Wall clock time and date at job start Tue Mar 31 2020 06:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46492 * 109.46987 * 2 1 4 4 C 1.34950 * 126.03729 * 125.00406 * 3 2 1 5 5 C 1.35320 * 107.74452 * 180.02562 * 4 3 2 6 6 C 1.50702 * 126.03622 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.46807 * 90.00706 * 6 5 4 8 8 O 1.21282 * 120.00027 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99714 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00005 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.47310 * 270.00108 * 10 9 7 12 12 H 1.07997 * 119.99940 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00037 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99860 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99877 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46889 * 90.00336 * 15 13 11 17 17 H 1.48502 * 109.47240 * 209.99902 * 15 13 11 18 18 H 1.48500 * 109.47486 * 330.00239 * 15 13 11 19 19 C 1.46499 * 120.00337 * 359.97438 * 9 7 6 20 20 C 1.53000 * 109.46840 * 270.00307 * 19 9 7 21 21 C 1.53003 * 117.49371 * 243.61805 * 20 19 9 22 22 C 1.53001 * 117.49608 * 174.99880 * 20 19 9 23 23 C 1.39867 * 107.92136 * 0.26146 * 5 4 3 24 24 N 1.30845 * 108.20224 * 359.55659 * 23 5 4 25 25 H 1.09001 * 109.46753 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46966 * 299.99702 * 1 2 3 27 27 H 1.08990 * 109.47374 * 60.00184 * 1 2 3 28 28 H 1.09003 * 109.46862 * 239.99519 * 2 1 3 29 29 H 1.09000 * 109.47097 * 120.00277 * 2 1 3 30 30 H 1.08002 * 126.12732 * 0.03716 * 4 3 2 31 31 H 1.08992 * 109.47320 * 330.00015 * 6 5 4 32 32 H 1.09002 * 109.46922 * 209.99795 * 6 5 4 33 33 H 1.08998 * 109.46888 * 29.99915 * 10 9 7 34 34 H 1.08994 * 109.47490 * 149.99977 * 10 9 7 35 35 H 0.97000 * 119.99433 * 179.97438 * 14 13 11 36 36 H 1.09002 * 109.47391 * 149.99977 * 19 9 7 37 37 H 1.09001 * 109.46813 * 30.00033 * 19 9 7 38 38 H 1.08995 * 115.55630 * 29.32490 * 20 19 9 39 39 H 1.08998 * 117.50656 * 0.02562 * 21 20 19 40 40 H 1.09001 * 117.49674 * 145.02590 * 21 20 19 41 41 H 1.09003 * 117.49710 * 214.97494 * 22 20 19 42 42 H 1.08998 * 117.50185 * 359.97438 * 22 20 19 43 43 H 1.07997 * 125.89814 * 179.72955 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8731 1.9210 0.8939 5 6 3.0712 3.2137 0.5463 6 6 3.9540 4.2002 1.2665 7 6 5.3458 4.1418 0.6916 8 8 5.5963 3.3744 -0.2135 9 7 6.3121 4.9424 1.1833 10 6 7.6653 4.8853 0.6248 11 6 8.4775 3.8644 1.3793 12 1 8.0305 3.3136 2.1937 13 6 9.7911 3.6337 1.0299 14 7 10.3352 4.3041 0.0379 15 14 10.7981 2.3688 1.9657 16 1 10.6520 1.0412 1.3164 17 1 12.2280 2.7694 1.9568 18 1 10.3148 2.2900 3.3676 19 6 6.0094 5.8698 2.2762 20 6 5.5504 7.2091 1.6962 21 6 6.4220 8.4354 1.9748 22 6 5.0735 8.2790 2.6805 23 6 2.3068 3.4744 -0.5957 24 7 1.6799 2.3749 -0.9276 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.3194 1.4124 1.7357 31 1 3.9880 3.9505 2.3269 32 1 3.5517 5.2057 1.1427 33 1 7.6127 4.6027 -0.4266 34 1 8.1372 5.8636 0.7149 35 1 11.2595 4.1420 -0.2076 36 1 6.9032 6.0229 2.8810 37 1 5.2172 5.4525 2.8979 38 1 5.0502 7.1561 0.7292 39 1 7.3225 8.2879 2.5709 40 1 6.4953 9.1893 1.1910 41 1 4.2597 8.9300 2.3609 42 1 5.0863 8.0285 3.7412 43 1 2.2468 4.4191 -1.1154 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579381630.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:33 Heat of formation + Delta-G solvation = 42.054486 kcal Electronic energy + Delta-G solvation = -23125.751984 eV Core-core repulsion = 19786.712393 eV Total energy + Delta-G solvation = -3339.039590 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.13882 -40.49938 -38.26532 -36.05115 -35.43987 -34.57364 -32.85788 -31.05878 -29.89973 -27.93811 -27.20431 -24.87332 -24.37877 -23.10094 -21.88538 -21.63680 -21.17952 -19.76146 -18.58432 -17.92481 -17.75368 -17.10455 -16.29971 -16.21333 -16.18680 -15.72317 -15.26319 -14.93071 -14.77167 -14.42419 -14.21524 -13.83986 -13.77228 -13.51538 -13.31465 -13.16080 -12.98296 -12.88502 -12.64810 -12.53381 -12.44428 -12.24524 -12.21332 -12.17470 -11.66893 -11.43456 -11.20313 -10.74974 -10.61983 -10.49848 -10.29004 -9.34473 -9.22846 -8.19033 -6.33905 1.01269 1.36910 1.40008 1.49712 1.69273 1.83086 1.99766 2.36982 2.59847 3.05398 3.10348 3.60794 3.85842 3.99913 4.06167 4.09650 4.11293 4.19488 4.25595 4.36370 4.37127 4.49017 4.58244 4.66201 4.76785 4.80949 4.86191 4.90170 4.94878 5.00440 5.11353 5.13971 5.23949 5.25229 5.30151 5.36682 5.40582 5.63051 5.76058 5.93937 6.11676 6.21115 6.75360 6.78849 6.92946 7.32858 7.64346 8.87872 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.011658 B = 0.004687 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.114519 B = 5972.204534 C = 7825.961513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.119 3.881 3 N -0.377 5.377 4 C 0.062 3.938 5 C -0.233 4.233 6 C -0.042 4.042 7 C 0.497 3.503 8 O -0.596 6.596 9 N -0.601 5.601 10 C 0.267 3.733 11 C -0.539 4.539 12 H 0.056 0.944 13 C 0.005 3.995 14 N -0.931 5.931 15 Si 0.967 3.033 16 H -0.282 1.282 17 H -0.277 1.277 18 H -0.258 1.258 19 C 0.141 3.859 20 C -0.182 4.182 21 C -0.195 4.195 22 C -0.141 4.141 23 C 0.047 3.953 24 N -0.330 5.330 25 H 0.099 0.901 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.123 0.877 30 H 0.195 0.805 31 H 0.121 0.879 32 H 0.121 0.879 33 H -0.011 1.011 34 H 0.017 0.983 35 H 0.265 0.735 36 H 0.068 0.932 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.842 -0.005 8.746 20.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.001 4.001 3 N -0.159 5.159 4 C -0.085 4.085 5 C -0.245 4.245 6 C -0.083 4.083 7 C 0.287 3.713 8 O -0.476 6.476 9 N -0.332 5.332 10 C 0.145 3.855 11 C -0.577 4.577 12 H 0.074 0.926 13 C -0.193 4.193 14 N -0.571 5.571 15 Si 0.791 3.209 16 H -0.208 1.208 17 H -0.202 1.202 18 H -0.182 1.182 19 C 0.019 3.981 20 C -0.202 4.202 21 C -0.232 4.232 22 C -0.179 4.179 23 C -0.138 4.138 24 N -0.152 5.152 25 H 0.118 0.882 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.141 0.859 30 H 0.211 0.789 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.007 0.993 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.126 0.874 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -19.408 -1.094 7.357 20.784 hybrid contribution 1.860 -0.099 0.157 1.869 sum -17.548 -1.193 7.514 19.126 Atomic orbital electron populations 1.21977 0.92854 1.03987 1.02344 1.22027 0.96800 0.76173 1.05083 1.48881 1.35715 1.10818 1.20525 1.22722 0.94467 0.94322 0.96966 1.19709 1.06972 0.95902 1.01880 1.19945 0.87515 1.00364 1.00443 1.21518 0.87945 0.79311 0.82554 1.90638 1.83718 1.40583 1.32699 1.48194 1.10248 1.38499 1.36256 1.18604 0.78627 0.95560 0.92724 1.21751 0.96709 1.22276 1.17006 0.92577 1.25881 0.99030 0.98318 0.96109 1.70074 1.14428 1.42949 1.29642 0.85432 0.77720 0.78491 0.79270 1.20819 1.20177 1.18206 1.21262 1.01430 0.87381 0.88057 1.22741 1.05465 0.90789 1.01163 1.23056 0.95702 1.00351 1.04105 1.23022 0.96690 0.99870 0.98287 1.23999 0.95875 0.97911 0.96053 1.77149 1.25936 0.97464 1.14630 0.88207 0.92320 0.93161 0.90155 0.85898 0.78856 0.86127 0.86124 0.99253 0.96471 0.92582 0.91347 0.87358 0.88711 0.89546 0.89138 0.87116 0.87037 0.79272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 10.10 71.98 0.73 -1.55 16 2 C 0.12 2.13 7.23 86.38 0.62 2.75 16 3 N -0.38 -10.20 3.68 -348.06 -1.28 -11.48 16 4 C 0.06 1.69 11.36 83.54 0.95 2.64 16 5 C -0.23 -6.96 4.59 -20.14 -0.09 -7.05 16 6 C -0.04 -1.16 4.74 29.10 0.14 -1.02 16 7 C 0.50 20.63 7.67 87.66 0.67 21.31 16 8 O -0.60 -31.80 15.61 -3.04 -0.05 -31.85 16 9 N -0.60 -25.40 2.46 -826.16 -2.03 -27.43 16 10 C 0.27 14.68 5.16 85.63 0.44 15.12 16 11 C -0.54 -31.34 9.39 25.60 0.24 -31.10 16 12 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 13 C 0.01 0.30 5.46 84.65 0.46 0.76 16 14 N -0.93 -57.49 13.29 21.45 0.28 -57.20 16 15 Si 0.97 45.20 29.54 68.60 2.03 47.22 16 16 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 18 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 19 C 0.14 4.28 5.49 86.38 0.47 4.75 16 20 C -0.18 -4.72 5.94 -10.79 -0.06 -4.79 16 21 C -0.20 -4.87 10.18 30.60 0.31 -4.56 16 22 C -0.14 -2.58 10.25 30.60 0.31 -2.26 16 23 C 0.05 1.45 11.96 85.23 1.02 2.46 16 24 N -0.33 -10.53 12.42 -57.02 -0.71 -11.23 16 25 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.12 1.45 8.07 -2.39 -0.02 1.43 16 30 H 0.19 4.04 8.06 -2.91 -0.02 4.02 16 31 H 0.12 2.57 7.40 -2.39 -0.02 2.55 16 32 H 0.12 2.65 8.03 -2.39 -0.02 2.63 16 33 H -0.01 -0.69 7.42 -2.39 -0.02 -0.71 16 34 H 0.02 0.98 8.07 -2.39 -0.02 0.96 16 35 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.07 2.25 7.81 -2.39 -0.02 2.23 16 37 H 0.11 2.43 6.44 -2.39 -0.02 2.41 16 38 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.09 2.32 8.03 -2.39 -0.02 2.30 16 40 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.19 4.94 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -82.05 366.47 5.44 -76.61 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.98 Total: 17.89 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 6.22 Total: -2.53 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -3.73 Total: -107.35 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.05 Total: -31.85 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -82.05 5.44 -76.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579381630.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.663 kcal (2) G-P(sol) polarization free energy of solvation -82.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds