Wall clock time and date at job start Tue Mar 31 2020 06:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47425 * 2 1 4 4 C 1.34757 * 120.14896 * 270.00141 * 3 2 1 5 5 N 1.30441 * 121.47429 * 180.20143 * 4 3 2 6 6 C 1.34078 * 121.81969 * 0.02562 * 5 4 3 7 7 C 1.35613 * 119.46743 * 359.71087 * 6 5 4 8 8 C 1.34924 * 120.15871 * 89.99726 * 3 2 1 9 9 O 1.21984 * 120.63922 * 0.15173 * 8 3 2 10 10 C 1.50464 * 122.20795 * 180.59012 * 7 6 5 11 11 C 1.52957 * 109.96116 * 343.21559 * 10 7 6 12 12 N 1.47184 * 108.42445 * 49.81469 * 11 10 7 13 13 C 1.46903 * 111.00068 * 52.91485 * 12 11 10 14 14 H 1.09001 * 109.46682 * 286.77039 * 13 12 11 15 15 C 1.52991 * 109.47435 * 46.77256 * 13 12 11 16 16 C 1.53004 * 109.47259 * 166.77922 * 13 12 11 17 17 C 1.50698 * 109.47485 * 75.30434 * 16 13 12 18 18 H 1.07997 * 120.00010 * 5.61573 * 17 16 13 19 19 C 1.37870 * 119.99962 * 185.61576 * 17 16 13 20 20 N 1.31515 * 119.99873 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00070 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47006 * 90.00443 * 21 19 17 23 23 H 1.48504 * 109.47189 * 210.00198 * 21 19 17 24 24 H 1.48497 * 109.47232 * 329.99985 * 21 19 17 25 25 C 1.46652 * 110.25001 * 289.49126 * 12 11 10 26 26 H 1.09001 * 109.46762 * 60.00637 * 1 2 3 27 27 H 1.08997 * 109.47469 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47457 * 300.00798 * 1 2 3 29 29 H 1.09001 * 109.47457 * 239.99202 * 2 1 3 30 30 H 1.09008 * 109.46910 * 120.00042 * 2 1 3 31 31 H 1.07991 * 119.26401 * 0.18577 * 4 3 2 32 32 H 1.08994 * 109.39672 * 103.37144 * 10 7 6 33 33 H 1.09004 * 109.38988 * 223.17268 * 10 7 6 34 34 H 1.09003 * 109.66836 * 169.54811 * 11 10 7 35 35 H 1.09000 * 109.67511 * 290.04319 * 11 10 7 36 36 H 1.08998 * 109.47355 * 180.02562 * 15 13 12 37 37 H 1.09001 * 109.47358 * 300.00350 * 15 13 12 38 38 H 1.09001 * 109.47362 * 60.00200 * 15 13 12 39 39 H 1.09001 * 109.46958 * 195.30803 * 16 13 12 40 40 H 1.09005 * 109.46308 * 315.30338 * 16 13 12 41 41 H 0.97004 * 120.00136 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.26559 * 172.62410 * 25 12 11 43 43 H 1.08994 * 109.26585 * 292.09030 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2440 2.0193 -1.1653 5 7 2.6824 3.2475 -1.1955 6 6 2.9313 3.9370 -0.0728 7 6 2.7185 3.3506 1.1313 8 6 2.2443 2.0203 1.1666 9 8 2.0485 1.4583 2.2314 10 6 2.9646 4.0713 2.4290 11 6 3.8388 5.3025 2.1848 12 7 3.2602 6.0702 1.0703 13 6 1.8399 6.3584 1.3108 14 1 1.2570 5.4468 1.1791 15 6 1.6594 6.8774 2.7386 16 6 1.3594 7.4187 0.3180 17 6 1.1803 6.7909 -1.0402 18 1 1.3002 5.7245 -1.1622 19 6 0.8634 7.5778 -2.1270 20 7 0.7066 7.0297 -3.3122 21 14 0.6553 9.4221 -1.9159 22 1 1.9627 10.0947 -2.1242 23 1 -0.3251 9.9267 -2.9107 24 1 0.1627 9.7109 -0.5451 25 6 3.4435 5.3479 -0.1927 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 1.8934 -0.5140 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 2.0579 1.5023 -2.0949 32 1 2.0116 4.3832 2.8562 33 1 3.4711 3.4019 3.1243 34 1 3.8619 5.9199 3.0828 35 1 4.8509 4.9890 1.9289 36 1 0.6056 7.0908 2.9172 37 1 2.0017 6.1220 3.4459 38 1 2.2424 7.7890 2.8703 39 1 0.4082 7.8292 0.6569 40 1 2.0979 8.2179 0.2544 41 1 0.4839 7.5834 -4.0770 42 1 2.8981 5.8625 -0.9838 43 1 4.5039 5.3255 -0.4436 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569727909.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:58 Heat of formation + Delta-G solvation = 19.437975 kcal Electronic energy + Delta-G solvation = -24818.992086 eV Core-core repulsion = 21478.971770 eV Total energy + Delta-G solvation = -3340.020316 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.78078 -39.07796 -37.30468 -35.50086 -33.48330 -31.98849 -31.36526 -30.29361 -29.88190 -27.61190 -25.46412 -24.57078 -23.50170 -22.36029 -22.08571 -20.97831 -18.59692 -18.32661 -17.14500 -16.83285 -16.06092 -15.91687 -15.33303 -14.70926 -14.42111 -14.20933 -14.06234 -13.87568 -13.50062 -13.19147 -12.84601 -12.52792 -12.48386 -12.36019 -12.12741 -11.83692 -11.63259 -11.53681 -11.47989 -11.42957 -10.95729 -10.77324 -10.70411 -10.17029 -9.94045 -9.83183 -9.66454 -9.57943 -9.33005 -8.95058 -8.48256 -7.97650 -7.70729 -6.03256 -3.99095 0.94564 2.17358 2.60265 3.34041 3.41448 3.46061 3.85529 4.24622 4.47386 4.49588 4.60292 4.75382 4.88787 5.02787 5.11846 5.17666 5.28367 5.38664 5.42934 5.54834 5.64014 5.66158 5.78770 5.86783 5.94762 6.00309 6.06948 6.15252 6.18994 6.32542 6.38565 6.48897 6.60332 6.73292 6.76272 6.81158 7.16065 7.22162 7.33805 7.68373 7.82950 7.90773 8.05951 8.20041 8.52782 8.98704 9.58148 11.07439 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016699 B = 0.006054 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.335836 B = 4623.972798 C = 5599.225844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.089 3.911 3 N -0.528 5.528 4 C 0.357 3.643 5 N -0.511 5.511 6 C 0.177 3.823 7 C -0.267 4.267 8 C 0.524 3.476 9 O -0.551 6.551 10 C -0.083 4.083 11 C 0.044 3.956 12 N -0.506 5.506 13 C 0.088 3.912 14 H 0.039 0.961 15 C -0.153 4.153 16 C -0.008 4.008 17 C -0.525 4.525 18 H 0.086 0.914 19 C 0.072 3.928 20 N -0.894 5.894 21 Si 0.878 3.122 22 H -0.276 1.276 23 H -0.291 1.291 24 H -0.267 1.267 25 C 0.058 3.942 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.199 0.801 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.017 0.983 40 H 0.027 0.973 41 H 0.262 0.738 42 H 0.175 0.825 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.728 -11.096 5.855 13.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.034 4.034 3 N -0.247 5.247 4 C 0.072 3.928 5 N -0.230 5.230 6 C 0.057 3.943 7 C -0.273 4.273 8 C 0.325 3.675 9 O -0.432 6.432 10 C -0.123 4.123 11 C -0.084 4.084 12 N -0.227 5.227 13 C -0.020 4.020 14 H 0.057 0.943 15 C -0.210 4.210 16 C -0.046 4.046 17 C -0.562 4.562 18 H 0.103 0.897 19 C -0.130 4.130 20 N -0.532 5.532 21 Si 0.706 3.294 22 H -0.202 1.202 23 H -0.217 1.217 24 H -0.192 1.192 25 C -0.070 4.070 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.215 0.785 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.036 0.964 40 H 0.045 0.955 41 H 0.072 0.928 42 H 0.192 0.808 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.993 -10.402 5.693 12.513 hybrid contribution -0.870 -0.416 0.636 1.155 sum 3.123 -10.818 6.329 12.917 Atomic orbital electron populations 1.22123 0.94138 1.03046 1.03349 1.21908 0.95951 0.80747 1.04744 1.46811 1.54111 1.15432 1.08346 1.24954 0.88735 0.89419 0.89732 1.68387 1.19077 1.05024 1.30519 1.22036 0.87923 0.97429 0.86958 1.20982 1.13633 0.94958 0.97762 1.17183 0.79705 0.87583 0.83074 1.90860 1.55330 1.68762 1.28218 1.20664 1.01455 0.97046 0.93122 1.22351 0.97587 0.92462 0.96035 1.62761 1.17156 1.41662 1.01150 1.21680 0.86809 0.98818 0.94706 0.94285 1.22083 1.01296 1.01086 0.96551 1.19660 0.95654 0.94644 0.94637 1.21254 1.47552 0.96416 0.91024 0.89664 1.25006 0.94480 0.98361 0.95191 1.69929 1.47938 1.35752 0.99542 0.86807 0.78191 0.86364 0.78084 1.20177 1.21740 1.19187 1.22195 1.01999 0.85881 0.96923 0.91739 0.90647 0.91764 0.88886 0.88479 0.78463 0.90550 0.90977 0.89995 0.91184 0.92736 0.93133 0.92271 0.96434 0.95500 0.92807 0.80831 0.89642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 10.24 37.16 0.38 -1.26 16 2 C 0.09 0.89 6.10 -4.04 -0.02 0.86 16 3 N -0.53 -7.45 2.57 -121.10 -0.31 -7.76 16 4 C 0.36 4.98 11.48 -90.68 -1.04 3.93 16 5 N -0.51 -9.28 10.28 -10.80 -0.11 -9.39 16 6 C 0.18 3.37 5.50 -82.61 -0.45 2.91 16 7 C -0.27 -4.90 5.09 -104.52 -0.53 -5.44 16 8 C 0.52 9.36 7.43 -15.04 -0.11 9.24 16 9 O -0.55 -10.87 16.06 4.93 0.08 -10.79 16 10 C -0.08 -1.40 4.63 -28.02 -0.13 -1.53 16 11 C 0.04 0.69 5.40 -3.69 -0.02 0.67 16 12 N -0.51 -9.49 4.88 -228.16 -1.11 -10.61 16 13 C 0.09 1.76 1.57 -67.71 -0.11 1.65 16 14 H 0.04 0.87 5.96 -51.93 -0.31 0.56 16 15 C -0.15 -2.55 8.17 37.15 0.30 -2.25 16 16 C -0.01 -0.19 3.66 -27.88 -0.10 -0.30 16 17 C -0.53 -14.04 7.18 -34.44 -0.25 -14.29 16 18 H 0.09 2.42 5.92 -52.49 -0.31 2.11 16 19 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 20 N -0.89 -26.24 13.96 55.43 0.77 -25.47 16 21 Si 0.88 21.31 27.36 -169.99 -4.65 16.66 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.27 -6.32 6.71 56.52 0.38 -5.94 16 25 C 0.06 1.14 5.30 -5.17 -0.03 1.12 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.09 0.58 8.02 -51.93 -0.42 0.17 16 30 H 0.10 1.05 7.46 -51.92 -0.39 0.66 16 31 H 0.20 1.80 8.03 -52.49 -0.42 1.38 16 32 H 0.08 1.34 5.68 -51.93 -0.29 1.04 16 33 H 0.07 1.16 7.94 -51.93 -0.41 0.75 16 34 H 0.08 1.15 6.68 -51.93 -0.35 0.81 16 35 H 0.07 1.03 8.06 -51.93 -0.42 0.61 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.75 5.05 -51.93 -0.26 0.49 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.02 0.42 7.49 -51.93 -0.39 0.03 16 40 H 0.03 0.63 7.26 -51.93 -0.38 0.26 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.18 4.14 3.96 -51.93 -0.21 3.93 16 43 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 327.92 15.07 4.94 4.94 Total: -1.00 -32.60 327.92 -8.85 -41.45 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.25 Total: 3.72 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -2.21 Total: -2.75 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -0.76 Total: -53.22 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.65 Total: 16.66 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.60 -8.85 -41.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569727909.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.883 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds