Wall clock time and date at job start Tue Mar 31 2020 06:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46494 * 109.46973 * 2 1 4 4 C 1.35410 * 126.43670 * 265.15944 * 3 2 1 5 5 C 1.35565 * 107.16087 * 180.28163 * 4 3 2 6 6 N 1.33107 * 108.34859 * 359.73833 * 5 4 3 7 7 C 1.31613 * 109.09568 * 359.97438 * 6 5 4 8 8 C 1.47403 * 125.86420 * 179.97438 * 7 6 5 9 9 O 1.21608 * 120.00033 * 174.34222 * 8 7 6 10 10 N 1.34778 * 120.00132 * 354.61800 * 8 7 6 11 11 C 1.46924 * 120.62667 * 4.17206 * 10 8 7 12 12 C 1.52769 * 109.00734 * 233.58180 * 11 10 8 13 13 C 1.53036 * 109.38257 * 305.59116 * 12 11 10 14 14 C 1.52995 * 109.44898 * 181.25358 * 13 12 11 15 15 C 1.50698 * 109.47165 * 64.93691 * 14 13 12 16 16 H 1.07998 * 120.00024 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99778 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99442 * 180.02562 * 17 15 14 19 19 Si 1.86793 * 120.00113 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.46999 * 90.00149 * 19 17 15 21 21 H 1.48503 * 109.46954 * 210.00158 * 19 17 15 22 22 H 1.48498 * 109.47122 * 329.99992 * 19 17 15 23 23 C 1.53042 * 109.53960 * 61.23868 * 13 12 11 24 24 C 1.46921 * 120.63193 * 184.44971 * 10 8 7 25 25 H 1.08999 * 109.46998 * 300.00325 * 1 2 3 26 26 H 1.08998 * 109.46712 * 60.00021 * 1 2 3 27 27 H 1.08996 * 109.47287 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46998 * 239.99675 * 2 1 3 29 29 H 1.08998 * 109.46712 * 119.99979 * 2 1 3 30 30 H 1.08003 * 126.41972 * 0.02562 * 4 3 2 31 31 H 1.07995 * 125.82797 * 179.76050 * 5 4 3 32 32 H 1.09000 * 109.58685 * 353.41784 * 11 10 8 33 33 H 1.08999 * 109.58581 * 113.84461 * 11 10 8 34 34 H 1.09000 * 109.56175 * 185.55308 * 12 11 10 35 35 H 1.09004 * 109.35600 * 65.49747 * 12 11 10 36 36 H 1.08998 * 109.46021 * 301.22028 * 13 12 11 37 37 H 1.09006 * 109.47261 * 184.93836 * 14 13 12 38 38 H 1.09005 * 109.47242 * 304.93887 * 14 13 12 39 39 H 0.97004 * 119.99560 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.49794 * 178.68150 * 23 13 12 41 41 H 1.09000 * 109.52595 * 58.60229 * 23 13 12 42 42 H 1.09001 * 109.58637 * 246.15646 * 24 10 8 43 43 H 1.08998 * 109.58911 * 6.44306 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3731 2.1088 -1.0855 5 6 2.7700 3.3257 -0.6391 6 7 2.6551 3.3435 0.6869 7 6 2.1982 2.1787 1.0952 8 6 1.9333 1.7972 2.4941 9 8 1.4139 0.7265 2.7444 10 7 2.2617 2.6373 3.4955 11 6 2.7998 3.9734 3.2056 12 6 4.1177 4.1528 3.9571 13 6 3.8958 3.8735 5.4453 14 6 5.2077 4.0832 6.2041 15 6 5.6077 5.5339 6.1244 16 1 4.9880 6.2362 5.5867 17 6 6.7650 5.9646 6.7380 18 7 7.1138 7.2308 6.6689 19 14 7.8372 4.7498 7.6674 20 1 8.8405 4.1657 6.7414 21 1 8.5349 5.4516 8.7746 22 1 6.9885 3.6663 8.2251 23 6 3.4250 2.4291 5.6304 24 6 2.0940 2.2323 4.8978 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.3487 1.7797 -2.1139 31 1 3.1194 4.1417 -1.2542 32 1 2.9753 4.0720 2.1343 33 1 2.0894 4.7324 3.5331 34 1 4.4753 5.1743 3.8280 35 1 4.8566 3.4554 3.5623 36 1 3.1388 4.5547 5.8337 37 1 5.0728 3.8003 7.2481 38 1 5.9879 3.4661 5.7583 39 1 7.9281 7.5337 7.1002 40 1 3.2897 2.2238 6.6923 41 1 4.1703 1.7476 5.2202 42 1 1.3249 2.8465 5.3661 43 1 1.8016 1.1832 4.9427 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584055287.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:13 Heat of formation + Delta-G solvation = 28.520772 kcal Electronic energy + Delta-G solvation = -23767.525362 eV Core-core repulsion = 20427.898906 eV Total energy + Delta-G solvation = -3339.626456 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.50602 -39.65609 -37.39305 -35.36606 -33.91359 -32.17262 -31.18982 -30.36368 -29.60716 -28.42786 -25.18742 -24.11150 -23.01574 -22.67644 -21.60868 -20.90823 -19.69004 -18.80531 -17.32814 -16.75051 -16.46294 -16.02384 -15.65618 -14.86876 -14.63667 -14.34302 -14.11215 -14.00384 -13.76931 -13.61391 -13.19728 -12.95575 -12.90529 -12.72484 -12.36097 -12.27452 -12.11612 -11.60291 -11.36307 -11.12522 -10.85536 -10.64690 -10.33048 -10.17354 -10.00954 -9.93763 -9.80436 -9.49038 -9.08214 -8.86407 -8.78414 -8.48261 -8.31042 -5.99207 -3.95867 1.26767 2.26281 2.50016 3.21010 3.33990 3.38060 3.41378 3.45327 4.21099 4.36821 4.49466 4.49966 4.69525 4.94999 5.06367 5.21701 5.26534 5.34169 5.35672 5.40988 5.45851 5.52204 5.70626 5.74885 5.80704 5.88405 6.00016 6.07473 6.25946 6.34069 6.43420 6.47801 6.58788 6.68018 6.91323 6.94652 7.02779 7.17525 7.34183 7.45540 7.51277 7.72134 7.85716 8.16430 8.60041 9.06465 9.64137 11.14154 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025796 B = 0.003750 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.199044 B = 7465.567379 C = 8038.392166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 N -0.414 5.414 4 C -0.034 4.034 5 C -0.028 4.028 6 N -0.437 5.437 7 C 0.154 3.846 8 C 0.600 3.400 9 O -0.555 6.555 10 N -0.575 5.575 11 C 0.050 3.950 12 C -0.114 4.114 13 C -0.075 4.075 14 C -0.009 4.009 15 C -0.513 4.513 16 H 0.074 0.926 17 C 0.065 3.935 18 N -0.905 5.905 19 Si 0.878 3.122 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.266 1.266 23 C -0.131 4.131 24 C 0.113 3.887 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.181 0.819 31 H 0.179 0.821 32 H 0.157 0.843 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.014 0.986 38 H 0.010 0.990 39 H 0.261 0.739 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.439 -13.817 -15.700 24.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.095 5.095 4 C -0.172 4.172 5 C -0.180 4.180 6 N -0.159 5.159 7 C -0.105 4.105 8 C 0.386 3.614 9 O -0.434 6.434 10 N -0.305 5.305 11 C -0.072 4.072 12 C -0.152 4.152 13 C -0.094 4.094 14 C -0.046 4.046 15 C -0.551 4.551 16 H 0.092 0.908 17 C -0.136 4.136 18 N -0.544 5.544 19 Si 0.705 3.295 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.191 1.191 23 C -0.169 4.169 24 C -0.009 4.009 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.126 0.874 30 H 0.199 0.801 31 H 0.196 0.804 32 H 0.173 0.827 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.033 0.967 38 H 0.028 0.972 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.462 -13.791 -14.925 23.838 hybrid contribution 0.653 -1.031 -0.018 1.220 sum -11.809 -14.822 -14.943 24.134 Atomic orbital electron populations 1.22064 0.93523 1.03321 1.03107 1.22083 0.96381 0.78786 1.05133 1.45255 1.45296 1.12827 1.06098 1.22878 1.07301 0.93993 0.92998 1.22603 1.06520 0.97604 0.91287 1.69717 1.16082 1.18344 1.11721 1.22745 1.09114 0.88420 0.90226 1.16543 0.79034 0.83815 0.82036 1.90752 1.45394 1.23426 1.83823 1.47877 1.60893 1.16328 1.05392 1.23292 0.95625 0.80709 1.07537 1.21763 0.95309 1.03373 0.94777 1.21055 0.99377 0.93291 0.95659 1.19618 0.92419 0.97675 0.94918 1.21155 1.07807 0.92605 1.33531 0.90766 1.25028 0.97563 0.94925 0.96047 1.69921 1.24794 1.14693 1.45022 0.86813 0.80890 0.81813 0.79954 1.20449 1.21540 1.19106 1.22060 0.95755 0.99320 0.99786 1.21739 0.98351 1.01235 0.79528 0.91077 0.92362 0.90446 0.89061 0.87427 0.80139 0.80397 0.82737 0.92123 0.89310 0.92853 0.91775 0.96742 0.97214 0.92875 0.91038 0.92161 0.91298 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 10.17 37.16 0.38 -0.91 16 2 C 0.10 0.84 6.14 -4.04 -0.02 0.81 16 3 N -0.41 -4.60 2.76 -114.58 -0.32 -4.92 16 4 C -0.03 -0.31 11.53 -16.93 -0.20 -0.50 16 5 C -0.03 -0.31 11.85 -17.95 -0.21 -0.52 16 6 N -0.44 -6.20 7.51 -11.26 -0.08 -6.29 16 7 C 0.15 2.20 7.58 -154.52 -1.17 1.03 16 8 C 0.60 9.49 7.68 -12.53 -0.10 9.40 16 9 O -0.55 -9.14 13.69 5.27 0.07 -9.07 16 10 N -0.57 -9.16 2.98 -174.31 -0.52 -9.68 16 11 C 0.05 0.81 6.29 -3.93 -0.02 0.79 16 12 C -0.11 -2.15 5.17 -26.83 -0.14 -2.29 16 13 C -0.08 -1.47 2.10 -90.58 -0.19 -1.67 16 14 C -0.01 -0.21 3.52 -27.89 -0.10 -0.31 16 15 C -0.51 -14.41 8.94 -34.44 -0.31 -14.72 16 16 H 0.07 2.22 7.30 -52.49 -0.38 1.84 16 17 C 0.06 1.90 5.47 -17.81 -0.10 1.80 16 18 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 19 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 23 C -0.13 -2.17 5.36 -26.61 -0.14 -2.31 16 24 C 0.11 1.70 6.42 -3.71 -0.02 1.68 16 25 H 0.07 0.76 7.56 -51.93 -0.39 0.37 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.51 8.13 -51.93 -0.42 0.08 16 29 H 0.11 1.10 6.79 -51.93 -0.35 0.75 16 30 H 0.18 0.90 8.06 -52.48 -0.42 0.48 16 31 H 0.18 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.16 2.51 3.66 -82.08 -0.30 2.21 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.09 1.84 6.91 -51.93 -0.36 1.48 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 38 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.09 1.25 7.03 -51.93 -0.37 0.88 16 LS Contribution 339.03 15.07 5.11 5.11 Total: -1.00 -33.01 339.03 -8.72 -41.73 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.74 Total: 0.69 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -2.35 Total: -7.72 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.15 Total: -48.06 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.07 Total: -9.07 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.01 -8.72 -41.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584055287.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.250 kcal (2) G-P(sol) polarization free energy of solvation -33.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds