Wall clock time and date at job start Tue Mar 31 2020 07:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46905 * 110.99704 * 2 1 4 4 C 1.46896 * 111.00031 * 123.95214 * 2 1 3 5 5 H 1.09007 * 109.47127 * 179.68563 * 4 2 1 6 6 C 1.53003 * 109.47362 * 59.68245 * 4 2 1 7 7 N 1.46906 * 109.46736 * 56.11087 * 6 4 2 8 8 C 1.46900 * 110.99682 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.46751 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.47364 * 304.99669 * 9 8 7 11 11 C 1.47189 * 109.47326 * 65.00265 * 9 8 7 12 12 N 5.99215 * 119.75880 * 200.74134 * 2 1 3 13 13 C 1.53002 * 109.46974 * 185.00211 * 9 8 7 14 14 C 1.50691 * 109.47412 * 174.99963 * 13 9 8 15 15 H 1.08003 * 120.00092 * 359.97438 * 14 13 9 16 16 C 1.37879 * 120.00424 * 179.72328 * 14 13 9 17 17 N 1.31513 * 119.99518 * 0.27702 * 16 14 13 18 18 Si 1.86796 * 120.00340 * 180.27421 * 16 14 13 19 19 H 1.48499 * 109.47203 * 59.99713 * 18 16 14 20 20 H 1.48497 * 109.47599 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47346 * 300.00034 * 18 16 14 22 22 C 1.50697 * 109.47355 * 299.68317 * 4 2 1 23 23 C 1.34518 * 125.78910 * 229.15322 * 22 4 2 24 24 C 1.41391 * 106.83901 * 179.89034 * 23 22 4 25 25 C 1.34509 * 106.83805 * 0.36579 * 24 23 22 26 26 O 1.34300 * 108.42358 * 359.77861 * 25 24 23 27 27 H 1.09000 * 109.47295 * 304.97413 * 1 2 3 28 28 H 1.08996 * 109.47261 * 64.97937 * 1 2 3 29 29 H 1.09004 * 109.46376 * 184.97746 * 1 2 3 30 30 H 1.08994 * 109.46835 * 184.13626 * 3 2 1 31 31 H 1.08998 * 109.46892 * 304.13496 * 3 2 1 32 32 H 1.08996 * 109.46985 * 64.13387 * 3 2 1 33 33 H 1.08996 * 109.47032 * 296.11163 * 6 4 2 34 34 H 1.08996 * 109.47071 * 176.10904 * 6 4 2 35 35 H 1.00903 * 110.99907 * 56.04966 * 7 6 4 36 36 H 1.08996 * 109.47050 * 60.00003 * 8 7 6 37 37 H 1.08997 * 109.47057 * 299.99848 * 8 7 6 38 38 H 1.09000 * 109.47198 * 54.99671 * 13 9 8 39 39 H 1.09001 * 109.46931 * 294.99865 * 13 9 8 40 40 H 0.97001 * 119.99742 * 180.02562 * 17 16 14 41 41 H 1.08000 * 126.57977 * 0.02562 * 23 22 4 42 42 H 1.07993 * 126.57781 * 180.16591 * 24 23 22 43 43 H 1.08005 * 125.78938 * 179.74715 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 3.0851 -0.7544 1.1103 6 6 1.4985 -2.2105 1.0536 7 7 1.8838 -2.7863 -0.2419 8 6 1.4216 -4.1758 -0.3586 9 6 1.8412 -4.7403 -1.7174 10 1 1.4708 -4.0909 -2.5107 11 6 3.3097 -4.8112 -1.7870 12 7 4.4432 -4.8648 -1.8423 13 6 1.2541 -6.1425 -1.8904 14 6 1.5636 -6.6493 -3.2754 15 1 2.1227 -6.0328 -3.9637 16 6 1.1374 -7.9022 -3.6623 17 7 0.4561 -8.6528 -2.8244 18 14 1.5276 -8.5335 -5.3765 19 1 3.0001 -8.5820 -5.5629 20 1 0.9631 -9.8969 -5.5425 21 1 0.9306 -7.6237 -6.3870 22 6 1.5187 -0.1448 2.4251 23 6 2.2904 0.1633 3.4830 24 6 1.4382 0.7236 4.4623 25 6 0.1956 0.7169 3.9474 26 8 0.2503 0.1897 2.7134 27 1 -0.3634 0.5891 0.8421 28 1 -0.3633 0.4346 -0.9312 29 1 -0.3632 -1.0239 0.0892 30 1 3.0825 1.3434 -0.0741 31 1 1.5872 1.9173 -0.8506 32 1 1.7071 1.8713 0.9247 33 1 0.4129 -2.2275 1.1503 34 1 1.9441 -2.7954 1.8581 35 1 2.8809 -2.7234 -0.3833 36 1 0.3356 -4.2060 -0.2719 37 1 1.8664 -4.7746 0.4361 38 1 0.1738 -6.1039 -1.7506 39 1 1.6924 -6.8136 -1.1517 40 1 0.1566 -9.5344 -3.0965 41 1 3.3567 0.0137 3.5672 42 1 1.7288 1.0845 5.4378 43 1 -0.6952 1.0742 4.4426 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581243763.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:17 Heat of formation + Delta-G solvation = 47.072852 kcal Electronic energy + Delta-G solvation = -22882.730742 eV Core-core repulsion = 19543.908764 eV Total energy + Delta-G solvation = -3338.821977 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.88123 -38.44679 -37.02687 -34.90497 -33.54544 -33.27766 -31.86160 -30.59541 -28.17580 -27.49126 -26.08130 -23.88019 -22.69243 -22.02567 -21.85533 -21.55469 -20.11181 -17.56517 -16.75637 -16.67227 -16.40016 -15.98808 -15.42804 -15.28683 -14.66003 -14.51635 -14.11508 -13.78319 -13.36363 -13.14042 -13.07575 -12.87898 -12.83013 -12.46116 -12.27377 -12.16428 -12.03112 -11.89074 -11.68928 -11.44244 -11.21433 -11.05961 -10.97422 -10.68600 -10.53501 -10.21464 -10.14628 -9.52014 -9.22017 -8.75985 -8.43693 -8.42455 -8.20176 -6.06910 -4.09798 1.48002 2.36867 2.72682 3.33513 3.37425 3.41303 3.61444 3.67336 3.85402 4.12275 4.43268 4.61647 4.69580 4.78230 4.85291 4.90016 5.08234 5.12337 5.31084 5.31319 5.43281 5.48338 5.55231 5.58146 5.62173 5.64096 5.74288 5.76118 5.79248 5.90084 6.11225 6.20032 6.23530 6.40643 6.59405 6.76497 6.90330 6.98440 7.16167 7.46479 7.51383 7.56974 7.88349 8.26387 8.45023 8.94707 9.55450 11.04007 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.027624 B = 0.002889 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.354253 B = 9688.365861 C = 9804.768378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.509 5.509 3 C 0.022 3.978 4 C 0.166 3.834 5 H 0.108 0.892 6 C 0.065 3.935 7 N -0.672 5.672 8 C 0.068 3.932 9 C 0.008 3.992 10 H 0.112 0.888 11 C 0.243 3.757 12 N -0.479 5.479 13 C 0.033 3.967 14 C -0.526 4.526 15 H 0.056 0.944 16 C 0.062 3.938 17 N -0.893 5.893 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.035 4.035 23 C -0.208 4.208 24 C -0.214 4.214 25 C -0.049 4.049 26 O -0.165 6.165 27 H 0.035 0.965 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.023 0.977 33 H 0.081 0.919 34 H 0.037 0.963 35 H 0.339 0.661 36 H 0.090 0.910 37 H 0.032 0.968 38 H 0.039 0.961 39 H 0.023 0.977 40 H 0.263 0.737 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.130 20.562 13.619 24.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.231 5.231 3 C -0.126 4.126 4 C 0.056 3.944 5 H 0.125 0.875 6 C -0.064 4.064 7 N -0.303 5.303 8 C -0.062 4.062 9 C -0.014 4.014 10 H 0.130 0.870 11 C -0.074 4.074 12 N -0.156 5.156 13 C -0.006 4.006 14 C -0.564 4.564 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.087 4.087 23 C -0.228 4.228 24 C -0.233 4.233 25 C -0.117 4.117 26 O -0.061 6.061 27 H 0.053 0.947 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.041 0.959 33 H 0.099 0.901 34 H 0.055 0.945 35 H 0.157 0.843 36 H 0.108 0.892 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.042 0.958 40 H 0.072 0.928 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -1.144 20.290 12.548 23.884 hybrid contribution 0.279 -0.411 0.772 0.918 sum -0.865 19.879 13.320 23.945 Atomic orbital electron populations 1.22587 0.86557 1.03008 1.00690 1.62078 1.08889 1.12973 1.39110 1.22421 1.00719 0.89069 1.00377 1.20648 0.99655 0.93244 0.80871 0.87456 1.22019 1.01594 0.91774 0.91055 1.60417 1.20305 1.18877 1.30685 1.22083 1.01483 0.86788 0.95855 1.19312 0.81520 1.02782 0.97782 0.86989 1.29320 0.95212 0.91006 0.91822 1.81032 1.13577 1.11045 1.09926 1.19153 0.96829 0.86821 0.97782 1.21120 1.35629 1.01172 0.98481 0.92532 1.24951 0.94912 0.96759 0.97357 1.69930 1.37321 1.10551 1.35322 0.86655 0.78758 0.77973 0.84700 1.20293 1.21231 1.19992 1.23671 0.81785 1.03925 0.99358 1.21671 1.00984 1.06121 0.94025 1.21814 0.93217 1.06698 1.01591 1.24117 1.00021 1.03067 0.84485 1.84212 1.29342 1.61747 1.30766 0.94695 0.91431 0.90353 0.91461 0.91165 0.95858 0.90081 0.94514 0.84297 0.89187 0.94947 0.94246 0.95831 0.92777 0.83657 0.83669 0.78377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 8.73 60.07 0.52 0.73 16 2 N -0.51 -5.51 4.77 -244.58 -1.17 -6.67 16 3 C 0.02 0.21 9.35 60.07 0.56 0.77 16 4 C 0.17 1.72 2.48 -68.87 -0.17 1.55 16 5 H 0.11 1.05 8.11 -51.92 -0.42 0.63 16 6 C 0.07 0.73 4.69 -3.82 -0.02 0.72 16 7 N -0.67 -8.76 6.25 -113.78 -0.71 -9.48 16 8 C 0.07 1.00 5.12 -3.82 -0.02 0.98 16 9 C 0.01 0.15 2.42 -93.41 -0.23 -0.08 16 10 H 0.11 2.00 8.14 -51.93 -0.42 1.58 16 11 C 0.24 4.91 12.98 -20.76 -0.27 4.64 16 12 N -0.48 -10.44 18.54 42.16 0.78 -9.66 16 13 C 0.03 0.76 4.42 -27.89 -0.12 0.64 16 14 C -0.53 -14.07 8.60 -34.44 -0.30 -14.37 16 15 H 0.06 1.51 7.59 -52.48 -0.40 1.11 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 18 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 22 C -0.03 -0.36 4.56 -35.62 -0.16 -0.52 16 23 C -0.21 -2.03 10.79 -39.70 -0.43 -2.45 16 24 C -0.21 -1.87 10.91 -39.70 -0.43 -2.30 16 25 C -0.05 -0.41 12.09 29.41 0.36 -0.06 16 26 O -0.16 -1.72 7.85 5.72 0.04 -1.67 16 27 H 0.03 0.36 5.67 -51.93 -0.29 0.07 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.87 5.94 -51.93 -0.31 0.57 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.02 0.22 7.20 -51.93 -0.37 -0.15 16 33 H 0.08 0.93 6.42 -51.93 -0.33 0.60 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.34 4.61 7.81 -39.29 -0.31 4.31 16 36 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.15 1.22 8.06 -52.49 -0.42 0.79 16 42 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.20 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 358.62 15.07 5.40 5.40 Total: -1.00 -30.54 358.62 -7.38 -37.91 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.64 Total: 0.81 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -0.80 Total: -8.14 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: -0.36 Total: -50.75 kcal Atomic # 8 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.54 -7.38 -37.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581243763.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.986 kcal (2) G-P(sol) polarization free energy of solvation -30.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds