Wall clock time and date at job start Tue Mar 31 2020 07:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46896 * 111.00067 * 2 1 4 4 C 1.46897 * 111.00250 * 123.96084 * 2 1 3 5 5 H 1.09001 * 109.46935 * 179.06291 * 4 2 1 6 6 C 1.52996 * 109.47315 * 59.06299 * 4 2 1 7 7 N 1.46895 * 109.47178 * 55.00315 * 6 4 2 8 8 C 1.46903 * 111.00031 * 180.02562 * 7 6 4 9 9 C 1.53004 * 109.47083 * 179.97438 * 8 7 6 10 10 H 1.08995 * 109.46860 * 54.99971 * 9 8 7 11 11 C 1.47197 * 109.46916 * 294.99783 * 9 8 7 12 12 N 5.05443 * 78.66990 * 226.36819 * 2 1 3 13 13 C 1.53002 * 109.46922 * 174.99697 * 9 8 7 14 14 C 1.50704 * 109.47047 * 184.99883 * 13 9 8 15 15 H 1.07998 * 119.99674 * 0.02562 * 14 13 9 16 16 C 1.37871 * 120.00034 * 179.97438 * 14 13 9 17 17 N 1.31522 * 119.99986 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00053 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47388 * 90.00134 * 18 16 14 20 20 H 1.48499 * 109.47158 * 210.00583 * 18 16 14 21 21 H 1.48502 * 109.47000 * 329.99904 * 18 16 14 22 22 C 1.50703 * 109.47029 * 299.05736 * 4 2 1 23 23 C 1.34511 * 125.79315 * 228.97316 * 22 4 2 24 24 C 1.41385 * 106.83860 * 180.02562 * 23 22 4 25 25 C 1.34512 * 106.84464 * 0.02562 * 24 23 22 26 26 O 1.34307 * 125.78268 * 49.00309 * 22 4 2 27 27 H 1.09000 * 109.47018 * 305.42956 * 1 2 3 28 28 H 1.08994 * 109.47505 * 65.42673 * 1 2 3 29 29 H 1.09002 * 109.47186 * 185.42974 * 1 2 3 30 30 H 1.08999 * 109.47383 * 183.95402 * 3 2 1 31 31 H 1.09000 * 109.47798 * 303.96091 * 3 2 1 32 32 H 1.09006 * 109.46797 * 63.95710 * 3 2 1 33 33 H 1.09004 * 109.47214 * 174.99848 * 6 4 2 34 34 H 1.09000 * 109.47117 * 294.99699 * 6 4 2 35 35 H 1.00897 * 111.00246 * 56.04501 * 7 6 4 36 36 H 1.08994 * 109.46776 * 299.99446 * 8 7 6 37 37 H 1.08995 * 109.47476 * 59.99404 * 8 7 6 38 38 H 1.08994 * 109.47001 * 305.00014 * 13 9 8 39 39 H 1.09001 * 109.47086 * 65.00282 * 13 9 8 40 40 H 0.97003 * 119.99556 * 179.97438 * 17 16 14 41 41 H 1.08001 * 126.57700 * 359.97438 * 23 22 4 42 42 H 1.07998 * 126.57704 * 180.02562 * 24 23 22 43 43 H 1.07998 * 125.79521 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1374 5 1 3.0849 -0.7638 1.1039 6 6 1.4859 -2.2067 1.0617 7 7 1.8359 -2.7818 -0.2440 8 6 1.3608 -4.1676 -0.3532 9 6 1.7425 -4.7311 -1.7235 10 1 2.8172 -4.6270 -1.8726 11 6 1.0271 -3.9902 -2.7752 12 7 0.4759 -3.4197 -3.5870 13 6 1.3592 -6.2108 -1.7913 14 6 1.8448 -6.7964 -3.0922 15 1 2.3742 -6.1755 -3.7996 16 6 1.6140 -8.1252 -3.3787 17 7 0.9697 -8.8815 -2.5169 18 14 2.2166 -8.8513 -4.9908 19 1 3.5903 -9.3856 -4.8104 20 1 1.3090 -9.9499 -5.4088 21 1 2.2293 -7.7955 -6.0351 22 6 1.5312 -0.1361 2.4254 23 6 2.3109 0.1664 3.4789 24 6 1.4687 0.7360 4.4615 25 6 0.2248 0.7470 3.9498 26 8 0.2687 0.2180 2.7160 27 1 -0.3633 0.5957 0.8374 28 1 -0.3634 0.4273 -0.9345 29 1 -0.3634 -1.0231 0.0972 30 1 3.0827 1.3432 -0.0709 31 1 1.5897 1.9164 -0.8523 32 1 1.7043 1.8723 0.9234 33 1 1.9464 -2.7971 1.8539 34 1 0.4029 -2.2160 1.1844 35 1 2.8296 -2.7258 -0.4091 36 1 1.8201 -4.7718 0.4292 37 1 0.2770 -4.1902 -0.2405 38 1 1.8188 -6.7436 -0.9589 39 1 0.2752 -6.3084 -1.7311 40 1 0.8071 -9.8162 -2.7187 41 1 3.3756 0.0045 3.5592 42 1 1.7670 1.0937 5.4359 43 1 -0.6592 1.1190 4.4463 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581243765.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:26 Heat of formation + Delta-G solvation = 26.700728 kcal Electronic energy + Delta-G solvation = -22939.127767 eV Core-core repulsion = 19599.422387 eV Total energy + Delta-G solvation = -3339.705379 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.56623 -39.36466 -38.31507 -36.23995 -35.28664 -34.01252 -33.36598 -31.57270 -29.27141 -28.39677 -27.52454 -25.00387 -23.91971 -23.41232 -22.69826 -22.48176 -20.86489 -18.69982 -18.31281 -18.14357 -17.29782 -16.84790 -16.61202 -16.15562 -16.03018 -15.39771 -15.23783 -15.14120 -14.60391 -14.41368 -14.11512 -13.91726 -13.77684 -13.64567 -13.49140 -13.21160 -13.14229 -13.01875 -12.98689 -12.74411 -12.63725 -12.45850 -12.39746 -12.24440 -11.91992 -11.85171 -11.35399 -11.10932 -10.81630 -10.52734 -9.47736 -9.24816 -9.14214 -8.17441 -6.25294 0.79661 1.41441 1.43620 1.52904 1.71564 2.07822 2.17072 2.24186 2.43488 3.06065 3.18045 3.22604 3.42872 3.82540 3.93387 4.13820 4.23125 4.24850 4.31911 4.35696 4.45825 4.51679 4.63870 4.69217 4.75188 4.82187 4.83648 4.90337 4.96047 5.01621 5.03871 5.06673 5.11093 5.29644 5.50171 5.61175 5.65944 5.82100 5.95961 6.08929 6.11135 6.24474 6.30591 6.65580 6.87077 7.02149 7.43237 8.93518 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029529 B = 0.002943 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.000487 B = 9510.434972 C = 9969.966888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.523 5.523 3 C 0.027 3.973 4 C 0.171 3.829 5 H 0.125 0.875 6 C 0.073 3.927 7 N -0.680 5.680 8 C 0.080 3.920 9 C 0.022 3.978 10 H 0.121 0.879 11 C 0.267 3.733 12 N -0.516 5.516 13 C 0.038 3.962 14 C -0.537 4.537 15 H 0.054 0.946 16 C 0.010 3.990 17 N -0.925 5.925 18 Si 0.948 3.052 19 H -0.266 1.266 20 H -0.285 1.285 21 H -0.276 1.276 22 C -0.052 4.052 23 C -0.210 4.210 24 C -0.225 4.225 25 C -0.054 4.054 26 O -0.185 6.185 27 H 0.037 0.963 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.020 0.980 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.352 0.648 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.036 0.964 39 H -0.002 1.002 40 H 0.263 0.737 41 H 0.161 0.839 42 H 0.165 0.835 43 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.111 19.727 16.473 26.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.244 5.244 3 C -0.121 4.121 4 C 0.061 3.939 5 H 0.143 0.857 6 C -0.057 4.057 7 N -0.313 5.313 8 C -0.050 4.050 9 C 0.000 4.000 10 H 0.139 0.861 11 C -0.049 4.049 12 N -0.193 5.193 13 C -0.001 4.001 14 C -0.575 4.575 15 H 0.073 0.927 16 C -0.189 4.189 17 N -0.565 5.565 18 Si 0.774 3.226 19 H -0.191 1.191 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.104 4.104 23 C -0.230 4.230 24 C -0.244 4.244 25 C -0.121 4.121 26 O -0.082 6.082 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.172 0.828 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.016 0.984 40 H 0.072 0.928 41 H 0.178 0.822 42 H 0.182 0.818 43 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 2.586 20.416 14.288 25.053 hybrid contribution 0.543 -0.887 0.893 1.371 sum 3.129 19.529 15.180 24.932 Atomic orbital electron populations 1.22410 0.87386 1.01845 1.00256 1.62067 1.08326 1.13975 1.40060 1.22396 1.01300 0.88258 1.00103 1.20625 1.00433 0.92201 0.80613 0.85695 1.21944 1.00768 0.92668 0.90313 1.60223 1.22004 1.17941 1.31094 1.21838 1.00735 0.88483 0.93922 1.19150 0.99395 0.93368 0.88048 0.86114 1.29291 0.92122 0.90564 0.92946 1.80929 1.11914 1.13663 1.12843 1.18988 0.95960 0.88370 0.96796 1.21570 1.36365 0.95271 1.04311 0.92745 1.25716 0.95392 0.97923 0.99820 1.70041 1.42125 1.07232 1.37065 0.85693 0.78707 0.77938 0.80227 1.19066 1.21123 1.20140 1.23667 0.82052 1.04929 0.99748 1.21955 1.01776 1.05446 0.93853 1.22140 0.93224 1.06670 1.02356 1.24783 1.01326 1.02247 0.83752 1.84195 1.30217 1.61891 1.31857 0.94472 0.92384 0.91987 0.90173 0.91400 0.96190 0.92959 0.91968 0.82807 0.91574 0.91865 0.94612 0.98353 0.92772 0.82154 0.81760 0.75667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 8.74 127.69 1.12 1.81 16 2 N -0.52 -11.44 4.75 -927.76 -4.40 -15.84 16 3 C 0.03 0.50 9.34 127.69 1.19 1.70 16 4 C 0.17 3.20 2.50 44.17 0.11 3.31 16 5 H 0.13 1.91 8.11 -2.39 -0.02 1.89 16 6 C 0.07 1.50 4.64 86.30 0.40 1.90 16 7 N -0.68 -16.16 5.93 -513.90 -3.05 -19.20 16 8 C 0.08 2.23 5.05 86.30 0.44 2.66 16 9 C 0.02 0.79 2.36 -12.60 -0.03 0.76 16 10 H 0.12 3.79 8.14 -2.39 -0.02 3.77 16 11 C 0.27 11.15 13.67 89.45 1.22 12.38 16 12 N -0.52 -23.83 18.53 19.99 0.37 -23.46 16 13 C 0.04 1.74 4.42 29.85 0.13 1.87 16 14 C -0.54 -28.51 8.60 25.60 0.22 -28.29 16 15 H 0.05 2.86 7.59 -2.91 -0.02 2.84 16 16 C 0.01 0.56 5.46 84.65 0.46 1.02 16 17 N -0.92 -53.33 13.29 21.45 0.28 -53.05 16 18 Si 0.95 43.65 29.54 68.60 2.03 45.68 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 22 C -0.05 -0.99 4.54 24.83 0.11 -0.88 16 23 C -0.21 -3.55 10.79 22.19 0.24 -3.31 16 24 C -0.22 -3.43 10.91 22.19 0.24 -3.18 16 25 C -0.05 -0.83 12.09 66.97 0.81 -0.02 16 26 O -0.19 -3.80 7.87 -2.59 -0.02 -3.82 16 27 H 0.04 0.86 5.69 -2.39 -0.01 0.84 16 28 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 1.64 5.93 -2.39 -0.01 1.63 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.02 0.38 7.18 -2.38 -0.02 0.36 16 33 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.06 1.48 6.47 -2.39 -0.02 1.47 16 35 H 0.35 7.21 8.73 -89.70 -0.78 6.43 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 40 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 41 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 42 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 43 H 0.23 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -67.02 359.77 2.10 -64.92 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.22 Total: 13.06 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 6.67 Total: -8.29 kcal Atomic # 7 Polarization: -104.77 SS G_CDS: -6.79 Total: -111.56 kcal Atomic # 8 Polarization: -3.80 SS G_CDS: -0.02 Total: -3.82 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -67.02 2.10 -64.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581243765.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.623 kcal (2) G-P(sol) polarization free energy of solvation -67.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds