H 0.100 0.900 28 H 0.120 0.880 29 H 0.171 0.829 30 H 0.095 0.905 31 H 0.283 0.717 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.048 0.952 40 H 0.033 0.967 41 H 0.069 0.931 42 H 0.142 0.858 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.145 -12.180 -22.443 25.561 hybrid contribution -0.756 -0.494 2.234 2.410 sum -1.901 -12.675 -20.209 23.930 Atomic orbital electron populations 1.22119 0.93594 1.04554 1.01925 1.22341 0.96291 0.78416 1.06811 1.46907 1.52514 1.16870 1.07308 1.26152 0.84904 0.88392 0.90916 1.68353 1.22039 1.07380 1.28750 1.21952 0.88622 0.97932 0.87231 1.21065 1.13926 0.95596 0.97881 1.17326 0.79845 0.87756 0.84064 1.90888 1.56009 1.69368 1.30230 1.20372 1.00690 0.96877 0.93226 1.22435 0.96236 0.92148 0.96689 1.62721 1.16202 1.42170 1.01779 1.21616 0.87224 0.97198 0.96188 0.96106 1.21981 1.00578 1.01795 0.95621 1.19599 0.95905 0.95469 0.93277 1.21770 1.43718 0.96540 0.93400 0.92100 1.25871 0.95168 1.03229 0.94791 1.70080 1.51056 1.36924 1.01497 0.85810 0.78105 0.80498 0.79078 1.20098 1.21761 1.16819 1.21529 1.03035 0.85234 0.94348 0.95926 0.90050 0.87987 0.82931 0.90471 0.71719 0.93066 0.93197 0.88956 0.90657 0.91931 0.92059 0.90619 0.95217 0.96675 0.93056 0.85794 0.86905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 10.24 71.98 0.74 -1.37 16 2 C 0.08 1.08 6.10 86.38 0.53 1.61 16 3 N -0.52 -11.01 2.57 -655.07 -1.68 -12.70 16 4 C 0.38 5.59 11.48 180.37 2.07 7.66 16 5 N -0.54 -11.86 10.28 -188.06 -1.93 -13.80 16 6 C 0.16 4.82 6.06 41.57 0.25 5.07 16 7 C -0.28 -10.12 5.24 -19.80 -0.10 -10.23 16 8 C 0.51 17.77 7.43 84.96 0.63 18.40 16 9 O -0.58 -25.28 16.06 -5.27 -0.08 -25.37 16 10 C -0.07 -3.16 4.31 29.76 0.13 -3.03 16 11 C 0.05 2.21 5.38 86.23 0.46 2.67 16 12 N -0.51 -18.86 4.88 -875.76 -4.27 -23.13 16 13 C 0.09 3.42 1.86 44.92 0.08 3.50 16 14 H 0.02 0.95 5.10 -2.39 -0.01 0.94 16 15 C -0.14 -4.31 7.97 71.98 0.57 -3.74 16 16 C 0.00 -0.23 3.74 29.85 0.11 -0.12 16 17 C -0.52 -29.44 7.50 25.60 0.19 -29.25 16 18 H 0.06 3.75 4.20 -2.91 -0.01 3.74 16 19 C 0.01 0.31 5.47 84.66 0.46 0.77 16 20 N -0.95 -60.98 13.96 21.45 0.30 -60.68 16 21 Si 0.94 45.56 27.59 68.60 1.89 47.46 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 23 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 24 H -0.24 -11.01 6.37 99.48 0.63 -10.38 16 25 C 0.09 2.49 5.30 85.57 0.45 2.94 16 26 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.15 0.29 8.02 -2.39 -0.02 0.27 16 30 H 0.08 1.44 7.46 -2.39 -0.02 1.42 16 31 H 0.27 0.14 8.03 -2.91 -0.02 0.12 16 32 H 0.05 2.63 5.19 -2.39 -0.01 2.62 16 33 H 0.05 2.32 7.94 -2.39 -0.02 2.31 16 34 H 0.09 4.71 5.06 -2.39 -0.01 4.69 16 35 H 0.08 2.80 8.06 -2.39 -0.02 2.78 16 36 H 0.06 1.67 6.47 -2.39 -0.02 1.65 16 37 H 0.06 1.79 8.06 -2.39 -0.02 1.78 16 38 H 0.07 2.09 8.06 -2.39 -0.02 2.07 16 39 H 0.03 1.41 6.77 -2.39 -0.02 1.39 16 40 H 0.02 0.70 7.77 -2.39 -0.02 0.69 16 41 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16 42 H 0.12 3.08 5.60 -2.39 -0.01 3.06 16 43 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -81.79 326.68 1.76 -80.03 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.95 Total: 13.28 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: 6.58 Total: -5.09 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -7.59 Total: -110.31 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.08 Total: -25.37 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.89 Total: 47.46 kcal Total: -81.79 1.76 -80.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569727906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.566 kcal (2) G-P(sol) polarization free energy of solvation -81.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds