Wall clock time and date at job start Tue Mar 31 2020 07:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42906 * 109.47030 * 2 1 4 4 C 1.35675 * 117.00248 * 179.97438 * 3 2 1 5 5 C 1.38955 * 120.01846 * 179.72274 * 4 3 2 6 6 N 1.32085 * 120.10227 * 179.73792 * 5 4 3 7 7 C 1.32032 * 120.14727 * 0.56040 * 6 5 4 8 8 C 1.39156 * 120.04058 * 359.69690 * 7 6 5 9 9 N 1.38999 * 120.05261 * 180.02562 * 8 7 6 10 10 C 1.46844 * 111.00041 * 55.76509 * 9 8 7 11 11 C 1.53036 * 109.52398 * 185.83563 * 10 9 8 12 12 C 1.53112 * 109.28311 * 300.82642 * 11 10 9 13 13 C 1.52997 * 109.52801 * 177.55569 * 12 11 10 14 14 C 1.50700 * 109.46811 * 65.31371 * 13 12 11 15 15 H 1.08004 * 120.00676 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00105 * 180.02562 * 14 13 12 17 17 N 1.31521 * 120.00383 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99670 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47103 * 90.00192 * 18 16 14 20 20 H 1.48507 * 109.46968 * 209.99696 * 18 16 14 21 21 H 1.48492 * 109.47229 * 329.99900 * 18 16 14 22 22 C 1.53118 * 109.16420 * 57.64904 * 12 11 10 23 23 C 1.46850 * 110.99710 * 179.97438 * 9 8 7 24 24 N 1.32581 * 120.01957 * 0.02562 * 4 3 2 25 25 H 1.08996 * 109.47279 * 300.00102 * 1 2 3 26 26 H 1.08999 * 109.47266 * 60.00156 * 1 2 3 27 27 H 1.09003 * 109.46579 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47781 * 239.99970 * 2 1 3 29 29 H 1.08999 * 109.47266 * 119.99844 * 2 1 3 30 30 H 1.08000 * 119.94403 * 0.02562 * 5 4 3 31 31 H 1.08006 * 119.98069 * 179.71216 * 7 6 5 32 32 H 1.08994 * 109.46402 * 305.85467 * 10 9 8 33 33 H 1.09005 * 109.46391 * 65.82676 * 10 9 8 34 34 H 1.09001 * 109.50777 * 180.87740 * 11 10 9 35 35 H 1.09007 * 109.49851 * 60.76841 * 11 10 9 36 36 H 1.09005 * 109.52150 * 297.74905 * 12 11 10 37 37 H 1.09003 * 109.47559 * 185.30947 * 13 12 11 38 38 H 1.08997 * 109.46868 * 305.31766 * 13 12 11 39 39 H 0.96998 * 120.00107 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.50383 * 182.40806 * 22 12 11 41 41 H 1.08999 * 109.50024 * 62.28916 * 22 12 11 42 42 H 1.08996 * 109.46694 * 294.17572 * 23 9 8 43 43 H 1.09003 * 109.46281 * 54.14812 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5252 0.0005 5 6 3.8828 2.8091 -0.0052 6 7 5.1920 2.9842 0.0005 7 6 6.0006 1.9404 0.0006 8 6 5.4749 0.6520 0.0010 9 7 6.3260 -0.4470 0.0016 10 6 7.2577 -0.3905 1.1352 11 6 8.2697 -1.5330 1.0230 12 6 7.5239 -2.8702 1.0174 13 6 8.5255 -4.0137 0.8442 14 6 9.4305 -4.0753 2.0476 15 1 9.3038 -3.3697 2.8554 16 6 10.4206 -5.0324 2.1174 17 7 11.2107 -5.0859 3.1674 18 14 10.6404 -6.2523 0.7199 19 1 11.5917 -5.6975 -0.2763 20 1 11.1751 -7.5293 1.2572 21 1 9.3294 -6.4998 0.0681 22 6 6.5256 -2.8842 -0.1435 23 6 5.5642 -1.7025 0.0026 24 7 4.1594 0.4741 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.2243 3.6651 -0.0098 31 1 7.0707 2.0867 0.0006 32 1 7.7846 0.5636 1.1250 33 1 6.7017 -0.4882 2.0676 34 1 8.9515 -1.5001 1.8728 35 1 8.8357 -1.4281 0.0973 36 1 6.9889 -2.9929 1.9592 37 1 7.9873 -4.9565 0.7458 38 1 9.1228 -3.8410 -0.0511 39 1 11.9074 -5.7590 3.2163 40 1 5.9614 -3.8166 -0.1271 41 1 7.0642 -2.8006 -1.0875 42 1 5.0160 -1.7941 0.9403 43 1 4.8610 -1.7013 -0.8303 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579468931.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:36 Heat of formation + Delta-G solvation = 5.963970 kcal Electronic energy + Delta-G solvation = -23243.785763 eV Core-core repulsion = 19903.181171 eV Total energy + Delta-G solvation = -3340.604592 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.57217 -39.36931 -38.32196 -35.23678 -33.66119 -32.51747 -31.88700 -30.77379 -29.87113 -28.15192 -25.34379 -24.46055 -23.36421 -22.74323 -22.27218 -20.72915 -19.21677 -18.66934 -17.91576 -16.89948 -16.72421 -16.68047 -16.25449 -15.09366 -14.73211 -14.41036 -14.30210 -13.95246 -13.70615 -13.36403 -13.15519 -12.98236 -12.87099 -12.72359 -12.24616 -12.20097 -11.94736 -11.65019 -11.48533 -11.36222 -11.17081 -11.01228 -10.85556 -10.65124 -10.31878 -9.87495 -9.72726 -9.55780 -9.39500 -9.29994 -9.06731 -8.55089 -8.14283 -6.05881 -4.03492 0.76060 1.02888 2.63882 3.24871 3.29519 3.37391 3.40615 3.59680 4.06174 4.32880 4.41971 4.43943 4.68386 4.71454 5.00519 5.04395 5.08151 5.17869 5.22028 5.28278 5.33301 5.40020 5.47856 5.49496 5.61356 5.67492 5.70119 5.86389 5.89549 6.03782 6.18156 6.19398 6.41847 6.59205 6.70627 6.80531 6.83553 6.93841 7.05817 7.23876 7.26365 7.41602 7.67527 7.78169 8.51760 8.98537 9.57160 11.07373 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024973 B = 0.003327 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.952688 B = 8414.289107 C = 9137.359429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.064 3.936 3 O -0.301 6.301 4 C 0.306 3.694 5 C -0.008 4.008 6 N -0.384 5.384 7 C -0.009 4.009 8 C 0.320 3.680 9 N -0.466 5.466 10 C 0.059 3.941 11 C -0.103 4.103 12 C -0.076 4.076 13 C -0.008 4.008 14 C -0.517 4.517 15 H 0.073 0.927 16 C 0.066 3.934 17 N -0.904 5.904 18 Si 0.878 3.122 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.266 1.266 22 C -0.119 4.119 23 C 0.069 3.931 24 N -0.539 5.539 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.171 0.829 31 H 0.173 0.827 32 H 0.082 0.918 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.015 0.985 38 H 0.013 0.987 39 H 0.262 0.738 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.048 0.952 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.873 12.250 -7.301 22.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.207 6.207 4 C 0.123 3.877 5 C -0.170 4.170 6 N -0.097 5.097 7 C -0.173 4.173 8 C 0.084 3.916 9 N -0.182 5.182 10 C -0.066 4.066 11 C -0.141 4.141 12 C -0.094 4.094 13 C -0.045 4.045 14 C -0.555 4.555 15 H 0.091 0.909 16 C -0.135 4.135 17 N -0.543 5.543 18 Si 0.706 3.294 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.157 4.157 23 C -0.057 4.057 24 N -0.275 5.275 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.188 0.812 31 H 0.191 0.809 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.034 0.966 38 H 0.031 0.969 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.066 0.934 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.644 12.275 -7.629 22.808 hybrid contribution -0.144 -1.108 -0.148 1.127 sum -17.788 11.168 -7.777 22.397 Atomic orbital electron populations 1.21818 0.92763 1.03067 1.03310 1.22670 0.94923 0.80815 1.02758 1.86260 1.16179 1.30976 1.87260 1.20780 0.84532 0.90915 0.91521 1.22590 0.92025 0.94777 1.07633 1.68337 1.02945 1.32796 1.05659 1.23115 1.01369 0.86967 1.05827 1.20768 0.87157 0.92726 0.90900 1.59094 1.16285 1.01441 1.41422 1.22497 0.93697 1.01645 0.88770 1.21643 0.96541 0.92097 1.03790 1.21105 0.95850 0.95928 0.96534 1.19598 0.94261 0.93236 0.97424 1.21137 1.14183 1.16269 1.03870 0.90925 1.25032 0.95587 0.97329 0.95570 1.69914 1.19939 1.35423 1.29068 0.86803 0.78782 0.80975 0.82860 1.20330 1.21520 1.19067 1.21832 0.97338 0.96012 1.00518 1.22054 0.95070 0.86907 1.01699 1.68002 1.04691 1.33463 1.21338 0.91585 0.91608 0.90154 0.91478 0.91454 0.81157 0.80949 0.90003 0.93505 0.89298 0.91315 0.92060 0.96638 0.96894 0.92788 0.91377 0.91421 0.93384 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.62 16 2 C 0.06 0.59 6.04 37.16 0.22 0.81 16 3 O -0.30 -3.35 10.13 -18.73 -0.19 -3.54 16 4 C 0.31 3.80 7.49 -16.96 -0.13 3.67 16 5 C -0.01 -0.09 11.16 -17.18 -0.19 -0.28 16 6 N -0.38 -4.88 10.48 -12.74 -0.13 -5.01 16 7 C -0.01 -0.11 10.33 -17.13 -0.18 -0.29 16 8 C 0.32 4.34 6.40 -154.72 -0.99 3.35 16 9 N -0.47 -6.50 4.68 -173.13 -0.81 -7.31 16 10 C 0.06 0.81 5.25 -3.84 -0.02 0.79 16 11 C -0.10 -1.73 5.15 -26.65 -0.14 -1.86 16 12 C -0.08 -1.39 2.20 -90.50 -0.20 -1.58 16 13 C -0.01 -0.18 3.52 -27.88 -0.10 -0.28 16 14 C -0.52 -14.03 9.00 -34.44 -0.31 -14.34 16 15 H 0.07 2.10 7.33 -52.48 -0.38 1.72 16 16 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 17 N -0.90 -27.37 13.96 55.43 0.77 -26.59 16 18 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 22 C -0.12 -1.84 5.38 -26.65 -0.14 -1.98 16 23 C 0.07 0.97 4.66 -3.83 -0.02 0.95 16 24 N -0.54 -7.28 7.76 -12.31 -0.10 -7.37 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 29 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 30 H 0.17 1.51 8.06 -52.49 -0.42 1.08 16 31 H 0.17 1.85 7.14 -52.48 -0.37 1.47 16 32 H 0.08 0.97 6.69 -51.93 -0.35 0.62 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.09 1.65 7.05 -51.93 -0.37 1.28 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.02 0.36 7.20 -51.93 -0.37 -0.02 16 38 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 43 H 0.08 1.06 7.72 -51.93 -0.40 0.66 16 LS Contribution 344.09 15.07 5.19 5.19 Total: -1.00 -30.34 344.09 -8.72 -39.05 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -6.88 Total: -1.24 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -1.90 Total: -9.87 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: -0.27 Total: -46.29 kcal Atomic # 8 Polarization: -3.35 SS G_CDS: -0.19 Total: -3.54 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.34 -8.72 -39.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579468931.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.017 kcal (2) G-P(sol) polarization free energy of solvation -30.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds