Wall clock time and date at job start Tue Mar 31 2020 07:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46892 * 111.00296 * 2 1 4 4 C 1.46905 * 110.99754 * 123.95594 * 2 1 3 5 5 H 1.08997 * 109.47727 * 58.03007 * 4 2 1 6 6 C 1.52998 * 109.47065 * 178.03454 * 4 2 1 7 7 N 1.46902 * 109.47213 * 304.99731 * 6 4 2 8 8 C 1.46892 * 110.99993 * 180.02562 * 7 6 4 9 9 C 1.52998 * 109.46871 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47296 * 55.00061 * 9 8 7 11 11 C 1.47201 * 109.47459 * 294.99353 * 9 8 7 12 12 N 5.97153 * 127.10612 * 203.57286 * 2 1 3 13 13 C 1.53016 * 109.47187 * 174.99577 * 9 8 7 14 14 C 1.50698 * 109.46854 * 184.99893 * 13 9 8 15 15 H 1.07996 * 120.00462 * 0.02562 * 14 13 9 16 16 C 1.37884 * 119.99491 * 179.97438 * 14 13 9 17 17 N 1.31514 * 119.99753 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99746 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47153 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46774 * 120.00574 * 18 16 14 21 21 H 1.48500 * 109.47211 * 239.99818 * 18 16 14 22 22 C 1.50703 * 109.46621 * 298.03093 * 4 2 1 23 23 C 1.34513 * 125.78700 * 132.13216 * 22 4 2 24 24 C 1.41387 * 106.84241 * 180.02562 * 23 22 4 25 25 C 1.34510 * 106.83766 * 359.97438 * 24 23 22 26 26 O 1.34302 * 125.79290 * 311.81578 * 22 4 2 27 27 H 1.08997 * 109.47256 * 296.04839 * 1 2 3 28 28 H 1.09001 * 109.46715 * 56.05088 * 1 2 3 29 29 H 1.09004 * 109.47090 * 176.04421 * 1 2 3 30 30 H 1.09003 * 109.47337 * 176.74973 * 3 2 1 31 31 H 1.09000 * 109.46949 * 296.74770 * 3 2 1 32 32 H 1.09006 * 109.47543 * 56.74973 * 3 2 1 33 33 H 1.09004 * 109.47402 * 64.99582 * 6 4 2 34 34 H 1.09000 * 109.47058 * 184.99754 * 6 4 2 35 35 H 1.00898 * 110.99751 * 303.95524 * 7 6 4 36 36 H 1.09005 * 109.47363 * 299.99620 * 8 7 6 37 37 H 1.09003 * 109.47719 * 59.99852 * 8 7 6 38 38 H 1.09000 * 109.46941 * 305.00244 * 13 9 8 39 39 H 1.08997 * 109.46436 * 64.99531 * 13 9 8 40 40 H 0.97008 * 119.99905 * 180.02562 * 17 16 14 41 41 H 1.08001 * 126.58118 * 0.03126 * 23 22 4 42 42 H 1.07999 * 126.58228 * 179.97438 * 24 23 22 43 43 H 1.08000 * 125.78858 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7661 1.1376 5 1 1.6177 -1.7876 1.0939 6 6 3.5240 -0.7845 1.0764 7 7 3.9557 -1.3027 -0.2286 8 6 5.4212 -1.3355 -0.3235 9 6 5.8315 -1.8802 -1.6931 10 1 5.3584 -1.2879 -2.4763 11 6 5.4022 -3.2832 -1.8119 12 7 5.0716 -4.3650 -1.9046 13 6 7.3523 -1.7980 -1.8399 14 6 7.7459 -2.2190 -3.2324 15 1 6.9874 -2.5151 -3.9418 16 6 9.0746 -2.2251 -3.6010 17 7 9.9982 -1.8640 -2.7372 18 14 9.5626 -2.7475 -5.3267 19 1 8.3453 -3.1043 -6.0987 20 1 10.2664 -1.6279 -6.0023 21 1 10.4642 -3.9251 -5.2510 22 6 1.5520 -0.1213 2.4255 23 6 1.0080 -0.7587 3.4778 24 6 0.7454 0.2233 4.4605 25 6 1.1452 1.4019 3.9503 26 8 1.6383 1.1863 2.7198 27 1 -0.3633 0.4513 0.9232 28 1 -0.3633 0.5739 -0.8525 29 1 -0.3633 -1.0253 -0.0709 30 1 3.0836 1.3428 0.0583 31 1 1.6939 1.8763 -0.9177 32 1 1.5997 1.9126 0.8594 33 1 3.9053 0.2280 1.2094 34 1 3.9117 -1.4256 1.8682 35 1 3.5618 -2.2151 -0.4036 36 1 5.8159 -0.3270 -0.2001 37 1 5.8217 -1.9806 0.4586 38 1 7.6795 -0.7733 -1.6639 39 1 7.8237 -2.4597 -1.1133 40 1 10.9330 -1.8680 -2.9966 41 1 0.8099 -1.8174 3.5568 42 1 0.3078 0.0587 5.4341 43 1 1.0844 2.3586 4.4476 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581243766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:31 Heat of formation + Delta-G solvation = 27.336371 kcal Electronic energy + Delta-G solvation = -22894.202076 eV Core-core repulsion = 19554.524261 eV Total energy + Delta-G solvation = -3339.677816 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.57435 -39.41374 -38.40242 -36.26033 -35.32825 -34.02374 -33.39430 -31.58381 -29.28816 -28.32776 -27.52569 -25.00480 -23.90633 -23.50765 -22.68987 -22.48448 -20.86295 -18.59560 -18.27297 -18.09856 -17.48442 -16.88292 -16.60096 -16.30851 -16.15231 -15.40374 -15.25842 -14.88325 -14.63648 -14.39510 -14.18452 -14.01222 -13.82484 -13.71979 -13.51756 -13.45210 -13.06888 -12.97840 -12.93887 -12.71391 -12.57988 -12.47380 -12.34923 -12.25725 -11.95897 -11.86602 -11.36867 -11.11991 -10.83288 -10.53871 -9.47504 -9.30312 -9.17763 -8.17994 -6.25734 0.78768 1.40174 1.43100 1.53778 1.69847 1.99359 2.01631 2.05972 2.43003 3.06766 3.17402 3.19721 3.30015 3.77978 3.91308 4.11472 4.20273 4.23404 4.31655 4.37046 4.47360 4.56600 4.63209 4.70270 4.75463 4.80327 4.86014 4.95728 4.99981 5.01936 5.03107 5.04354 5.17495 5.34427 5.50174 5.59190 5.65566 5.81843 5.94849 6.08612 6.14055 6.23452 6.28440 6.42868 6.79684 6.90206 7.42726 8.93138 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.027677 B = 0.002893 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.430006 B = 9675.070053 C = 9791.605155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.522 5.522 3 C 0.023 3.977 4 C 0.170 3.830 5 H 0.112 0.888 6 C 0.070 3.930 7 N -0.670 5.670 8 C 0.080 3.920 9 C 0.021 3.979 10 H 0.122 0.878 11 C 0.253 3.747 12 N -0.505 5.505 13 C 0.038 3.962 14 C -0.537 4.537 15 H 0.054 0.946 16 C 0.010 3.990 17 N -0.924 5.924 18 Si 0.948 3.052 19 H -0.269 1.269 20 H -0.273 1.273 21 H -0.285 1.285 22 C -0.049 4.049 23 C -0.216 4.216 24 C -0.227 4.227 25 C -0.049 4.049 26 O -0.179 6.179 27 H 0.019 0.981 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.035 0.965 33 H 0.080 0.920 34 H 0.040 0.960 35 H 0.337 0.663 36 H 0.102 0.898 37 H 0.031 0.969 38 H 0.036 0.964 39 H 0.000 1.000 40 H 0.263 0.737 41 H 0.154 0.846 42 H 0.164 0.836 43 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.904 9.234 13.846 25.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.243 5.243 3 C -0.124 4.124 4 C 0.061 3.939 5 H 0.129 0.871 6 C -0.060 4.060 7 N -0.300 5.300 8 C -0.051 4.051 9 C -0.001 4.001 10 H 0.140 0.860 11 C -0.063 4.063 12 N -0.183 5.183 13 C -0.001 4.001 14 C -0.575 4.575 15 H 0.072 0.928 16 C -0.188 4.188 17 N -0.564 5.564 18 Si 0.774 3.226 19 H -0.194 1.194 20 H -0.198 1.198 21 H -0.211 1.211 22 C -0.101 4.101 23 C -0.236 4.236 24 C -0.246 4.246 25 C -0.117 4.117 26 O -0.075 6.075 27 H 0.037 0.963 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.155 0.845 36 H 0.120 0.880 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.018 0.982 40 H 0.072 0.928 41 H 0.172 0.828 42 H 0.181 0.819 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -20.007 8.229 12.741 25.106 hybrid contribution 0.625 -0.554 0.734 1.113 sum -19.381 7.674 13.475 24.822 Atomic orbital electron populations 1.22401 0.86839 1.02541 1.00373 1.62087 1.07888 1.14864 1.39457 1.22528 1.01243 0.87922 1.00748 1.20548 0.95011 0.97282 0.81106 0.87059 1.22004 0.92871 1.01145 0.89969 1.60388 1.07548 1.31273 1.30799 1.21911 0.87891 1.01943 0.93325 1.19192 0.98145 0.82477 1.00254 0.86001 1.29586 0.90373 0.95356 0.90967 1.80984 1.12738 1.13580 1.10975 1.18989 0.87840 0.97701 0.95523 1.21593 0.92418 1.44567 0.98902 0.92804 1.25715 0.96938 0.95415 1.00781 1.70042 1.01045 1.49108 1.36208 0.85644 0.78260 0.77996 0.80675 1.19373 1.19839 1.21143 1.23591 1.05337 0.81682 0.99522 1.21942 1.05930 1.01553 0.94210 1.22124 1.07571 0.92598 1.02278 1.24814 1.01155 1.01849 0.83837 1.84193 1.64794 1.26569 1.31992 0.96268 0.90628 0.91005 0.91061 0.91248 0.94638 0.90207 0.94191 0.84539 0.88010 0.95055 0.94615 0.98159 0.92755 0.82811 0.81861 0.75300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.33 127.69 1.19 1.66 16 2 N -0.52 -10.68 4.75 -927.72 -4.41 -15.09 16 3 C 0.02 0.47 8.78 127.69 1.12 1.59 16 4 C 0.17 3.34 2.51 44.17 0.11 3.45 16 5 H 0.11 2.06 8.11 -2.39 -0.02 2.04 16 6 C 0.07 1.48 4.59 86.30 0.40 1.87 16 7 N -0.67 -16.54 6.22 -513.89 -3.20 -19.74 16 8 C 0.08 2.23 5.12 86.30 0.44 2.67 16 9 C 0.02 0.76 2.42 -12.59 -0.03 0.73 16 10 H 0.12 4.18 8.14 -2.39 -0.02 4.16 16 11 C 0.25 10.07 12.97 89.45 1.16 11.23 16 12 N -0.51 -21.75 18.53 19.99 0.37 -21.38 16 13 C 0.04 1.77 4.42 29.85 0.13 1.90 16 14 C -0.54 -28.58 8.60 25.60 0.22 -28.36 16 15 H 0.05 2.85 7.59 -2.91 -0.02 2.83 16 16 C 0.01 0.56 5.46 84.66 0.46 1.03 16 17 N -0.92 -53.28 13.29 21.45 0.28 -52.99 16 18 Si 0.95 43.73 29.54 68.60 2.03 45.76 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 22 C -0.05 -0.95 4.51 24.83 0.11 -0.84 16 23 C -0.22 -3.92 10.79 22.19 0.24 -3.68 16 24 C -0.23 -3.54 10.91 22.19 0.24 -3.30 16 25 C -0.05 -0.73 12.09 66.97 0.81 0.08 16 26 O -0.18 -3.49 7.86 -2.49 -0.02 -3.51 16 27 H 0.02 0.35 7.15 -2.39 -0.02 0.33 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 29 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.07 1.54 6.00 -2.39 -0.01 1.52 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 32 H 0.04 0.71 5.56 -2.38 -0.01 0.70 16 33 H 0.08 1.73 6.50 -2.38 -0.02 1.72 16 34 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.34 8.74 7.80 -89.70 -0.70 8.04 16 36 H 0.10 2.66 8.14 -2.38 -0.02 2.64 16 37 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.66 16 39 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 40 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 41 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 42 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 43 H 0.23 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -63.86 358.50 1.97 -61.90 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.30 Total: 15.04 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: 6.61 Total: -9.98 kcal Atomic # 7 Polarization: -102.25 SS G_CDS: -6.95 Total: -109.20 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: -0.02 Total: -3.51 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -63.86 1.97 -61.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581243766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.235 kcal (2) G-P(sol) polarization free energy of solvation -63.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds