Wall clock time and date at job start Tue Mar 31 2020 07:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00445 * 2 1 4 4 C 1.50700 * 109.47388 * 179.97438 * 3 2 1 5 5 C 1.38122 * 120.39924 * 359.97438 * 4 3 2 6 6 C 1.39625 * 118.33029 * 179.97438 * 5 4 3 7 7 N 1.38544 * 120.52453 * 180.02562 * 6 5 4 8 8 C 1.46842 * 111.00362 * 304.20979 * 7 6 5 9 9 C 1.53036 * 109.52582 * 174.16662 * 8 7 6 10 10 C 1.53118 * 109.28042 * 59.17463 * 9 8 7 11 11 C 1.53000 * 109.52588 * 182.44203 * 10 9 8 12 12 C 1.50704 * 109.47228 * 294.68861 * 11 10 9 13 13 H 1.08002 * 119.99878 * 359.97438 * 12 11 10 14 14 C 1.37869 * 120.00030 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00190 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99860 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47227 * 59.99887 * 16 14 12 18 18 H 1.48506 * 109.46997 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47123 * 299.99239 * 16 14 12 20 20 C 1.53117 * 109.16342 * 302.35189 * 10 9 8 21 21 C 1.46854 * 110.99504 * 180.02562 * 7 6 5 22 22 N 1.32984 * 118.93817 * 0.02562 * 6 5 4 23 23 C 1.31753 * 120.69061 * 359.97438 * 22 6 5 24 24 N 1.31791 * 121.82901 * 0.03237 * 23 22 6 25 25 H 1.09006 * 109.46734 * 60.00064 * 1 2 3 26 26 H 1.08999 * 109.47201 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47073 * 300.00502 * 1 2 3 28 28 H 1.08999 * 109.47348 * 59.99532 * 3 2 1 29 29 H 1.09004 * 109.46576 * 299.99560 * 3 2 1 30 30 H 1.07995 * 120.83076 * 0.25243 * 5 4 3 31 31 H 1.09004 * 109.45892 * 294.17943 * 8 7 6 32 32 H 1.08993 * 109.46148 * 54.14457 * 8 7 6 33 33 H 1.09007 * 109.50042 * 299.24082 * 9 8 7 34 34 H 1.08997 * 109.50601 * 179.12553 * 9 8 7 35 35 H 1.09005 * 109.51712 * 62.25251 * 10 9 8 36 36 H 1.09001 * 109.47022 * 54.68489 * 11 10 9 37 37 H 1.08991 * 109.47476 * 174.68443 * 11 10 9 38 38 H 0.96998 * 120.00219 * 180.02562 * 15 14 12 39 39 H 1.08999 * 109.50181 * 297.71263 * 20 10 9 40 40 H 1.09002 * 109.50252 * 177.59366 * 20 10 9 41 41 H 1.09003 * 109.46451 * 305.85642 * 21 7 6 42 42 H 1.09000 * 109.46184 * 65.82321 * 21 7 6 43 43 H 1.08002 * 119.08495 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.1153 -0.0565 0.0016 6 6 5.5102 -0.1165 0.0016 7 7 6.1620 -1.3390 0.0021 8 6 5.7295 -2.1656 1.1361 9 6 6.3572 -3.5568 1.0238 10 6 7.8826 -3.4242 1.0172 11 6 8.5153 -4.8064 0.8439 12 6 8.2016 -5.6570 2.0476 13 1 7.6104 -5.2521 2.8557 14 6 8.6692 -6.9521 2.1174 15 7 9.3887 -7.4453 1.1332 16 14 8.2797 -8.0067 3.6092 17 1 6.8078 -8.1491 3.7441 18 1 8.8929 -9.3487 3.4404 19 1 8.8285 -7.3611 4.8287 20 6 8.3034 -2.5194 -0.1442 21 6 7.6194 -1.1583 0.0026 22 7 6.2031 1.0186 0.0012 23 6 5.5864 2.1829 0.0003 24 7 4.2715 2.2730 0.0004 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.6887 1.8464 0.8899 29 1 1.6887 1.8462 -0.8901 30 1 3.5223 -0.9591 -0.0021 31 1 6.0470 -1.6981 2.0682 32 1 4.6433 -2.2554 1.1266 33 1 6.0291 -4.0304 0.0984 34 1 6.0484 -4.1651 1.8738 35 1 8.2141 -2.9862 1.9587 36 1 8.1126 -5.2807 -0.0511 37 1 9.5956 -4.7016 0.7446 38 1 9.7174 -8.3566 1.1821 39 1 8.0060 -2.9766 -1.0879 40 1 9.3852 -2.3866 -0.1285 41 1 7.9061 -0.5163 -0.8303 42 1 7.9276 -0.6958 0.9402 43 1 6.1747 3.0887 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571161877.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:20 Heat of formation + Delta-G solvation = -18.663086 kcal Electronic energy + Delta-G solvation = -23043.731274 eV Core-core repulsion = 19702.058772 eV Total energy + Delta-G solvation = -3341.672502 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.32912 -40.14149 -38.83183 -36.64812 -34.79339 -34.19781 -32.34722 -31.90134 -29.73582 -28.89617 -26.90914 -26.13524 -25.18203 -23.67163 -23.45325 -22.15977 -20.59268 -18.90244 -18.51408 -18.31304 -17.07923 -17.03535 -16.57240 -16.53415 -16.28649 -15.89020 -15.65683 -15.39575 -15.12029 -14.98151 -14.65752 -14.25735 -13.78996 -13.56746 -13.49500 -13.26228 -12.98826 -12.76595 -12.55598 -12.37897 -12.28722 -12.17027 -11.96443 -11.71414 -11.65034 -11.30439 -11.05811 -10.94580 -10.76055 -10.52986 -10.50326 -10.31724 -9.48676 -8.15565 -6.25231 -0.01716 -0.00623 1.41516 1.43910 1.51451 2.29071 2.37486 2.43321 2.75658 3.17827 3.21843 3.50692 3.66522 3.89588 3.94390 4.00711 4.08209 4.20731 4.31677 4.36054 4.39022 4.46017 4.51866 4.59466 4.62234 4.64726 4.67962 4.76729 4.86441 4.92558 4.93621 5.05466 5.25407 5.31708 5.35667 5.40299 5.54537 5.59024 5.80570 5.89515 6.01414 6.08161 6.17945 6.30342 6.90939 7.11579 7.43306 8.96181 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020093 B = 0.003330 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.205528 B = 8406.452621 C = 9450.901314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.117 3.883 4 C 0.179 3.821 5 C -0.230 4.230 6 C 0.349 3.651 7 N -0.478 5.478 8 C 0.073 3.927 9 C -0.094 4.094 10 C -0.077 4.077 11 C 0.035 3.965 12 C -0.530 4.530 13 H 0.063 0.937 14 C -0.001 4.001 15 N -0.936 5.936 16 Si 0.959 3.041 17 H -0.265 1.265 18 H -0.287 1.287 19 H -0.268 1.268 20 C -0.109 4.109 21 C 0.082 3.918 22 N -0.577 5.577 23 C 0.320 3.680 24 N -0.551 5.551 25 H 0.056 0.944 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.155 0.845 31 H 0.046 0.954 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.053 0.947 36 H -0.010 1.010 37 H -0.013 1.013 38 H 0.262 0.738 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.048 0.952 43 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.316 19.861 -1.765 25.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C 0.040 3.960 4 C 0.036 3.964 5 C -0.255 4.255 6 C 0.109 3.891 7 N -0.195 5.195 8 C -0.052 4.052 9 C -0.132 4.132 10 C -0.095 4.095 11 C -0.002 4.002 12 C -0.568 4.568 13 H 0.081 0.919 14 C -0.199 4.199 15 N -0.576 5.576 16 Si 0.784 3.216 17 H -0.190 1.190 18 H -0.212 1.212 19 H -0.193 1.193 20 C -0.147 4.147 21 C -0.044 4.044 22 N -0.298 5.298 23 C 0.031 3.969 24 N -0.269 5.269 25 H 0.075 0.925 26 H 0.114 0.886 27 H 0.075 0.925 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.173 0.827 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.009 0.991 37 H 0.006 0.994 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.066 0.934 43 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -15.701 20.002 -2.233 25.526 hybrid contribution -0.045 -1.240 0.945 1.560 sum -15.746 18.761 -1.288 24.527 Atomic orbital electron populations 1.22974 0.78220 1.04157 1.01446 1.87822 1.22263 1.27025 1.95798 1.21029 0.85659 0.85593 1.03681 1.21463 0.97095 0.88180 0.89703 1.22169 0.93651 1.01429 1.08210 1.20365 0.90913 0.89011 0.88795 1.58786 1.08803 1.10249 1.41626 1.22295 1.01235 0.92917 0.88803 1.21476 0.94848 0.94470 1.02439 1.21131 0.95431 0.95793 0.97176 1.18978 0.94007 0.91819 0.95371 1.21635 1.32481 0.97835 1.04893 0.91887 1.25940 0.95097 0.99657 0.99181 1.70096 1.37315 1.16256 1.33982 0.85588 0.78872 0.77529 0.79594 1.19025 1.21233 1.19343 1.21685 0.99892 0.94277 0.98868 1.21906 0.83534 0.96913 1.02066 1.68429 1.42170 0.99157 1.20044 1.25360 0.87717 0.95446 0.88371 1.68087 1.07750 1.32547 1.18565 0.92512 0.88562 0.92484 0.88845 0.88896 0.82715 0.93537 0.88400 0.92365 0.90884 0.92878 0.99145 0.99436 0.92976 0.92301 0.91048 0.89569 0.93378 0.75546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -7.18 9.25 -148.98 -1.38 -8.56 16 3 C 0.12 1.85 6.50 71.24 0.46 2.32 16 4 C 0.18 3.99 6.82 42.42 0.29 4.28 16 5 C -0.23 -5.83 8.57 22.58 0.19 -5.64 16 6 C 0.35 9.89 6.41 133.16 0.85 10.74 16 7 N -0.48 -14.47 4.68 -701.42 -3.28 -17.75 16 8 C 0.07 2.15 5.25 86.33 0.45 2.60 16 9 C -0.09 -3.42 5.15 30.65 0.16 -3.26 16 10 C -0.08 -3.11 2.20 -10.71 -0.02 -3.13 16 11 C 0.04 1.84 4.45 29.85 0.13 1.98 16 12 C -0.53 -29.57 8.44 25.60 0.22 -29.36 16 13 H 0.06 3.33 7.08 -2.91 -0.02 3.31 16 14 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 15 N -0.94 -57.25 13.29 21.44 0.28 -56.96 16 16 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 C -0.11 -3.82 5.38 30.65 0.16 -3.66 16 21 C 0.08 2.51 4.67 86.33 0.40 2.92 16 22 N -0.58 -15.48 8.85 -197.61 -1.75 -17.23 16 23 C 0.32 6.99 12.28 180.90 2.22 9.21 16 24 N -0.55 -12.34 10.37 -188.33 -1.95 -14.30 16 25 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 26 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.16 3.87 6.28 -2.91 -0.02 3.85 16 31 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.10 2.54 6.75 -2.39 -0.02 2.53 16 33 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 34 H 0.07 2.76 7.05 -2.39 -0.02 2.74 16 35 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 36 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 37 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 38 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 39 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.09 2.54 7.73 -2.39 -0.02 2.52 16 42 H 0.05 1.48 8.12 -2.39 -0.02 1.46 16 43 H 0.23 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -67.57 346.98 2.17 -65.40 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.98 Total: 12.36 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: 7.24 Total: -9.09 kcal Atomic # 7 Polarization: -99.53 SS G_CDS: -6.70 Total: -106.23 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -1.38 Total: -8.56 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -67.57 2.17 -65.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571161877.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.741 kcal (2) G-P(sol) polarization free energy of solvation -67.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds