Wall clock time and date at job start Tue Mar 31 2020 07:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47459 * 2 1 4 4 C 1.35546 * 117.00205 * 179.97438 * 3 2 1 5 5 C 1.38925 * 120.46305 * 179.97438 * 4 3 2 6 6 C 1.39235 * 118.28301 * 179.97438 * 5 4 3 7 7 N 1.38611 * 120.49652 * 180.02562 * 6 5 4 8 8 C 1.46846 * 110.99672 * 304.20936 * 7 6 5 9 9 C 1.53040 * 109.51964 * 174.15961 * 8 7 6 10 10 C 1.53119 * 109.28089 * 59.17912 * 9 8 7 11 11 C 1.52993 * 109.52330 * 182.43958 * 10 9 8 12 12 C 1.50698 * 109.47494 * 294.68226 * 11 10 9 13 13 H 1.08003 * 119.99663 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00535 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99627 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00227 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47481 * 89.99596 * 16 14 12 18 18 H 1.48502 * 109.47062 * 210.00057 * 16 14 12 19 19 H 1.48502 * 109.46885 * 329.99438 * 16 14 12 20 20 C 1.53124 * 109.15841 * 302.34776 * 10 9 8 21 21 C 1.46846 * 111.00055 * 179.97438 * 7 6 5 22 22 N 1.33153 * 119.00821 * 0.27307 * 6 5 4 23 23 C 1.31726 * 120.83006 * 359.43623 * 22 6 5 24 24 N 1.31770 * 121.89742 * 0.58383 * 23 22 6 25 25 H 1.09001 * 109.46420 * 60.00372 * 1 2 3 26 26 H 1.08997 * 109.47282 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47368 * 300.00508 * 1 2 3 28 28 H 1.08995 * 109.47368 * 239.99492 * 2 1 3 29 29 H 1.09005 * 109.46905 * 119.99660 * 2 1 3 30 30 H 1.07997 * 120.85361 * 359.95582 * 5 4 3 31 31 H 1.08996 * 109.46231 * 294.17707 * 8 7 6 32 32 H 1.09004 * 109.46418 * 54.14547 * 8 7 6 33 33 H 1.09004 * 109.50602 * 299.23671 * 9 8 7 34 34 H 1.08998 * 109.50366 * 179.12192 * 9 8 7 35 35 H 1.08999 * 109.51878 * 62.24548 * 10 9 8 36 36 H 1.09007 * 109.47317 * 54.68551 * 11 10 9 37 37 H 1.09000 * 109.47026 * 174.68099 * 11 10 9 38 38 H 0.96997 * 119.99785 * 179.97438 * 15 14 12 39 39 H 1.08999 * 109.49853 * 297.70868 * 20 10 9 40 40 H 1.08996 * 109.49839 * 177.59898 * 20 10 9 41 41 H 1.09001 * 109.45990 * 305.85532 * 21 7 6 42 42 H 1.08997 * 109.46419 * 65.82213 * 21 7 6 43 43 H 1.08004 * 119.04955 * 180.30687 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3502 1.5248 0.0005 5 6 3.8916 2.8042 0.0000 6 6 5.2779 2.9340 0.0012 7 7 5.8670 4.1887 0.0013 8 6 5.3938 4.9922 -1.1332 9 6 5.9498 6.4136 -1.0202 10 6 7.4800 6.3588 -1.0124 11 6 8.0412 7.7714 -0.8385 12 6 7.6857 8.6051 -2.0425 13 1 7.1159 8.1708 -2.8508 14 6 8.0876 9.9221 -2.1124 15 7 8.7810 10.4510 -1.1279 16 14 7.6463 10.9555 -3.6045 17 1 6.3410 11.6252 -3.3744 18 1 8.6971 11.9815 -3.8244 19 1 7.5499 10.0813 -4.8011 20 6 7.9453 5.4766 0.1494 21 6 7.3316 4.0825 0.0032 22 7 6.0293 1.8348 -0.0029 23 6 5.4765 0.6391 0.0033 24 7 4.1689 0.4766 0.0022 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.2536 3.6756 -0.0015 31 1 5.7355 4.5415 -2.0649 32 1 4.3044 5.0266 -1.1246 33 1 5.5972 6.8699 -0.0952 34 1 5.6111 7.0054 -1.8706 35 1 7.8341 5.9384 -1.9536 36 1 7.6141 8.2246 0.0562 37 1 9.1255 7.7218 -0.7383 38 1 9.0642 11.3774 -1.1772 39 1 7.6242 5.9182 1.0928 40 1 9.0324 5.3992 0.1347 41 1 7.6492 3.4562 0.8369 42 1 7.6646 3.6359 -0.9337 43 1 6.1135 -0.2331 0.0048 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582119093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:11 Heat of formation + Delta-G solvation = -16.529546 kcal Electronic energy + Delta-G solvation = -22907.822131 eV Core-core repulsion = 19566.242147 eV Total energy + Delta-G solvation = -3341.579984 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.40801 -40.50073 -39.27865 -36.53153 -34.57589 -33.75891 -32.64943 -32.10064 -31.33472 -29.51552 -26.32373 -25.67117 -24.72612 -23.81591 -23.26644 -22.37256 -20.61601 -19.75073 -18.87712 -18.32906 -17.45612 -17.13330 -16.55096 -16.46744 -16.12791 -16.08860 -15.41228 -15.16029 -14.99115 -14.84961 -14.64377 -14.24658 -13.80348 -13.66615 -13.44020 -13.28680 -13.01762 -12.73538 -12.62015 -12.56248 -12.29368 -12.15651 -11.99407 -11.88957 -11.63765 -11.57612 -11.25154 -10.94663 -10.76352 -10.50843 -10.46566 -10.30856 -9.50327 -8.15267 -6.24484 -0.05965 0.11134 1.41804 1.42303 1.52948 1.74267 2.39216 2.43448 2.77548 3.12322 3.18337 3.29204 3.82384 3.93273 3.97152 4.05170 4.07275 4.10945 4.20762 4.32870 4.40520 4.43706 4.47106 4.53741 4.67922 4.74523 4.79122 4.88994 4.93127 4.93999 5.03002 5.15612 5.22527 5.33340 5.35544 5.42032 5.54542 5.59539 5.81030 5.90512 5.95995 6.02739 6.17114 6.31174 6.92054 7.08740 7.43946 8.96596 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.027169 B = 0.002947 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.333607 B = 9499.536402 C =10248.418269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.060 3.940 3 O -0.311 6.311 4 C 0.372 3.628 5 C -0.276 4.276 6 C 0.379 3.621 7 N -0.477 5.477 8 C 0.071 3.929 9 C -0.095 4.095 10 C -0.077 4.077 11 C 0.034 3.966 12 C -0.528 4.528 13 H 0.063 0.937 14 C -0.003 4.003 15 N -0.935 5.935 16 Si 0.959 3.041 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.263 1.263 20 C -0.110 4.110 21 C 0.083 3.917 22 N -0.590 5.590 23 C 0.357 3.643 24 N -0.603 5.603 25 H 0.064 0.936 26 H 0.102 0.898 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.157 0.843 31 H 0.049 0.951 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.053 0.947 36 H -0.010 1.010 37 H -0.012 1.012 38 H 0.261 0.739 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.051 0.949 43 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.282 -22.669 1.769 26.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.015 4.015 3 O -0.216 6.216 4 C 0.187 3.813 5 C -0.302 4.302 6 C 0.141 3.859 7 N -0.193 5.193 8 C -0.054 4.054 9 C -0.133 4.133 10 C -0.096 4.096 11 C -0.003 4.003 12 C -0.566 4.566 13 H 0.081 0.919 14 C -0.200 4.200 15 N -0.576 5.576 16 Si 0.784 3.216 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.187 1.187 20 C -0.148 4.148 21 C -0.044 4.044 22 N -0.316 5.316 23 C 0.068 3.932 24 N -0.336 5.336 25 H 0.083 0.917 26 H 0.121 0.879 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.175 0.825 31 H 0.067 0.933 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.008 0.992 37 H 0.006 0.994 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.069 0.931 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -13.051 -22.758 2.224 26.328 hybrid contribution -0.054 1.264 -0.938 1.574 sum -13.105 -21.494 1.286 25.207 Atomic orbital electron populations 1.21855 0.90958 1.04434 1.03358 1.22919 0.96310 0.79405 1.02833 1.86237 1.15877 1.32916 1.86524 1.19868 0.84767 0.89628 0.87007 1.21286 0.94775 0.97741 1.16439 1.19961 0.89454 0.89274 0.87203 1.58741 1.09988 1.08976 1.41592 1.22330 1.01170 0.93041 0.88839 1.21485 0.95174 0.94204 1.02457 1.21132 0.95436 0.95732 0.97255 1.18993 0.94190 0.91777 0.95338 1.21659 1.33777 0.96266 1.04856 0.91888 1.25942 0.95244 0.99635 0.99165 1.70105 1.39269 1.14309 1.33952 0.85537 0.77869 0.78402 0.79787 1.19893 1.21208 1.18717 1.21689 1.00165 0.94098 0.98829 1.21922 0.83169 0.96907 1.02354 1.68500 1.41077 0.99277 1.22703 1.25197 0.87474 0.94677 0.85835 1.68203 1.07074 1.33649 1.24658 0.91652 0.87917 0.91655 0.91259 0.91282 0.82515 0.93263 0.88248 0.92339 0.90901 0.92805 0.99156 0.99390 0.93022 0.92305 0.91001 0.89309 0.93109 0.75054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.28 71.98 0.74 -0.79 16 2 C 0.06 0.92 6.06 71.98 0.44 1.36 16 3 O -0.31 -6.77 10.13 -88.52 -0.90 -7.66 16 4 C 0.37 8.95 7.52 84.68 0.64 9.58 16 5 C -0.28 -6.94 9.22 22.67 0.21 -6.74 16 6 C 0.38 10.25 6.40 132.99 0.85 11.11 16 7 N -0.48 -13.76 4.68 -701.63 -3.28 -17.04 16 8 C 0.07 2.01 5.25 86.33 0.45 2.46 16 9 C -0.10 -3.35 5.15 30.65 0.16 -3.20 16 10 C -0.08 -3.04 2.20 -10.71 -0.02 -3.07 16 11 C 0.03 1.76 4.45 29.85 0.13 1.89 16 12 C -0.53 -29.15 8.45 25.60 0.22 -28.93 16 13 H 0.06 3.31 7.08 -2.91 -0.02 3.29 16 14 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 15 N -0.94 -56.95 13.29 21.45 0.28 -56.67 16 16 Si 0.96 43.98 29.54 68.60 2.03 46.00 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 18 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 19 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 20 C -0.11 -3.72 5.38 30.64 0.16 -3.56 16 21 C 0.08 2.41 4.67 86.32 0.40 2.81 16 22 N -0.59 -14.96 8.85 -197.79 -1.75 -16.71 16 23 C 0.36 7.34 12.28 180.91 2.22 9.56 16 24 N -0.60 -13.46 9.38 -313.04 -2.94 -16.40 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 1.04 8.12 -2.39 -0.02 1.02 16 29 H 0.07 1.04 8.12 -2.38 -0.02 1.02 16 30 H 0.16 3.64 7.22 -2.91 -0.02 3.62 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.10 2.42 6.74 -2.38 -0.02 2.40 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.07 2.69 7.05 -2.39 -0.02 2.67 16 35 H 0.05 2.14 8.14 -2.39 -0.02 2.13 16 36 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 37 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 38 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 39 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.09 2.48 7.73 -2.39 -0.02 2.46 16 42 H 0.05 1.48 8.12 -2.39 -0.02 1.46 16 43 H 0.23 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -66.05 347.91 1.49 -64.56 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 0.98 Total: 11.11 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 7.06 Total: -7.19 kcal Atomic # 7 Polarization: -99.14 SS G_CDS: -7.68 Total: -106.82 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.90 Total: -7.66 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -66.05 1.49 -64.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582119093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.031 kcal (2) G-P(sol) polarization free energy of solvation -66.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds