Wall clock time and date at job start Tue Mar 31 2020 07:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47459 * 2 1 4 4 C 1.35546 * 117.00205 * 179.97438 * 3 2 1 5 5 C 1.38925 * 120.46305 * 179.97438 * 4 3 2 6 6 C 1.39235 * 118.28301 * 179.97438 * 5 4 3 7 7 N 1.38611 * 120.49652 * 180.02562 * 6 5 4 8 8 C 1.46846 * 110.99672 * 304.20936 * 7 6 5 9 9 C 1.53040 * 109.51964 * 174.15961 * 8 7 6 10 10 C 1.53119 * 109.28089 * 59.17912 * 9 8 7 11 11 C 1.52993 * 109.52330 * 182.43958 * 10 9 8 12 12 C 1.50698 * 109.47494 * 294.68226 * 11 10 9 13 13 H 1.08003 * 119.99663 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00535 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99627 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00227 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47481 * 89.99596 * 16 14 12 18 18 H 1.48502 * 109.47062 * 210.00057 * 16 14 12 19 19 H 1.48502 * 109.46885 * 329.99438 * 16 14 12 20 20 C 1.53124 * 109.15841 * 302.34776 * 10 9 8 21 21 C 1.46846 * 111.00055 * 179.97438 * 7 6 5 22 22 N 1.33153 * 119.00821 * 0.27307 * 6 5 4 23 23 C 1.31726 * 120.83006 * 359.43623 * 22 6 5 24 24 N 1.31770 * 121.89742 * 0.58383 * 23 22 6 25 25 H 1.09001 * 109.46420 * 60.00372 * 1 2 3 26 26 H 1.08997 * 109.47282 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47368 * 300.00508 * 1 2 3 28 28 H 1.08995 * 109.47368 * 239.99492 * 2 1 3 29 29 H 1.09005 * 109.46905 * 119.99660 * 2 1 3 30 30 H 1.07997 * 120.85361 * 359.95582 * 5 4 3 31 31 H 1.08996 * 109.46231 * 294.17707 * 8 7 6 32 32 H 1.09004 * 109.46418 * 54.14547 * 8 7 6 33 33 H 1.09004 * 109.50602 * 299.23671 * 9 8 7 34 34 H 1.08998 * 109.50366 * 179.12192 * 9 8 7 35 35 H 1.08999 * 109.51878 * 62.24548 * 10 9 8 36 36 H 1.09007 * 109.47317 * 54.68551 * 11 10 9 37 37 H 1.09000 * 109.47026 * 174.68099 * 11 10 9 38 38 H 0.96997 * 119.99785 * 179.97438 * 15 14 12 39 39 H 1.08999 * 109.49853 * 297.70868 * 20 10 9 40 40 H 1.08996 * 109.49839 * 177.59898 * 20 10 9 41 41 H 1.09001 * 109.45990 * 305.85532 * 21 7 6 42 42 H 1.08997 * 109.46419 * 65.82213 * 21 7 6 43 43 H 1.08004 * 119.04955 * 180.30687 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3502 1.5248 0.0005 5 6 3.8916 2.8042 0.0000 6 6 5.2779 2.9340 0.0012 7 7 5.8670 4.1887 0.0013 8 6 5.3938 4.9922 -1.1332 9 6 5.9498 6.4136 -1.0202 10 6 7.4800 6.3588 -1.0124 11 6 8.0412 7.7714 -0.8385 12 6 7.6857 8.6051 -2.0425 13 1 7.1159 8.1708 -2.8508 14 6 8.0876 9.9221 -2.1124 15 7 8.7810 10.4510 -1.1279 16 14 7.6463 10.9555 -3.6045 17 1 6.3410 11.6252 -3.3744 18 1 8.6971 11.9815 -3.8244 19 1 7.5499 10.0813 -4.8011 20 6 7.9453 5.4766 0.1494 21 6 7.3316 4.0825 0.0032 22 7 6.0293 1.8348 -0.0029 23 6 5.4765 0.6391 0.0033 24 7 4.1689 0.4766 0.0022 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.2536 3.6756 -0.0015 31 1 5.7355 4.5415 -2.0649 32 1 4.3044 5.0266 -1.1246 33 1 5.5972 6.8699 -0.0952 34 1 5.6111 7.0054 -1.8706 35 1 7.8341 5.9384 -1.9536 36 1 7.6141 8.2246 0.0562 37 1 9.1255 7.7218 -0.7383 38 1 9.0642 11.3774 -1.1772 39 1 7.6242 5.9182 1.0928 40 1 9.0324 5.3992 0.1347 41 1 7.6492 3.4562 0.8369 42 1 7.6646 3.6359 -0.9337 43 1 6.1135 -0.2331 0.0048 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582119093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:12 Heat of formation + Delta-G solvation = 1.383322 kcal Electronic energy + Delta-G solvation = -22907.045371 eV Core-core repulsion = 19566.242147 eV Total energy + Delta-G solvation = -3340.803224 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.42103 -39.41837 -38.23012 -35.04322 -32.99300 -32.62866 -31.57899 -30.88566 -30.24942 -27.80165 -24.80916 -24.64501 -23.63940 -22.59841 -22.17118 -20.90806 -19.14982 -18.79069 -17.81165 -16.64089 -16.25314 -16.05355 -15.52365 -15.20899 -15.03393 -14.52860 -14.29499 -14.08264 -13.86140 -13.56395 -13.05427 -13.02671 -12.92351 -12.56534 -12.15661 -11.96954 -11.70199 -11.35996 -11.21521 -10.96866 -10.90525 -10.82689 -10.74526 -10.50524 -10.27987 -10.03748 -9.64685 -9.48099 -9.38938 -9.10724 -8.91170 -8.40418 -8.34047 -5.99148 -4.01002 0.90593 1.10388 2.59704 3.31427 3.38263 3.40739 3.44091 3.75607 3.95583 4.26940 4.45924 4.66350 4.69592 4.86406 5.03656 5.09219 5.18918 5.28180 5.30050 5.36469 5.43674 5.47318 5.47627 5.61212 5.66977 5.71875 5.78883 5.88141 6.04298 6.17832 6.28235 6.36255 6.56681 6.66371 6.87732 6.96739 7.00406 7.09463 7.16413 7.17342 7.68119 7.83242 8.00945 8.04452 8.43297 9.05484 9.62750 11.12098 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.027169 B = 0.002947 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.333607 B = 9499.536402 C =10248.418269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.066 3.934 3 O -0.302 6.302 4 C 0.376 3.624 5 C -0.269 4.269 6 C 0.389 3.611 7 N -0.468 5.468 8 C 0.060 3.940 9 C -0.102 4.102 10 C -0.084 4.084 11 C 0.028 3.972 12 C -0.516 4.516 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.895 5.895 16 Si 0.889 3.111 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.117 4.117 21 C 0.070 3.930 22 N -0.576 5.576 23 C 0.356 3.644 24 N -0.603 5.603 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.151 0.849 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.017 0.983 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.050 0.950 43 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.837 -20.811 2.674 24.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 O -0.207 6.207 4 C 0.192 3.808 5 C -0.295 4.295 6 C 0.151 3.849 7 N -0.184 5.184 8 C -0.064 4.064 9 C -0.140 4.140 10 C -0.103 4.103 11 C -0.009 4.009 12 C -0.554 4.554 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.155 4.155 21 C -0.056 4.056 22 N -0.301 5.301 23 C 0.066 3.934 24 N -0.336 5.336 25 H 0.085 0.915 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.169 0.831 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -11.584 -20.867 3.132 24.071 hybrid contribution -0.480 0.773 -1.261 1.555 sum -12.064 -20.095 1.871 23.512 Atomic orbital electron populations 1.21832 0.92845 1.02967 1.03483 1.22665 0.94848 0.80730 1.02723 1.86232 1.16502 1.31059 1.86886 1.19720 0.84134 0.89580 0.87413 1.21216 0.95026 0.97114 1.16136 1.19972 0.89034 0.89461 0.86391 1.58774 1.10254 1.08063 1.41271 1.22478 1.00143 0.95184 0.88623 1.21640 0.96763 0.92126 1.03452 1.21294 0.94070 0.98680 0.96238 1.19109 0.95984 0.88677 0.97080 1.21239 1.34263 0.95765 1.04174 0.92687 1.25019 0.95285 0.98079 0.96092 1.69963 1.37869 1.13888 1.31735 0.86651 0.78089 0.80229 0.83368 1.20713 1.21307 1.19955 1.21806 0.99822 0.93332 1.00552 1.22104 0.82883 0.98613 1.02035 1.68485 1.40737 0.98817 1.22083 1.24453 0.87287 0.94296 0.87349 1.68106 1.06795 1.33922 1.24737 0.91549 0.90192 0.91542 0.91412 0.91409 0.83087 0.93552 0.90296 0.91330 0.89875 0.92625 0.96435 0.96564 0.93058 0.91475 0.91269 0.90093 0.93180 0.78601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16 2 C 0.07 0.56 6.06 37.16 0.23 0.79 16 3 O -0.30 -3.53 10.13 -18.33 -0.19 -3.71 16 4 C 0.38 4.84 7.52 -16.79 -0.13 4.71 16 5 C -0.27 -3.59 9.22 -38.96 -0.36 -3.95 16 6 C 0.39 5.59 6.40 -154.72 -0.99 4.60 16 7 N -0.47 -7.04 4.68 -173.12 -0.81 -7.85 16 8 C 0.06 0.89 5.25 -3.83 -0.02 0.87 16 9 C -0.10 -1.80 5.15 -26.65 -0.14 -1.93 16 10 C -0.08 -1.64 2.20 -90.50 -0.20 -1.84 16 11 C 0.03 0.71 4.45 -27.89 -0.12 0.58 16 12 C -0.52 -14.04 8.45 -34.44 -0.29 -14.33 16 13 H 0.05 1.45 7.08 -52.48 -0.37 1.07 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 16 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 C -0.12 -1.98 5.38 -26.65 -0.14 -2.12 16 21 C 0.07 1.05 4.67 -3.84 -0.02 1.04 16 22 N -0.58 -7.89 8.85 -13.87 -0.12 -8.01 16 23 C 0.36 4.11 12.28 -92.23 -1.13 2.97 16 24 N -0.60 -7.39 9.38 -14.72 -0.14 -7.52 16 25 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 29 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 30 H 0.15 1.86 7.22 -52.49 -0.38 1.48 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.03 6.74 -51.93 -0.35 0.68 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.08 1.54 7.05 -51.93 -0.37 1.17 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.08 1.19 7.73 -51.93 -0.40 0.78 16 42 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 43 H 0.20 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 347.91 15.07 5.24 5.24 Total: -1.00 -30.55 347.91 -10.25 -40.79 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -6.92 Total: -1.73 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -3.03 Total: -7.69 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: -0.33 Total: -49.24 kcal Atomic # 8 Polarization: -3.53 SS G_CDS: -0.19 Total: -3.71 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.55 -10.25 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582119093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.177 kcal (2) G-P(sol) polarization free energy of solvation -30.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds