Wall clock time and date at job start Tue Mar 31 2020 07:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46896 * 111.00067 * 2 1 4 4 C 1.46897 * 111.00250 * 123.96084 * 2 1 3 5 5 H 1.09001 * 109.46935 * 179.06291 * 4 2 1 6 6 C 1.52996 * 109.47315 * 59.06299 * 4 2 1 7 7 N 1.46895 * 109.47178 * 55.00315 * 6 4 2 8 8 C 1.46903 * 111.00031 * 180.02562 * 7 6 4 9 9 C 1.53004 * 109.47083 * 179.97438 * 8 7 6 10 10 H 1.08995 * 109.46860 * 54.99971 * 9 8 7 11 11 C 1.47197 * 109.46916 * 294.99783 * 9 8 7 12 12 N 5.05443 * 78.66990 * 226.36819 * 2 1 3 13 13 C 1.53002 * 109.46922 * 174.99697 * 9 8 7 14 14 C 1.50704 * 109.47047 * 184.99883 * 13 9 8 15 15 H 1.07998 * 119.99674 * 0.02562 * 14 13 9 16 16 C 1.37871 * 120.00034 * 179.97438 * 14 13 9 17 17 N 1.31522 * 119.99986 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00053 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47388 * 90.00134 * 18 16 14 20 20 H 1.48499 * 109.47158 * 210.00583 * 18 16 14 21 21 H 1.48502 * 109.47000 * 329.99904 * 18 16 14 22 22 C 1.50703 * 109.47029 * 299.05736 * 4 2 1 23 23 C 1.34511 * 125.79315 * 228.97316 * 22 4 2 24 24 C 1.41385 * 106.83860 * 180.02562 * 23 22 4 25 25 C 1.34512 * 106.84464 * 0.02562 * 24 23 22 26 26 O 1.34307 * 125.78268 * 49.00309 * 22 4 2 27 27 H 1.09000 * 109.47018 * 305.42956 * 1 2 3 28 28 H 1.08994 * 109.47505 * 65.42673 * 1 2 3 29 29 H 1.09002 * 109.47186 * 185.42974 * 1 2 3 30 30 H 1.08999 * 109.47383 * 183.95402 * 3 2 1 31 31 H 1.09000 * 109.47798 * 303.96091 * 3 2 1 32 32 H 1.09006 * 109.46797 * 63.95710 * 3 2 1 33 33 H 1.09004 * 109.47214 * 174.99848 * 6 4 2 34 34 H 1.09000 * 109.47117 * 294.99699 * 6 4 2 35 35 H 1.00897 * 111.00246 * 56.04501 * 7 6 4 36 36 H 1.08994 * 109.46776 * 299.99446 * 8 7 6 37 37 H 1.08995 * 109.47476 * 59.99404 * 8 7 6 38 38 H 1.08994 * 109.47001 * 305.00014 * 13 9 8 39 39 H 1.09001 * 109.47086 * 65.00282 * 13 9 8 40 40 H 0.97003 * 119.99556 * 179.97438 * 17 16 14 41 41 H 1.08001 * 126.57700 * 359.97438 * 23 22 4 42 42 H 1.07998 * 126.57704 * 180.02562 * 24 23 22 43 43 H 1.07998 * 125.79521 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1374 5 1 3.0849 -0.7638 1.1039 6 6 1.4859 -2.2067 1.0617 7 7 1.8359 -2.7818 -0.2440 8 6 1.3608 -4.1676 -0.3532 9 6 1.7425 -4.7311 -1.7235 10 1 2.8172 -4.6270 -1.8726 11 6 1.0271 -3.9902 -2.7752 12 7 0.4759 -3.4197 -3.5870 13 6 1.3592 -6.2108 -1.7913 14 6 1.8448 -6.7964 -3.0922 15 1 2.3742 -6.1755 -3.7996 16 6 1.6140 -8.1252 -3.3787 17 7 0.9697 -8.8815 -2.5169 18 14 2.2166 -8.8513 -4.9908 19 1 3.5903 -9.3856 -4.8104 20 1 1.3090 -9.9499 -5.4088 21 1 2.2293 -7.7955 -6.0351 22 6 1.5312 -0.1361 2.4254 23 6 2.3109 0.1664 3.4789 24 6 1.4687 0.7360 4.4615 25 6 0.2248 0.7470 3.9498 26 8 0.2687 0.2180 2.7160 27 1 -0.3633 0.5957 0.8374 28 1 -0.3634 0.4273 -0.9345 29 1 -0.3634 -1.0231 0.0972 30 1 3.0827 1.3432 -0.0709 31 1 1.5897 1.9164 -0.8523 32 1 1.7043 1.8723 0.9234 33 1 1.9464 -2.7971 1.8539 34 1 0.4029 -2.2160 1.1844 35 1 2.8296 -2.7258 -0.4091 36 1 1.8201 -4.7718 0.4292 37 1 0.2770 -4.1902 -0.2405 38 1 1.8188 -6.7436 -0.9589 39 1 0.2752 -6.3084 -1.7311 40 1 0.8071 -9.8162 -2.7187 41 1 3.3756 0.0045 3.5592 42 1 1.7670 1.0937 5.4359 43 1 -0.6592 1.1190 4.4463 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581243765.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:27 Heat of formation + Delta-G solvation = 47.601118 kcal Electronic energy + Delta-G solvation = -22938.221458 eV Core-core repulsion = 19599.422387 eV Total energy + Delta-G solvation = -3338.799070 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.87419 -38.42425 -36.90212 -34.86304 -33.48291 -33.26912 -31.83974 -30.58137 -28.16775 -27.46848 -26.08251 -23.87746 -22.67336 -22.00734 -21.77717 -21.57377 -20.11075 -17.58738 -17.09179 -16.41269 -16.35042 -15.99170 -15.41379 -15.00833 -14.66530 -14.40525 -14.05838 -13.84656 -13.66025 -13.12756 -12.94726 -12.89341 -12.80075 -12.32362 -12.15738 -12.12508 -11.92434 -11.80611 -11.70436 -11.44990 -11.14244 -11.05743 -10.98130 -10.63205 -10.49730 -10.19198 -10.14326 -9.51168 -9.20169 -8.75477 -8.43424 -8.41039 -8.16430 -6.07153 -4.09965 1.48617 2.37231 2.73634 3.31042 3.37981 3.43132 3.84412 3.87056 3.95414 4.13915 4.43237 4.62112 4.70174 4.78460 4.89631 4.99235 5.09388 5.13875 5.31115 5.32445 5.43496 5.49233 5.56893 5.59638 5.63203 5.65413 5.75869 5.79211 5.82044 5.91680 6.07279 6.14652 6.24063 6.44182 6.54739 6.78389 6.92143 6.99887 7.17232 7.45660 7.55652 7.59435 7.88591 8.26396 8.69454 8.95168 9.55406 11.03788 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029529 B = 0.002943 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.000487 B = 9510.434972 C = 9969.966888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.509 5.509 3 C 0.023 3.977 4 C 0.166 3.834 5 H 0.109 0.891 6 C 0.067 3.933 7 N -0.674 5.674 8 C 0.067 3.933 9 C 0.011 3.989 10 H 0.098 0.902 11 C 0.256 3.744 12 N -0.478 5.478 13 C 0.031 3.969 14 C -0.525 4.525 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.893 5.893 18 Si 0.891 3.109 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.034 4.034 23 C -0.208 4.208 24 C -0.214 4.214 25 C -0.049 4.049 26 O -0.166 6.166 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.023 0.977 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.342 0.658 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.036 0.964 39 H 0.026 0.974 40 H 0.262 0.738 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.681 18.948 15.502 24.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.230 5.230 3 C -0.125 4.125 4 C 0.056 3.944 5 H 0.127 0.873 6 C -0.063 4.063 7 N -0.305 5.305 8 C -0.063 4.063 9 C -0.011 4.011 10 H 0.116 0.884 11 C -0.061 4.061 12 N -0.155 5.155 13 C -0.007 4.007 14 C -0.563 4.563 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.087 4.087 23 C -0.228 4.228 24 C -0.233 4.233 25 C -0.117 4.117 26 O -0.061 6.061 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.161 0.839 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.072 0.928 41 H 0.164 0.836 42 H 0.163 0.837 43 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 1.136 19.625 13.310 23.739 hybrid contribution 1.005 -0.684 1.137 1.665 sum 2.141 18.941 14.447 23.918 Atomic orbital electron populations 1.22550 0.86582 1.02886 1.00606 1.62056 1.08883 1.12964 1.39094 1.22416 1.00658 0.89100 1.00350 1.20665 0.99736 0.93193 0.80811 0.87298 1.21999 1.01521 0.91827 0.90973 1.60333 1.21192 1.19308 1.29662 1.22073 1.01195 0.87084 0.95959 1.19173 0.98554 0.96586 0.86766 0.88370 1.28742 0.92869 0.91182 0.93274 1.80930 1.10665 1.12362 1.11548 1.19165 0.97937 0.85321 0.98308 1.21156 1.36928 0.95094 1.03101 0.92472 1.24955 0.95001 0.97211 0.96857 1.69945 1.40843 1.06934 1.35411 0.86595 0.78625 0.78897 0.83998 1.20511 1.21187 1.19827 1.23700 0.81891 1.03723 0.99408 1.21655 1.00954 1.06145 0.94040 1.21813 0.93282 1.06664 1.01571 1.24119 1.00028 1.03098 0.84477 1.84221 1.29776 1.61371 1.30770 0.94730 0.91575 0.90513 0.91426 0.91264 0.95883 0.94317 0.90470 0.83945 0.93498 0.90706 0.94539 0.95611 0.92844 0.83605 0.83669 0.78431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.74 60.06 0.53 0.78 16 2 N -0.51 -5.81 4.75 -244.60 -1.16 -6.98 16 3 C 0.02 0.23 9.34 60.06 0.56 0.79 16 4 C 0.17 1.69 2.50 -68.87 -0.17 1.51 16 5 H 0.11 0.97 8.11 -51.93 -0.42 0.55 16 6 C 0.07 0.73 4.64 -3.83 -0.02 0.72 16 7 N -0.67 -8.55 5.93 -113.78 -0.67 -9.22 16 8 C 0.07 0.97 5.05 -3.82 -0.02 0.95 16 9 C 0.01 0.20 2.36 -93.41 -0.22 -0.02 16 10 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 11 C 0.26 5.41 13.67 -20.79 -0.28 5.12 16 12 N -0.48 -11.04 18.53 42.12 0.78 -10.26 16 13 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 14 C -0.52 -14.01 8.60 -34.44 -0.30 -14.31 16 15 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 18 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.03 -0.35 4.54 -35.62 -0.16 -0.52 16 23 C -0.21 -1.97 10.79 -39.70 -0.43 -2.39 16 24 C -0.21 -1.86 10.91 -39.70 -0.43 -2.29 16 25 C -0.05 -0.42 12.09 29.41 0.36 -0.07 16 26 O -0.17 -1.78 7.87 5.68 0.04 -1.74 16 27 H 0.03 0.40 5.69 -51.93 -0.30 0.10 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 1.00 5.93 -51.93 -0.31 0.69 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.02 0.23 7.18 -51.93 -0.37 -0.14 16 33 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.94 6.47 -51.93 -0.34 0.60 16 35 H 0.34 3.92 8.73 -39.29 -0.34 3.58 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 42 H 0.15 0.96 8.06 -52.49 -0.42 0.53 16 43 H 0.20 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 359.77 15.07 5.42 5.42 Total: -1.00 -31.50 359.77 -7.37 -38.87 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -6.68 Total: -0.05 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -0.81 Total: -7.51 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -0.32 Total: -51.38 kcal Atomic # 8 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.50 -7.37 -38.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581243765.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.467 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds