Wall clock time and date at job start Tue Mar 31 2020 07:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46905 * 110.99704 * 2 1 4 4 C 1.46896 * 111.00031 * 123.95214 * 2 1 3 5 5 H 1.09007 * 109.47127 * 179.68563 * 4 2 1 6 6 C 1.53003 * 109.47362 * 59.68245 * 4 2 1 7 7 N 1.46906 * 109.46736 * 56.11087 * 6 4 2 8 8 C 1.46900 * 110.99682 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.46751 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.47364 * 304.99669 * 9 8 7 11 11 C 1.47189 * 109.47326 * 65.00265 * 9 8 7 12 12 N 5.99215 * 119.75880 * 200.74134 * 2 1 3 13 13 C 1.53002 * 109.46974 * 185.00211 * 9 8 7 14 14 C 1.50691 * 109.47412 * 174.99963 * 13 9 8 15 15 H 1.08003 * 120.00092 * 359.97438 * 14 13 9 16 16 C 1.37879 * 120.00424 * 179.72328 * 14 13 9 17 17 N 1.31513 * 119.99518 * 0.27702 * 16 14 13 18 18 Si 1.86796 * 120.00340 * 180.27421 * 16 14 13 19 19 H 1.48499 * 109.47203 * 59.99713 * 18 16 14 20 20 H 1.48497 * 109.47599 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47346 * 300.00034 * 18 16 14 22 22 C 1.50697 * 109.47355 * 299.68317 * 4 2 1 23 23 C 1.34518 * 125.78910 * 229.15322 * 22 4 2 24 24 C 1.41391 * 106.83901 * 179.89034 * 23 22 4 25 25 C 1.34509 * 106.83805 * 0.36579 * 24 23 22 26 26 O 1.34300 * 108.42358 * 359.77861 * 25 24 23 27 27 H 1.09000 * 109.47295 * 304.97413 * 1 2 3 28 28 H 1.08996 * 109.47261 * 64.97937 * 1 2 3 29 29 H 1.09004 * 109.46376 * 184.97746 * 1 2 3 30 30 H 1.08994 * 109.46835 * 184.13626 * 3 2 1 31 31 H 1.08998 * 109.46892 * 304.13496 * 3 2 1 32 32 H 1.08996 * 109.46985 * 64.13387 * 3 2 1 33 33 H 1.08996 * 109.47032 * 296.11163 * 6 4 2 34 34 H 1.08996 * 109.47071 * 176.10904 * 6 4 2 35 35 H 1.00903 * 110.99907 * 56.04966 * 7 6 4 36 36 H 1.08996 * 109.47050 * 60.00003 * 8 7 6 37 37 H 1.08997 * 109.47057 * 299.99848 * 8 7 6 38 38 H 1.09000 * 109.47198 * 54.99671 * 13 9 8 39 39 H 1.09001 * 109.46931 * 294.99865 * 13 9 8 40 40 H 0.97001 * 119.99742 * 180.02562 * 17 16 14 41 41 H 1.08000 * 126.57977 * 0.02562 * 23 22 4 42 42 H 1.07993 * 126.57781 * 180.16591 * 24 23 22 43 43 H 1.08005 * 125.78938 * 179.74715 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 3.0851 -0.7544 1.1103 6 6 1.4985 -2.2105 1.0536 7 7 1.8838 -2.7863 -0.2419 8 6 1.4216 -4.1758 -0.3586 9 6 1.8412 -4.7403 -1.7174 10 1 1.4708 -4.0909 -2.5107 11 6 3.3097 -4.8112 -1.7870 12 7 4.4432 -4.8648 -1.8423 13 6 1.2541 -6.1425 -1.8904 14 6 1.5636 -6.6493 -3.2754 15 1 2.1227 -6.0328 -3.9637 16 6 1.1374 -7.9022 -3.6623 17 7 0.4561 -8.6528 -2.8244 18 14 1.5276 -8.5335 -5.3765 19 1 3.0001 -8.5820 -5.5629 20 1 0.9631 -9.8969 -5.5425 21 1 0.9306 -7.6237 -6.3870 22 6 1.5187 -0.1448 2.4251 23 6 2.2904 0.1633 3.4830 24 6 1.4382 0.7236 4.4623 25 6 0.1956 0.7169 3.9474 26 8 0.2503 0.1897 2.7134 27 1 -0.3634 0.5891 0.8421 28 1 -0.3633 0.4346 -0.9312 29 1 -0.3632 -1.0239 0.0892 30 1 3.0825 1.3434 -0.0741 31 1 1.5872 1.9173 -0.8506 32 1 1.7071 1.8713 0.9247 33 1 0.4129 -2.2275 1.1503 34 1 1.9441 -2.7954 1.8581 35 1 2.8809 -2.7234 -0.3833 36 1 0.3356 -4.2060 -0.2719 37 1 1.8664 -4.7746 0.4361 38 1 0.1738 -6.1039 -1.7506 39 1 1.6924 -6.8136 -1.1517 40 1 0.1566 -9.5344 -3.0965 41 1 3.3567 0.0137 3.5672 42 1 1.7288 1.0845 5.4378 43 1 -0.6952 1.0742 4.4426 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581243763.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:16 Heat of formation + Delta-G solvation = 27.162118 kcal Electronic energy + Delta-G solvation = -22883.594136 eV Core-core repulsion = 19543.908764 eV Total energy + Delta-G solvation = -3339.685372 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.57558 -39.40484 -38.39844 -36.25346 -35.32855 -34.02148 -33.39941 -31.58431 -29.28004 -28.34459 -27.52511 -25.00315 -23.90356 -23.50949 -22.69607 -22.48790 -20.86565 -18.59071 -18.27027 -18.09632 -17.48867 -16.88758 -16.60290 -16.30627 -16.16011 -15.40133 -15.26476 -14.87810 -14.63471 -14.39795 -14.18760 -14.00002 -13.81900 -13.71074 -13.51887 -13.45333 -13.07234 -12.98134 -12.94689 -12.71414 -12.58216 -12.45282 -12.35740 -12.28234 -11.96196 -11.86804 -11.36760 -11.13870 -10.83210 -10.52988 -9.47795 -9.30093 -9.18179 -8.17632 -6.25619 0.78545 1.42529 1.43742 1.51008 1.69623 1.98430 2.00864 2.06232 2.43160 3.06321 3.17565 3.18947 3.29660 3.78043 3.91382 4.11357 4.20190 4.23382 4.31353 4.36384 4.47201 4.56171 4.62978 4.70452 4.74767 4.80806 4.85533 4.95290 4.99890 5.01625 5.03145 5.04346 5.16812 5.33005 5.49847 5.58934 5.65587 5.81716 5.95001 6.08419 6.13427 6.23464 6.28169 6.42821 6.79424 6.89925 7.42733 8.93154 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.027624 B = 0.002889 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.354253 B = 9688.365861 C = 9804.768378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.522 5.522 3 C 0.026 3.974 4 C 0.171 3.829 5 H 0.111 0.889 6 C 0.070 3.930 7 N -0.670 5.670 8 C 0.080 3.920 9 C 0.021 3.979 10 H 0.123 0.877 11 C 0.253 3.747 12 N -0.506 5.506 13 C 0.039 3.961 14 C -0.539 4.539 15 H 0.054 0.946 16 C 0.011 3.989 17 N -0.924 5.924 18 Si 0.948 3.052 19 H -0.281 1.281 20 H -0.282 1.282 21 H -0.263 1.263 22 C -0.049 4.049 23 C -0.216 4.216 24 C -0.227 4.227 25 C -0.049 4.049 26 O -0.179 6.179 27 H 0.035 0.965 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.019 0.981 33 H 0.080 0.920 34 H 0.040 0.960 35 H 0.337 0.663 36 H 0.102 0.898 37 H 0.031 0.969 38 H 0.036 0.964 39 H 0.000 1.000 40 H 0.264 0.736 41 H 0.154 0.846 42 H 0.164 0.836 43 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.391 21.812 13.893 25.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.243 5.243 3 C -0.122 4.122 4 C 0.061 3.939 5 H 0.129 0.871 6 C -0.060 4.060 7 N -0.300 5.300 8 C -0.051 4.051 9 C -0.001 4.001 10 H 0.140 0.860 11 C -0.063 4.063 12 N -0.183 5.183 13 C 0.000 4.000 14 C -0.577 4.577 15 H 0.072 0.928 16 C -0.188 4.188 17 N -0.564 5.564 18 Si 0.774 3.226 19 H -0.207 1.207 20 H -0.207 1.207 21 H -0.188 1.188 22 C -0.102 4.102 23 C -0.236 4.236 24 C -0.246 4.246 25 C -0.116 4.116 26 O -0.075 6.075 27 H 0.053 0.947 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.037 0.963 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.154 0.846 36 H 0.120 0.880 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.018 0.982 40 H 0.073 0.927 41 H 0.172 0.828 42 H 0.181 0.819 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -1.403 21.558 12.824 25.123 hybrid contribution 0.354 -0.759 0.746 1.122 sum -1.049 20.799 13.570 24.857 Atomic orbital electron populations 1.22520 0.86571 1.02468 1.00814 1.62100 1.09006 1.13751 1.39453 1.22404 1.00988 0.88399 1.00382 1.20536 0.99793 0.92478 0.81123 0.87072 1.22002 1.01537 0.92410 0.90008 1.60379 1.20093 1.17539 1.32025 1.21910 1.02107 0.87642 0.93396 1.19190 0.80092 1.00357 1.00414 0.85968 1.29635 0.95502 0.90237 0.90908 1.81034 1.14469 1.11769 1.11047 1.18976 0.96606 0.88979 0.95430 1.21543 1.34950 1.01271 0.99961 0.92774 1.25713 0.95036 0.97268 1.00778 1.70026 1.38487 1.10914 1.36968 0.85757 0.78166 0.77763 0.80948 1.20680 1.20747 1.18761 1.23584 0.82060 1.05026 0.99514 1.21946 1.01651 1.05830 0.94189 1.22125 0.93258 1.06891 1.02324 1.24814 1.01238 1.01873 0.83689 1.84193 1.29418 1.62137 1.31772 0.94682 0.91192 0.91169 0.90975 0.90612 0.96252 0.90180 0.94239 0.84564 0.88005 0.95068 0.94623 0.98186 0.92735 0.82819 0.81861 0.75277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 8.73 127.69 1.11 1.59 16 2 N -0.52 -10.67 4.77 -927.72 -4.42 -15.10 16 3 C 0.03 0.46 9.35 127.69 1.19 1.66 16 4 C 0.17 3.35 2.48 44.17 0.11 3.46 16 5 H 0.11 2.06 8.11 -2.38 -0.02 2.04 16 6 C 0.07 1.49 4.69 86.30 0.40 1.89 16 7 N -0.67 -16.61 6.25 -513.88 -3.21 -19.82 16 8 C 0.08 2.24 5.12 86.30 0.44 2.69 16 9 C 0.02 0.76 2.42 -12.60 -0.03 0.73 16 10 H 0.12 4.20 8.14 -2.39 -0.02 4.18 16 11 C 0.25 10.08 12.98 89.44 1.16 11.24 16 12 N -0.51 -21.81 18.54 20.00 0.37 -21.44 16 13 C 0.04 1.80 4.42 29.85 0.13 1.93 16 14 C -0.54 -28.74 8.60 25.60 0.22 -28.52 16 15 H 0.05 2.85 7.59 -2.91 -0.02 2.83 16 16 C 0.01 0.60 5.46 84.66 0.46 1.06 16 17 N -0.92 -53.37 13.29 21.45 0.28 -53.09 16 18 Si 0.95 43.71 29.54 68.60 2.03 45.73 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 21 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 22 C -0.05 -0.96 4.56 24.83 0.11 -0.85 16 23 C -0.22 -3.92 10.79 22.19 0.24 -3.68 16 24 C -0.23 -3.55 10.91 22.19 0.24 -3.30 16 25 C -0.05 -0.73 12.09 66.97 0.81 0.08 16 26 O -0.18 -3.49 7.85 -2.43 -0.02 -3.51 16 27 H 0.03 0.70 5.67 -2.39 -0.01 0.68 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 1.50 5.94 -2.38 -0.01 1.48 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.02 0.35 7.20 -2.39 -0.02 0.33 16 33 H 0.08 1.74 6.42 -2.39 -0.02 1.73 16 34 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.34 8.75 7.81 -89.69 -0.70 8.05 16 36 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.03 0.89 8.14 -2.39 -0.02 0.88 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 40 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 41 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 42 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 43 H 0.23 1.60 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -63.93 358.62 1.95 -61.98 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.30 Total: 15.25 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 6.61 Total: -10.02 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -6.98 Total: -109.44 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: -0.02 Total: -3.51 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -63.93 1.95 -61.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581243763.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.146 kcal (2) G-P(sol) polarization free energy of solvation -63.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds