Wall clock time and date at job start Tue Mar 31 2020 07:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42906 * 109.47030 * 2 1 4 4 C 1.35675 * 117.00248 * 179.97438 * 3 2 1 5 5 C 1.38955 * 120.01846 * 179.72274 * 4 3 2 6 6 N 1.32085 * 120.10227 * 179.73792 * 5 4 3 7 7 C 1.32032 * 120.14727 * 0.56040 * 6 5 4 8 8 C 1.39156 * 120.04058 * 359.69690 * 7 6 5 9 9 N 1.38999 * 120.05261 * 180.02562 * 8 7 6 10 10 C 1.46844 * 111.00041 * 55.76509 * 9 8 7 11 11 C 1.53036 * 109.52398 * 185.83563 * 10 9 8 12 12 C 1.53112 * 109.28311 * 300.82642 * 11 10 9 13 13 C 1.52997 * 109.52801 * 177.55569 * 12 11 10 14 14 C 1.50700 * 109.46811 * 65.31371 * 13 12 11 15 15 H 1.08004 * 120.00676 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00105 * 180.02562 * 14 13 12 17 17 N 1.31521 * 120.00383 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99670 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47103 * 90.00192 * 18 16 14 20 20 H 1.48507 * 109.46968 * 209.99696 * 18 16 14 21 21 H 1.48492 * 109.47229 * 329.99900 * 18 16 14 22 22 C 1.53118 * 109.16420 * 57.64904 * 12 11 10 23 23 C 1.46850 * 110.99710 * 179.97438 * 9 8 7 24 24 N 1.32581 * 120.01957 * 0.02562 * 4 3 2 25 25 H 1.08996 * 109.47279 * 300.00102 * 1 2 3 26 26 H 1.08999 * 109.47266 * 60.00156 * 1 2 3 27 27 H 1.09003 * 109.46579 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47781 * 239.99970 * 2 1 3 29 29 H 1.08999 * 109.47266 * 119.99844 * 2 1 3 30 30 H 1.08000 * 119.94403 * 0.02562 * 5 4 3 31 31 H 1.08006 * 119.98069 * 179.71216 * 7 6 5 32 32 H 1.08994 * 109.46402 * 305.85467 * 10 9 8 33 33 H 1.09005 * 109.46391 * 65.82676 * 10 9 8 34 34 H 1.09001 * 109.50777 * 180.87740 * 11 10 9 35 35 H 1.09007 * 109.49851 * 60.76841 * 11 10 9 36 36 H 1.09005 * 109.52150 * 297.74905 * 12 11 10 37 37 H 1.09003 * 109.47559 * 185.30947 * 13 12 11 38 38 H 1.08997 * 109.46868 * 305.31766 * 13 12 11 39 39 H 0.96998 * 120.00107 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.50383 * 182.40806 * 22 12 11 41 41 H 1.08999 * 109.50024 * 62.28916 * 22 12 11 42 42 H 1.08996 * 109.46694 * 294.17572 * 23 9 8 43 43 H 1.09003 * 109.46281 * 54.14812 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5252 0.0005 5 6 3.8828 2.8091 -0.0052 6 7 5.1920 2.9842 0.0005 7 6 6.0006 1.9404 0.0006 8 6 5.4749 0.6520 0.0010 9 7 6.3260 -0.4470 0.0016 10 6 7.2577 -0.3905 1.1352 11 6 8.2697 -1.5330 1.0230 12 6 7.5239 -2.8702 1.0174 13 6 8.5255 -4.0137 0.8442 14 6 9.4305 -4.0753 2.0476 15 1 9.3038 -3.3697 2.8554 16 6 10.4206 -5.0324 2.1174 17 7 11.2107 -5.0859 3.1674 18 14 10.6404 -6.2523 0.7199 19 1 11.5917 -5.6975 -0.2763 20 1 11.1751 -7.5293 1.2572 21 1 9.3294 -6.4998 0.0681 22 6 6.5256 -2.8842 -0.1435 23 6 5.5642 -1.7025 0.0026 24 7 4.1594 0.4741 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.2243 3.6651 -0.0098 31 1 7.0707 2.0867 0.0006 32 1 7.7846 0.5636 1.1250 33 1 6.7017 -0.4882 2.0676 34 1 8.9515 -1.5001 1.8728 35 1 8.8357 -1.4281 0.0973 36 1 6.9889 -2.9929 1.9592 37 1 7.9873 -4.9565 0.7458 38 1 9.1228 -3.8410 -0.0511 39 1 11.9074 -5.7590 3.2163 40 1 5.9614 -3.8166 -0.1271 41 1 7.0642 -2.8006 -1.0875 42 1 5.0160 -1.7941 0.9403 43 1 4.8610 -1.7013 -0.8303 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579468931.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:36 Heat of formation + Delta-G solvation = -13.832231 kcal Electronic energy + Delta-G solvation = -23244.644191 eV Core-core repulsion = 19903.181171 eV Total energy + Delta-G solvation = -3341.463020 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.53939 -40.42190 -39.31363 -36.60670 -34.88498 -34.18961 -32.78245 -32.02181 -31.04894 -29.61819 -26.51145 -25.69817 -24.46926 -23.87225 -23.25402 -22.25902 -20.62564 -19.58395 -19.05820 -18.65063 -17.79993 -17.53378 -17.30258 -16.35645 -16.10923 -15.72754 -15.34153 -15.15596 -15.05160 -14.80715 -14.46588 -14.01005 -13.80938 -13.67490 -13.53773 -13.47186 -13.19746 -12.84549 -12.78734 -12.50581 -12.36534 -12.24307 -12.14596 -11.94224 -11.85569 -11.66194 -11.33529 -11.03919 -10.89037 -10.71402 -10.47423 -10.35828 -9.13862 -8.24687 -6.26706 -0.19754 0.06524 1.37670 1.39157 1.50473 1.80868 2.22930 2.39048 2.63626 3.10289 3.11139 3.42969 3.47998 3.87170 3.90009 3.96790 4.03213 4.06244 4.18962 4.29910 4.37496 4.38520 4.40479 4.52202 4.62569 4.71610 4.75944 4.85107 4.89648 4.92222 5.00088 5.10695 5.19026 5.20254 5.24616 5.37912 5.44542 5.59798 5.68049 5.73999 5.80665 6.08946 6.26846 6.34982 6.72103 6.80987 7.37324 8.91769 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024973 B = 0.003327 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.952688 B = 8414.289107 C = 9137.359429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.060 3.940 3 O -0.302 6.302 4 C 0.296 3.704 5 C 0.000 4.000 6 N -0.396 5.396 7 C -0.009 4.009 8 C 0.304 3.696 9 N -0.468 5.468 10 C 0.069 3.931 11 C -0.097 4.097 12 C -0.073 4.073 13 C -0.005 4.005 14 C -0.517 4.517 15 H 0.037 0.963 16 C 0.002 3.998 17 N -0.954 5.954 18 Si 0.945 3.055 19 H -0.268 1.268 20 H -0.289 1.289 21 H -0.247 1.247 22 C -0.109 4.109 23 C 0.079 3.921 24 N -0.548 5.548 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.096 0.904 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.198 0.802 31 H 0.189 0.811 32 H 0.105 0.895 33 H 0.041 0.959 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.047 0.953 37 H 0.016 0.984 38 H 0.018 0.982 39 H 0.264 0.736 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.042 0.958 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.567 12.825 -9.262 25.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.015 4.015 3 O -0.208 6.208 4 C 0.113 3.887 5 C -0.163 4.163 6 N -0.109 5.109 7 C -0.172 4.172 8 C 0.070 3.930 9 N -0.185 5.185 10 C -0.056 4.056 11 C -0.135 4.135 12 C -0.092 4.092 13 C -0.042 4.042 14 C -0.555 4.555 15 H 0.056 0.944 16 C -0.194 4.194 17 N -0.595 5.595 18 Si 0.769 3.231 19 H -0.194 1.194 20 H -0.215 1.215 21 H -0.171 1.171 22 C -0.147 4.147 23 C -0.048 4.048 24 N -0.284 5.284 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.115 0.885 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.215 0.785 31 H 0.206 0.794 32 H 0.123 0.877 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.036 0.964 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.362 12.865 -9.603 25.151 hybrid contribution 0.303 -1.199 0.541 1.349 sum -19.059 11.666 -9.062 24.114 Atomic orbital electron populations 1.21824 0.90581 1.04264 1.03646 1.22832 0.96601 0.79932 1.02129 1.86273 1.15433 1.32024 1.87059 1.20985 0.84983 0.91045 0.91726 1.23060 0.92058 0.95413 1.05737 1.68408 1.03474 1.32821 1.06224 1.23359 1.02199 0.86558 1.05097 1.20779 0.87237 0.92799 0.92169 1.59093 1.16501 1.01549 1.41354 1.22345 0.93162 1.01353 0.88769 1.21488 0.96809 0.92631 1.02600 1.21013 0.95641 0.95188 0.97375 1.19555 0.94397 0.95004 0.95291 1.21473 1.14662 1.14950 1.04446 0.94431 1.25967 0.95444 0.99674 0.98293 1.70070 1.21105 1.36773 1.31563 0.85734 0.79636 0.78155 0.79571 1.19365 1.21494 1.17053 1.21715 0.96815 0.97262 0.98909 1.21919 0.94649 0.86529 1.01696 1.67941 1.04849 1.34280 1.21359 0.91346 0.91130 0.88532 0.91887 0.92288 0.78537 0.79422 0.87706 0.94100 0.91959 0.91205 0.93439 0.96571 0.96358 0.92760 0.90433 0.91088 0.93994 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.28 71.98 0.74 -0.88 16 2 C 0.06 1.03 6.04 71.98 0.43 1.46 16 3 O -0.30 -6.21 10.13 -89.92 -0.91 -7.12 16 4 C 0.30 6.84 7.49 84.75 0.63 7.48 16 5 C 0.00 0.00 11.16 84.83 0.95 0.94 16 6 N -0.40 -9.24 10.48 -194.23 -2.04 -11.28 16 7 C -0.01 -0.21 10.33 84.88 0.88 0.67 16 8 C 0.30 7.78 6.40 132.97 0.85 8.63 16 9 N -0.47 -12.35 4.68 -701.65 -3.29 -15.63 16 10 C 0.07 1.84 5.25 86.33 0.45 2.29 16 11 C -0.10 -3.27 5.15 30.64 0.16 -3.11 16 12 C -0.07 -2.68 2.20 -10.72 -0.02 -2.70 16 13 C -0.01 -0.23 3.52 29.85 0.11 -0.12 16 14 C -0.52 -28.76 9.00 25.60 0.23 -28.53 16 15 H 0.04 2.29 7.33 -2.91 -0.02 2.27 16 16 C 0.00 0.14 5.47 84.65 0.46 0.60 16 17 N -0.95 -59.36 13.96 21.45 0.30 -59.06 16 18 Si 0.94 43.87 27.47 68.60 1.88 45.76 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 21 H -0.25 -10.62 6.54 99.48 0.65 -9.96 16 22 C -0.11 -3.19 5.38 30.65 0.16 -3.02 16 23 C 0.08 2.09 4.66 86.33 0.40 2.50 16 24 N -0.55 -13.99 7.76 -305.57 -2.37 -16.36 16 25 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 1.12 8.11 -2.39 -0.02 1.10 16 29 H 0.06 1.10 8.11 -2.39 -0.02 1.08 16 30 H 0.20 2.92 8.06 -2.91 -0.02 2.89 16 31 H 0.19 3.61 7.14 -2.91 -0.02 3.59 16 32 H 0.10 2.32 6.69 -2.39 -0.02 2.31 16 33 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.06 2.40 7.05 -2.39 -0.02 2.38 16 35 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 36 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.02 0.72 7.20 -2.39 -0.02 0.70 16 38 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 39 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 40 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.04 1.17 8.12 -2.39 -0.02 1.15 16 43 H 0.09 2.17 7.72 -2.39 -0.02 2.15 16 Total: -1.00 -65.76 344.09 0.95 -64.81 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.93 Total: 12.68 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: 6.44 Total: -13.80 kcal Atomic # 7 Polarization: -94.94 SS G_CDS: -7.39 Total: -102.33 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.91 Total: -7.12 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.76 kcal Total: -65.76 0.95 -64.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579468931.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.981 kcal (2) G-P(sol) polarization free energy of solvation -65.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds