Wall clock time and date at job start Tue Mar 31 2020 06:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47425 * 2 1 4 4 C 1.34757 * 120.14896 * 270.00141 * 3 2 1 5 5 N 1.30441 * 121.47429 * 180.20143 * 4 3 2 6 6 C 1.34078 * 121.81969 * 0.02562 * 5 4 3 7 7 C 1.35613 * 119.46743 * 359.71087 * 6 5 4 8 8 C 1.34924 * 120.15871 * 89.99726 * 3 2 1 9 9 O 1.21984 * 120.63922 * 0.15173 * 8 3 2 10 10 C 1.50464 * 122.20795 * 180.59012 * 7 6 5 11 11 C 1.52957 * 109.96116 * 343.21559 * 10 7 6 12 12 N 1.47184 * 108.42445 * 49.81469 * 11 10 7 13 13 C 1.46903 * 111.00068 * 52.91485 * 12 11 10 14 14 H 1.09001 * 109.46682 * 286.77039 * 13 12 11 15 15 C 1.52991 * 109.47435 * 46.77256 * 13 12 11 16 16 C 1.53004 * 109.47259 * 166.77922 * 13 12 11 17 17 C 1.50698 * 109.47485 * 75.30434 * 16 13 12 18 18 H 1.07997 * 120.00010 * 5.61573 * 17 16 13 19 19 C 1.37870 * 119.99962 * 185.61576 * 17 16 13 20 20 N 1.31515 * 119.99873 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00070 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47006 * 90.00443 * 21 19 17 23 23 H 1.48504 * 109.47189 * 210.00198 * 21 19 17 24 24 H 1.48497 * 109.47232 * 329.99985 * 21 19 17 25 25 C 1.46652 * 110.25001 * 289.49126 * 12 11 10 26 26 H 1.09001 * 109.46762 * 60.00637 * 1 2 3 27 27 H 1.08997 * 109.47469 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47457 * 300.00798 * 1 2 3 29 29 H 1.09001 * 109.47457 * 239.99202 * 2 1 3 30 30 H 1.09008 * 109.46910 * 120.00042 * 2 1 3 31 31 H 1.07991 * 119.26401 * 0.18577 * 4 3 2 32 32 H 1.08994 * 109.39672 * 103.37144 * 10 7 6 33 33 H 1.09004 * 109.38988 * 223.17268 * 10 7 6 34 34 H 1.09003 * 109.66836 * 169.54811 * 11 10 7 35 35 H 1.09000 * 109.67511 * 290.04319 * 11 10 7 36 36 H 1.08998 * 109.47355 * 180.02562 * 15 13 12 37 37 H 1.09001 * 109.47358 * 300.00350 * 15 13 12 38 38 H 1.09001 * 109.47362 * 60.00200 * 15 13 12 39 39 H 1.09001 * 109.46958 * 195.30803 * 16 13 12 40 40 H 1.09005 * 109.46308 * 315.30338 * 16 13 12 41 41 H 0.97004 * 120.00136 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.26559 * 172.62410 * 25 12 11 43 43 H 1.08994 * 109.26585 * 292.09030 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2440 2.0193 -1.1653 5 7 2.6824 3.2475 -1.1955 6 6 2.9313 3.9370 -0.0728 7 6 2.7185 3.3506 1.1313 8 6 2.2443 2.0203 1.1666 9 8 2.0485 1.4583 2.2314 10 6 2.9646 4.0713 2.4290 11 6 3.8388 5.3025 2.1848 12 7 3.2602 6.0702 1.0703 13 6 1.8399 6.3584 1.3108 14 1 1.2570 5.4468 1.1791 15 6 1.6594 6.8774 2.7386 16 6 1.3594 7.4187 0.3180 17 6 1.1803 6.7909 -1.0402 18 1 1.3002 5.7245 -1.1622 19 6 0.8634 7.5778 -2.1270 20 7 0.7066 7.0297 -3.3122 21 14 0.6553 9.4221 -1.9159 22 1 1.9627 10.0947 -2.1242 23 1 -0.3251 9.9267 -2.9107 24 1 0.1627 9.7109 -0.5451 25 6 3.4435 5.3479 -0.1927 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 1.8934 -0.5140 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 2.0579 1.5023 -2.0949 32 1 2.0116 4.3832 2.8562 33 1 3.4711 3.4019 3.1243 34 1 3.8619 5.9199 3.0828 35 1 4.8509 4.9890 1.9289 36 1 0.6056 7.0908 2.9172 37 1 2.0017 6.1220 3.4459 38 1 2.2424 7.7890 2.8703 39 1 0.4082 7.8292 0.6569 40 1 2.0979 8.2179 0.2544 41 1 0.4839 7.5834 -4.0770 42 1 2.8981 5.8625 -0.9838 43 1 4.5039 5.3255 -0.4436 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569727909.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:57 Heat of formation + Delta-G solvation = -2.376123 kcal Electronic energy + Delta-G solvation = -24819.938016 eV Core-core repulsion = 21478.971770 eV Total energy + Delta-G solvation = -3340.966246 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.06955 -40.49379 -38.67303 -36.75287 -35.24980 -33.71500 -32.62880 -31.55530 -31.31825 -29.29936 -26.76490 -25.89160 -24.81240 -23.86973 -23.47115 -22.45055 -20.10226 -19.65007 -18.83963 -18.26128 -17.40559 -17.21249 -16.81347 -16.30720 -16.03558 -15.36980 -15.32079 -15.07300 -14.94437 -14.70893 -14.31565 -14.06177 -13.81626 -13.63851 -13.41934 -13.33165 -13.14971 -12.98572 -12.97327 -12.49970 -12.45177 -12.27036 -12.18365 -11.76363 -11.71536 -11.26432 -11.13221 -11.07180 -10.90347 -10.82955 -10.55114 -9.36015 -9.20429 -8.15698 -6.13941 -0.33331 0.81992 1.41374 1.43122 1.49056 1.53487 2.44626 2.54667 2.97868 3.17209 3.23244 3.47090 3.69898 3.83932 4.01174 4.07155 4.07634 4.21336 4.24052 4.30388 4.36996 4.44929 4.59592 4.66032 4.70783 4.79256 4.82652 4.87270 4.97788 5.01783 5.08741 5.14958 5.18040 5.29635 5.34320 5.43513 5.46736 5.53504 5.59050 5.74164 6.20086 6.32327 6.46900 6.72628 6.87998 6.91446 7.44692 8.97705 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016699 B = 0.006054 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.335836 B = 4623.972798 C = 5599.225844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.083 3.917 3 N -0.522 5.522 4 C 0.373 3.627 5 N -0.555 5.555 6 C 0.172 3.828 7 C -0.287 4.287 8 C 0.515 3.485 9 O -0.577 6.577 10 C -0.078 4.078 11 C 0.050 3.950 12 N -0.509 5.509 13 C 0.095 3.905 14 H 0.011 0.989 15 C -0.146 4.146 16 C -0.006 4.006 17 C -0.517 4.517 18 H 0.059 0.941 19 C 0.016 3.984 20 N -0.938 5.938 21 Si 0.936 3.064 22 H -0.270 1.270 23 H -0.292 1.292 24 H -0.255 1.255 25 C 0.063 3.937 26 H 0.066 0.934 27 H 0.106 0.894 28 H 0.028 0.972 29 H 0.143 0.857 30 H 0.089 0.911 31 H 0.251 0.749 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.015 0.985 40 H 0.027 0.973 41 H 0.262 0.738 42 H 0.134 0.866 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.180 -11.681 6.640 14.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.037 4.037 3 N -0.239 5.239 4 C 0.089 3.911 5 N -0.276 5.276 6 C 0.051 3.949 7 C -0.294 4.294 8 C 0.316 3.684 9 O -0.460 6.460 10 C -0.117 4.117 11 C -0.078 4.078 12 N -0.230 5.230 13 C -0.013 4.013 14 H 0.029 0.971 15 C -0.203 4.203 16 C -0.044 4.044 17 C -0.555 4.555 18 H 0.077 0.923 19 C -0.182 4.182 20 N -0.578 5.578 21 Si 0.762 3.238 22 H -0.195 1.195 23 H -0.218 1.218 24 H -0.179 1.179 25 C -0.066 4.066 26 H 0.085 0.915 27 H 0.124 0.876 28 H 0.048 0.952 29 H 0.161 0.839 30 H 0.108 0.892 31 H 0.266 0.734 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.101 0.899 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.033 0.967 40 H 0.045 0.955 41 H 0.071 0.929 42 H 0.151 0.849 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.439 -11.020 6.486 13.536 hybrid contribution -1.013 -0.409 0.339 1.144 sum 3.427 -11.430 6.825 13.746 Atomic orbital electron populations 1.22114 0.93885 1.04558 1.01675 1.22312 0.96076 0.78452 1.06865 1.46923 1.52786 1.16863 1.07355 1.25873 0.85810 0.88322 0.91095 1.68341 1.21422 1.07182 1.30668 1.21897 0.88229 0.97170 0.87621 1.21185 1.14317 0.95776 0.98115 1.17244 0.79706 0.87662 0.83816 1.90832 1.56582 1.69326 1.29297 1.20628 1.01128 0.97408 0.92564 1.22451 0.97637 0.92042 0.95684 1.62737 1.16206 1.42370 1.01726 1.21482 0.87262 0.96629 0.95948 0.97060 1.22021 1.01975 1.01998 0.94320 1.19616 0.95582 0.95407 0.93768 1.21493 1.45834 0.95496 0.92636 0.92317 1.25765 0.94793 1.02685 0.94949 1.70059 1.50135 1.37268 1.00379 0.85866 0.78263 0.81255 0.78443 1.19538 1.21796 1.17878 1.21864 1.01942 0.86412 0.96361 0.91504 0.87579 0.95240 0.83906 0.89215 0.73355 0.91574 0.90438 0.87599 0.89878 0.92355 0.91191 0.91078 0.96653 0.95507 0.92937 0.84900 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 10.24 71.98 0.74 -2.15 16 2 C 0.08 1.45 6.10 86.38 0.53 1.98 16 3 N -0.52 -14.03 2.57 -655.07 -1.68 -15.71 16 4 C 0.37 9.81 11.48 180.37 2.07 11.88 16 5 N -0.56 -20.30 10.28 -188.07 -1.93 -22.23 16 6 C 0.17 6.65 5.50 41.57 0.23 6.88 16 7 C -0.29 -10.61 5.09 -19.80 -0.10 -10.71 16 8 C 0.51 18.32 7.43 84.96 0.63 18.95 16 9 O -0.58 -22.84 16.06 -5.26 -0.08 -22.92 16 10 C -0.08 -2.56 4.63 29.76 0.14 -2.42 16 11 C 0.05 1.48 5.40 86.23 0.47 1.94 16 12 N -0.51 -18.83 4.88 -875.77 -4.27 -23.10 16 13 C 0.09 3.79 1.57 44.91 0.07 3.86 16 14 H 0.01 0.52 5.96 -2.39 -0.01 0.50 16 15 C -0.15 -4.59 8.17 71.98 0.59 -4.00 16 16 C -0.01 -0.28 3.66 29.85 0.11 -0.17 16 17 C -0.52 -28.36 7.18 25.60 0.18 -28.18 16 18 H 0.06 3.50 5.92 -2.91 -0.02 3.48 16 19 C 0.02 0.89 5.47 84.65 0.46 1.36 16 20 N -0.94 -56.70 13.96 21.44 0.30 -56.41 16 21 Si 0.94 44.14 27.36 68.60 1.88 46.02 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.25 -11.39 6.71 99.48 0.67 -10.72 16 25 C 0.06 2.53 5.30 85.56 0.45 2.98 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.03 0.71 8.14 -2.39 -0.02 0.70 16 29 H 0.14 1.11 8.02 -2.39 -0.02 1.10 16 30 H 0.09 1.77 7.46 -2.38 -0.02 1.75 16 31 H 0.25 3.63 8.03 -2.92 -0.02 3.60 16 32 H 0.07 2.29 5.68 -2.39 -0.01 2.28 16 33 H 0.08 2.44 7.94 -2.38 -0.02 2.42 16 34 H 0.11 2.66 6.68 -2.39 -0.02 2.65 16 35 H 0.08 2.28 8.06 -2.39 -0.02 2.26 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.07 1.93 5.05 -2.39 -0.01 1.92 16 38 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.02 0.72 7.49 -2.39 -0.02 0.70 16 40 H 0.03 1.25 7.26 -2.38 -0.02 1.23 16 41 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 42 H 0.13 6.61 3.96 -2.39 -0.01 6.60 16 43 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 Total: -1.00 -74.22 327.92 1.75 -72.48 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.98 Total: 19.67 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 6.57 Total: 2.21 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -7.59 Total: -117.45 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.08 Total: -22.92 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.02 kcal Total: -74.22 1.75 -72.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569727909.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.100 kcal (2) G-P(sol) polarization free energy of solvation -74.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds