Wall clock time and date at job start Tue Mar 31 2020 07:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00445 * 2 1 4 4 C 1.50700 * 109.47388 * 179.97438 * 3 2 1 5 5 C 1.38122 * 120.39924 * 359.97438 * 4 3 2 6 6 C 1.39625 * 118.33029 * 179.97438 * 5 4 3 7 7 N 1.38544 * 120.52453 * 180.02562 * 6 5 4 8 8 C 1.46842 * 111.00362 * 304.20979 * 7 6 5 9 9 C 1.53036 * 109.52582 * 174.16662 * 8 7 6 10 10 C 1.53118 * 109.28042 * 59.17463 * 9 8 7 11 11 C 1.53000 * 109.52588 * 182.44203 * 10 9 8 12 12 C 1.50704 * 109.47228 * 294.68861 * 11 10 9 13 13 H 1.08002 * 119.99878 * 359.97438 * 12 11 10 14 14 C 1.37869 * 120.00030 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00190 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99860 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47227 * 59.99887 * 16 14 12 18 18 H 1.48506 * 109.46997 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47123 * 299.99239 * 16 14 12 20 20 C 1.53117 * 109.16342 * 302.35189 * 10 9 8 21 21 C 1.46854 * 110.99504 * 180.02562 * 7 6 5 22 22 N 1.32984 * 118.93817 * 0.02562 * 6 5 4 23 23 C 1.31753 * 120.69061 * 359.97438 * 22 6 5 24 24 N 1.31791 * 121.82901 * 0.03237 * 23 22 6 25 25 H 1.09006 * 109.46734 * 60.00064 * 1 2 3 26 26 H 1.08999 * 109.47201 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47073 * 300.00502 * 1 2 3 28 28 H 1.08999 * 109.47348 * 59.99532 * 3 2 1 29 29 H 1.09004 * 109.46576 * 299.99560 * 3 2 1 30 30 H 1.07995 * 120.83076 * 0.25243 * 5 4 3 31 31 H 1.09004 * 109.45892 * 294.17943 * 8 7 6 32 32 H 1.08993 * 109.46148 * 54.14457 * 8 7 6 33 33 H 1.09007 * 109.50042 * 299.24082 * 9 8 7 34 34 H 1.08997 * 109.50601 * 179.12553 * 9 8 7 35 35 H 1.09005 * 109.51712 * 62.25251 * 10 9 8 36 36 H 1.09001 * 109.47022 * 54.68489 * 11 10 9 37 37 H 1.08991 * 109.47476 * 174.68443 * 11 10 9 38 38 H 0.96998 * 120.00219 * 180.02562 * 15 14 12 39 39 H 1.08999 * 109.50181 * 297.71263 * 20 10 9 40 40 H 1.09002 * 109.50252 * 177.59366 * 20 10 9 41 41 H 1.09003 * 109.46451 * 305.85642 * 21 7 6 42 42 H 1.09000 * 109.46184 * 65.82321 * 21 7 6 43 43 H 1.08002 * 119.08495 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.1153 -0.0565 0.0016 6 6 5.5102 -0.1165 0.0016 7 7 6.1620 -1.3390 0.0021 8 6 5.7295 -2.1656 1.1361 9 6 6.3572 -3.5568 1.0238 10 6 7.8826 -3.4242 1.0172 11 6 8.5153 -4.8064 0.8439 12 6 8.2016 -5.6570 2.0476 13 1 7.6104 -5.2521 2.8557 14 6 8.6692 -6.9521 2.1174 15 7 9.3887 -7.4453 1.1332 16 14 8.2797 -8.0067 3.6092 17 1 6.8078 -8.1491 3.7441 18 1 8.8929 -9.3487 3.4404 19 1 8.8285 -7.3611 4.8287 20 6 8.3034 -2.5194 -0.1442 21 6 7.6194 -1.1583 0.0026 22 7 6.2031 1.0186 0.0012 23 6 5.5864 2.1829 0.0003 24 7 4.2715 2.2730 0.0004 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.6887 1.8464 0.8899 29 1 1.6887 1.8462 -0.8901 30 1 3.5223 -0.9591 -0.0021 31 1 6.0470 -1.6981 2.0682 32 1 4.6433 -2.2554 1.1266 33 1 6.0291 -4.0304 0.0984 34 1 6.0484 -4.1651 1.8738 35 1 8.2141 -2.9862 1.9587 36 1 8.1126 -5.2807 -0.0511 37 1 9.5956 -4.7016 0.7446 38 1 9.7174 -8.3566 1.1821 39 1 8.0060 -2.9766 -1.0879 40 1 9.3852 -2.3866 -0.1285 41 1 7.9061 -0.5163 -0.8303 42 1 7.9276 -0.6958 0.9402 43 1 6.1747 3.0887 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571161877.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:20 Heat of formation + Delta-G solvation = -0.519458 kcal Electronic energy + Delta-G solvation = -23042.944507 eV Core-core repulsion = 19702.058772 eV Total energy + Delta-G solvation = -3340.885735 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.31051 -38.92288 -38.12225 -35.16285 -33.52838 -32.55027 -31.04342 -30.60407 -28.52065 -27.58858 -26.27424 -24.49041 -24.06614 -22.37328 -22.14392 -20.73700 -19.07481 -17.82784 -17.54239 -16.39191 -16.37230 -16.18395 -15.57271 -15.28586 -14.98912 -14.67291 -14.47912 -14.30860 -13.83625 -13.55180 -13.04056 -12.98926 -12.78785 -12.52896 -12.12283 -11.80716 -11.65661 -11.28411 -10.97666 -10.92882 -10.84539 -10.74122 -10.58222 -10.38112 -10.17256 -10.02582 -9.73229 -9.61878 -9.31979 -9.10318 -8.90985 -8.35766 -8.32515 -5.98204 -4.00201 0.93008 1.02043 3.03720 3.33292 3.38250 3.40082 3.40581 3.74307 4.16020 4.27138 4.46601 4.67646 4.78775 4.92147 4.97559 5.08280 5.16116 5.18442 5.28084 5.33906 5.36867 5.41776 5.48425 5.53708 5.67735 5.74182 5.83361 6.05496 6.09113 6.19874 6.33384 6.39160 6.60427 6.67017 6.74161 6.96511 7.01706 7.11516 7.19158 7.21338 7.68782 7.84322 8.01820 8.09226 8.44199 9.06092 9.63484 11.13039 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020093 B = 0.003330 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.205528 B = 8406.452621 C = 9450.901314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.386 6.386 3 C 0.115 3.885 4 C 0.179 3.821 5 C -0.221 4.221 6 C 0.364 3.636 7 N -0.468 5.468 8 C 0.061 3.939 9 C -0.102 4.102 10 C -0.084 4.084 11 C 0.029 3.971 12 C -0.517 4.517 13 H 0.054 0.946 14 C 0.057 3.943 15 N -0.896 5.896 16 Si 0.889 3.111 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.117 4.117 21 C 0.069 3.931 22 N -0.560 5.560 23 C 0.322 3.678 24 N -0.549 5.549 25 H 0.044 0.956 26 H 0.091 0.909 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.155 0.845 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.017 0.983 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.049 0.951 43 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.460 18.204 -2.691 23.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C 0.038 3.962 4 C 0.036 3.964 5 C -0.246 4.246 6 C 0.124 3.876 7 N -0.185 5.185 8 C -0.064 4.064 9 C -0.139 4.139 10 C -0.103 4.103 11 C -0.008 4.008 12 C -0.555 4.555 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.155 4.155 21 C -0.057 4.057 22 N -0.281 5.281 23 C 0.032 3.968 24 N -0.268 5.268 25 H 0.062 0.938 26 H 0.110 0.890 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.173 0.827 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.036 0.964 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.067 0.933 43 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -13.826 18.319 -3.161 23.167 hybrid contribution -0.590 -0.793 1.275 1.614 sum -14.416 17.525 -1.886 22.771 Atomic orbital electron populations 1.22788 0.79917 1.03362 1.00207 1.87857 1.20384 1.26628 1.95569 1.20935 0.87666 0.85375 1.02239 1.20940 0.95461 0.88728 0.91276 1.22126 0.94239 1.00713 1.07524 1.20328 0.90352 0.89202 0.87754 1.58804 1.09087 1.09273 1.41292 1.22460 1.00465 0.94871 0.88611 1.21632 0.96286 0.92589 1.03427 1.21294 0.94286 0.98486 0.96214 1.19102 0.95606 0.89012 0.97066 1.21210 1.32831 0.97306 1.04199 0.92731 1.25010 0.95269 0.98054 0.96074 1.69950 1.35993 1.15814 1.31736 0.86713 0.78576 0.79620 0.83406 1.20267 1.21360 1.20336 1.21802 0.99438 0.93682 1.00546 1.22099 0.83237 0.98503 1.01886 1.68425 1.41639 0.98724 1.19327 1.24656 0.87382 0.95049 0.89688 1.67965 1.07581 1.32627 1.18624 0.93751 0.89031 0.93751 0.90488 0.90471 0.82713 0.93711 0.90256 0.91345 0.89904 0.92669 0.96431 0.96599 0.92997 0.91484 0.91329 0.90216 0.93306 0.78782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.78 9.25 -35.23 -0.33 -4.10 16 3 C 0.12 1.06 6.50 36.01 0.23 1.29 16 4 C 0.18 2.18 6.82 -82.33 -0.56 1.62 16 5 C -0.22 -2.97 8.57 -39.11 -0.34 -3.31 16 6 C 0.36 5.40 6.41 -154.78 -0.99 4.41 16 7 N -0.47 -7.28 4.68 -173.05 -0.81 -8.09 16 8 C 0.06 0.93 5.25 -3.84 -0.02 0.91 16 9 C -0.10 -1.83 5.15 -26.65 -0.14 -1.97 16 10 C -0.08 -1.67 2.20 -90.50 -0.20 -1.87 16 11 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 12 C -0.52 -14.17 8.44 -34.44 -0.29 -14.47 16 13 H 0.05 1.44 7.08 -52.49 -0.37 1.07 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 16 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 20 C -0.12 -2.02 5.38 -26.65 -0.14 -2.16 16 21 C 0.07 1.08 4.67 -3.83 -0.02 1.06 16 22 N -0.56 -7.99 8.85 -13.81 -0.12 -8.11 16 23 C 0.32 3.89 12.28 -92.19 -1.13 2.76 16 24 N -0.55 -6.82 10.37 -10.88 -0.11 -6.93 16 25 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.16 2.03 6.28 -52.49 -0.33 1.70 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.08 6.75 -51.93 -0.35 0.73 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.08 1.56 7.05 -51.93 -0.37 1.20 16 35 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.08 1.21 7.73 -51.93 -0.40 0.81 16 42 H 0.05 0.78 8.12 -51.93 -0.42 0.35 16 43 H 0.20 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 346.98 15.07 5.23 5.23 Total: -1.00 -31.21 346.98 -10.00 -41.21 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -6.87 Total: -1.34 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -2.70 Total: -8.28 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.31 Total: -49.12 kcal Atomic # 8 Polarization: -3.78 SS G_CDS: -0.33 Total: -4.10 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.21 -10.00 -41.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571161877.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.690 kcal (2) G-P(sol) polarization free energy of solvation -31.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds