Wall clock time and date at job start Tue Mar 31 2020 07:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46892 * 111.00296 * 2 1 4 4 C 1.46905 * 110.99754 * 123.95594 * 2 1 3 5 5 H 1.08997 * 109.47727 * 58.03007 * 4 2 1 6 6 C 1.52998 * 109.47065 * 178.03454 * 4 2 1 7 7 N 1.46902 * 109.47213 * 304.99731 * 6 4 2 8 8 C 1.46892 * 110.99993 * 180.02562 * 7 6 4 9 9 C 1.52998 * 109.46871 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47296 * 55.00061 * 9 8 7 11 11 C 1.47201 * 109.47459 * 294.99353 * 9 8 7 12 12 N 5.97153 * 127.10612 * 203.57286 * 2 1 3 13 13 C 1.53016 * 109.47187 * 174.99577 * 9 8 7 14 14 C 1.50698 * 109.46854 * 184.99893 * 13 9 8 15 15 H 1.07996 * 120.00462 * 0.02562 * 14 13 9 16 16 C 1.37884 * 119.99491 * 179.97438 * 14 13 9 17 17 N 1.31514 * 119.99753 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99746 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47153 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46774 * 120.00574 * 18 16 14 21 21 H 1.48500 * 109.47211 * 239.99818 * 18 16 14 22 22 C 1.50703 * 109.46621 * 298.03093 * 4 2 1 23 23 C 1.34513 * 125.78700 * 132.13216 * 22 4 2 24 24 C 1.41387 * 106.84241 * 180.02562 * 23 22 4 25 25 C 1.34510 * 106.83766 * 359.97438 * 24 23 22 26 26 O 1.34302 * 125.79290 * 311.81578 * 22 4 2 27 27 H 1.08997 * 109.47256 * 296.04839 * 1 2 3 28 28 H 1.09001 * 109.46715 * 56.05088 * 1 2 3 29 29 H 1.09004 * 109.47090 * 176.04421 * 1 2 3 30 30 H 1.09003 * 109.47337 * 176.74973 * 3 2 1 31 31 H 1.09000 * 109.46949 * 296.74770 * 3 2 1 32 32 H 1.09006 * 109.47543 * 56.74973 * 3 2 1 33 33 H 1.09004 * 109.47402 * 64.99582 * 6 4 2 34 34 H 1.09000 * 109.47058 * 184.99754 * 6 4 2 35 35 H 1.00898 * 110.99751 * 303.95524 * 7 6 4 36 36 H 1.09005 * 109.47363 * 299.99620 * 8 7 6 37 37 H 1.09003 * 109.47719 * 59.99852 * 8 7 6 38 38 H 1.09000 * 109.46941 * 305.00244 * 13 9 8 39 39 H 1.08997 * 109.46436 * 64.99531 * 13 9 8 40 40 H 0.97008 * 119.99905 * 180.02562 * 17 16 14 41 41 H 1.08001 * 126.58118 * 0.03126 * 23 22 4 42 42 H 1.07999 * 126.58228 * 179.97438 * 24 23 22 43 43 H 1.08000 * 125.78858 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7661 1.1376 5 1 1.6177 -1.7876 1.0939 6 6 3.5240 -0.7845 1.0764 7 7 3.9557 -1.3027 -0.2286 8 6 5.4212 -1.3355 -0.3235 9 6 5.8315 -1.8802 -1.6931 10 1 5.3584 -1.2879 -2.4763 11 6 5.4022 -3.2832 -1.8119 12 7 5.0716 -4.3650 -1.9046 13 6 7.3523 -1.7980 -1.8399 14 6 7.7459 -2.2190 -3.2324 15 1 6.9874 -2.5151 -3.9418 16 6 9.0746 -2.2251 -3.6010 17 7 9.9982 -1.8640 -2.7372 18 14 9.5626 -2.7475 -5.3267 19 1 8.3453 -3.1043 -6.0987 20 1 10.2664 -1.6279 -6.0023 21 1 10.4642 -3.9251 -5.2510 22 6 1.5520 -0.1213 2.4255 23 6 1.0080 -0.7587 3.4778 24 6 0.7454 0.2233 4.4605 25 6 1.1452 1.4019 3.9503 26 8 1.6383 1.1863 2.7198 27 1 -0.3633 0.4513 0.9232 28 1 -0.3633 0.5739 -0.8525 29 1 -0.3633 -1.0253 -0.0709 30 1 3.0836 1.3428 0.0583 31 1 1.6939 1.8763 -0.9177 32 1 1.5997 1.9126 0.8594 33 1 3.9053 0.2280 1.2094 34 1 3.9117 -1.4256 1.8682 35 1 3.5618 -2.2151 -0.4036 36 1 5.8159 -0.3270 -0.2001 37 1 5.8217 -1.9806 0.4586 38 1 7.6795 -0.7733 -1.6639 39 1 7.8237 -2.4597 -1.1133 40 1 10.9330 -1.8680 -2.9966 41 1 0.8099 -1.8174 3.5568 42 1 0.3078 0.0587 5.4341 43 1 1.0844 2.3586 4.4476 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581243766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:32 Heat of formation + Delta-G solvation = 47.210771 kcal Electronic energy + Delta-G solvation = -22893.340258 eV Core-core repulsion = 19554.524261 eV Total energy + Delta-G solvation = -3338.815997 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.87972 -38.45503 -37.03085 -34.91434 -33.55011 -33.27720 -31.85902 -30.59792 -28.18367 -27.47041 -26.08390 -23.88283 -22.69544 -22.01987 -21.85531 -21.55370 -20.10883 -17.56949 -16.75562 -16.67163 -16.40203 -15.98534 -15.42143 -15.29491 -14.65656 -14.52204 -14.10002 -13.78299 -13.36858 -13.14567 -13.07502 -12.87870 -12.83222 -12.46636 -12.27818 -12.15404 -12.03476 -11.88837 -11.67736 -11.44148 -11.21149 -11.05713 -10.99631 -10.70200 -10.49819 -10.22315 -10.14710 -9.52789 -9.19504 -8.75676 -8.43833 -8.42957 -8.20658 -6.07453 -4.10117 1.48230 2.37103 2.72349 3.30322 3.38453 3.43507 3.62118 3.67934 3.86133 4.12757 4.43095 4.61418 4.69713 4.78341 4.85300 4.89838 5.08315 5.13052 5.30752 5.31948 5.43569 5.48692 5.55423 5.57885 5.62485 5.64121 5.74469 5.76233 5.79439 5.91314 6.12833 6.19824 6.23782 6.40466 6.59188 6.76535 6.91311 6.98657 7.15977 7.46447 7.51136 7.56730 7.88275 8.26060 8.45027 8.94918 9.55261 11.03509 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.027677 B = 0.002893 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.430006 B = 9675.070053 C = 9791.605155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.509 5.509 3 C 0.019 3.981 4 C 0.166 3.834 5 H 0.108 0.892 6 C 0.065 3.935 7 N -0.672 5.672 8 C 0.068 3.932 9 C 0.008 3.992 10 H 0.112 0.888 11 C 0.243 3.757 12 N -0.478 5.478 13 C 0.032 3.968 14 C -0.524 4.524 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.284 1.284 22 C -0.034 4.034 23 C -0.208 4.208 24 C -0.214 4.214 25 C -0.049 4.049 26 O -0.165 6.165 27 H 0.023 0.977 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.035 0.965 33 H 0.081 0.919 34 H 0.037 0.963 35 H 0.339 0.661 36 H 0.090 0.910 37 H 0.032 0.968 38 H 0.039 0.961 39 H 0.023 0.977 40 H 0.261 0.739 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.832 8.591 13.541 24.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.231 5.231 3 C -0.129 4.129 4 C 0.056 3.944 5 H 0.125 0.875 6 C -0.065 4.065 7 N -0.303 5.303 8 C -0.062 4.062 9 C -0.014 4.014 10 H 0.130 0.870 11 C -0.073 4.073 12 N -0.156 5.156 13 C -0.007 4.007 14 C -0.562 4.562 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.210 1.210 22 C -0.087 4.087 23 C -0.228 4.228 24 C -0.233 4.233 25 C -0.117 4.117 26 O -0.061 6.061 27 H 0.042 0.958 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.099 0.901 34 H 0.055 0.945 35 H 0.157 0.843 36 H 0.108 0.892 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -18.918 7.582 12.433 23.874 hybrid contribution 0.327 -0.374 0.772 0.918 sum -18.591 7.209 13.205 23.916 Atomic orbital electron populations 1.22421 0.87620 1.02155 1.00383 1.62064 1.07091 1.14797 1.39102 1.22597 1.01849 0.87840 1.00617 1.20656 0.95869 0.97039 0.80862 0.87451 1.22023 0.92039 1.01396 0.91028 1.60427 1.08915 1.31471 1.29456 1.22086 0.86644 1.01658 0.95847 1.19315 1.01338 0.83159 0.97594 0.87000 1.29271 0.91030 0.95174 0.91871 1.80983 1.11903 1.12804 1.09865 1.19167 0.84766 0.98829 0.97895 1.21196 0.92394 1.45219 0.97425 0.92419 1.24959 0.96643 0.95098 0.97348 1.69952 1.00734 1.47879 1.34536 0.86541 0.78658 0.78282 0.84636 1.19650 1.20849 1.21046 1.23678 1.04212 0.81446 0.99361 1.21667 1.06325 1.00787 0.94046 1.21814 1.07227 0.92708 1.01550 1.24120 1.02475 1.00495 0.84632 1.84212 1.64359 1.26519 1.30993 0.95848 0.91174 0.91497 0.90210 0.91492 0.94651 0.90102 0.94494 0.84257 0.89199 0.94940 0.94241 0.95825 0.92895 0.83656 0.83671 0.78389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.33 60.06 0.56 0.77 16 2 N -0.51 -5.51 4.75 -244.58 -1.16 -6.67 16 3 C 0.02 0.20 8.78 60.06 0.53 0.72 16 4 C 0.17 1.71 2.51 -68.86 -0.17 1.54 16 5 H 0.11 1.05 8.11 -51.93 -0.42 0.63 16 6 C 0.06 0.73 4.59 -3.82 -0.02 0.71 16 7 N -0.67 -8.73 6.22 -113.78 -0.71 -9.43 16 8 C 0.07 0.99 5.12 -3.83 -0.02 0.97 16 9 C 0.01 0.14 2.42 -93.40 -0.23 -0.08 16 10 H 0.11 2.00 8.14 -51.93 -0.42 1.57 16 11 C 0.24 4.91 12.97 -20.79 -0.27 4.64 16 12 N -0.48 -10.42 18.53 42.11 0.78 -9.64 16 13 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 14 C -0.52 -14.01 8.60 -34.44 -0.30 -14.30 16 15 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -25.64 13.29 55.43 0.74 -24.90 16 18 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 C -0.03 -0.35 4.51 -35.62 -0.16 -0.51 16 23 C -0.21 -2.03 10.79 -39.70 -0.43 -2.46 16 24 C -0.21 -1.87 10.91 -39.70 -0.43 -2.30 16 25 C -0.05 -0.42 12.09 29.41 0.36 -0.06 16 26 O -0.17 -1.72 7.86 5.71 0.04 -1.68 16 27 H 0.02 0.23 7.15 -51.93 -0.37 -0.14 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.90 6.00 -51.93 -0.31 0.59 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.04 0.37 5.56 -51.93 -0.29 0.08 16 33 H 0.08 0.92 6.50 -51.93 -0.34 0.59 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.34 4.61 7.80 -39.29 -0.31 4.30 16 36 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 41 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.20 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 358.50 15.07 5.40 5.40 Total: -1.00 -30.52 358.50 -7.37 -37.89 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.64 Total: 0.76 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -0.80 Total: -8.14 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.35 Total: -50.64 kcal Atomic # 8 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.52 -7.37 -37.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581243766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.101 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds