Wall clock time and date at job start Tue Mar 31 2020 06:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46494 * 109.46973 * 2 1 4 4 C 1.35410 * 126.43670 * 265.15944 * 3 2 1 5 5 C 1.35565 * 107.16087 * 180.28163 * 4 3 2 6 6 N 1.33107 * 108.34859 * 359.73833 * 5 4 3 7 7 C 1.31613 * 109.09568 * 359.97438 * 6 5 4 8 8 C 1.47403 * 125.86420 * 179.97438 * 7 6 5 9 9 O 1.21608 * 120.00033 * 174.34222 * 8 7 6 10 10 N 1.34778 * 120.00132 * 354.61800 * 8 7 6 11 11 C 1.46924 * 120.62667 * 4.17206 * 10 8 7 12 12 C 1.52769 * 109.00734 * 233.58180 * 11 10 8 13 13 C 1.53036 * 109.38257 * 305.59116 * 12 11 10 14 14 C 1.52995 * 109.44898 * 181.25358 * 13 12 11 15 15 C 1.50698 * 109.47165 * 64.93691 * 14 13 12 16 16 H 1.07998 * 120.00024 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99778 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99442 * 180.02562 * 17 15 14 19 19 Si 1.86793 * 120.00113 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.46999 * 90.00149 * 19 17 15 21 21 H 1.48503 * 109.46954 * 210.00158 * 19 17 15 22 22 H 1.48498 * 109.47122 * 329.99992 * 19 17 15 23 23 C 1.53042 * 109.53960 * 61.23868 * 13 12 11 24 24 C 1.46921 * 120.63193 * 184.44971 * 10 8 7 25 25 H 1.08999 * 109.46998 * 300.00325 * 1 2 3 26 26 H 1.08998 * 109.46712 * 60.00021 * 1 2 3 27 27 H 1.08996 * 109.47287 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46998 * 239.99675 * 2 1 3 29 29 H 1.08998 * 109.46712 * 119.99979 * 2 1 3 30 30 H 1.08003 * 126.41972 * 0.02562 * 4 3 2 31 31 H 1.07995 * 125.82797 * 179.76050 * 5 4 3 32 32 H 1.09000 * 109.58685 * 353.41784 * 11 10 8 33 33 H 1.08999 * 109.58581 * 113.84461 * 11 10 8 34 34 H 1.09000 * 109.56175 * 185.55308 * 12 11 10 35 35 H 1.09004 * 109.35600 * 65.49747 * 12 11 10 36 36 H 1.08998 * 109.46021 * 301.22028 * 13 12 11 37 37 H 1.09006 * 109.47261 * 184.93836 * 14 13 12 38 38 H 1.09005 * 109.47242 * 304.93887 * 14 13 12 39 39 H 0.97004 * 119.99560 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.49794 * 178.68150 * 23 13 12 41 41 H 1.09000 * 109.52595 * 58.60229 * 23 13 12 42 42 H 1.09001 * 109.58637 * 246.15646 * 24 10 8 43 43 H 1.08998 * 109.58911 * 6.44306 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3731 2.1088 -1.0855 5 6 2.7700 3.3257 -0.6391 6 7 2.6551 3.3435 0.6869 7 6 2.1982 2.1787 1.0952 8 6 1.9333 1.7972 2.4941 9 8 1.4139 0.7265 2.7444 10 7 2.2617 2.6373 3.4955 11 6 2.7998 3.9734 3.2056 12 6 4.1177 4.1528 3.9571 13 6 3.8958 3.8735 5.4453 14 6 5.2077 4.0832 6.2041 15 6 5.6077 5.5339 6.1244 16 1 4.9880 6.2362 5.5867 17 6 6.7650 5.9646 6.7380 18 7 7.1138 7.2308 6.6689 19 14 7.8372 4.7498 7.6674 20 1 8.8405 4.1657 6.7414 21 1 8.5349 5.4516 8.7746 22 1 6.9885 3.6663 8.2251 23 6 3.4250 2.4291 5.6304 24 6 2.0940 2.2323 4.8978 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.3487 1.7797 -2.1139 31 1 3.1194 4.1417 -1.2542 32 1 2.9753 4.0720 2.1343 33 1 2.0894 4.7324 3.5331 34 1 4.4753 5.1743 3.8280 35 1 4.8566 3.4554 3.5623 36 1 3.1388 4.5547 5.8337 37 1 5.0728 3.8003 7.2481 38 1 5.9879 3.4661 5.7583 39 1 7.9281 7.5337 7.1002 40 1 3.2897 2.2238 6.6923 41 1 4.1703 1.7476 5.2202 42 1 1.3249 2.8465 5.3661 43 1 1.8016 1.1832 4.9427 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584055287.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:12 Heat of formation + Delta-G solvation = 9.278328 kcal Electronic energy + Delta-G solvation = -23768.359777 eV Core-core repulsion = 20427.898906 eV Total energy + Delta-G solvation = -3340.460871 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.37853 -40.88851 -38.75719 -36.30193 -35.46454 -34.07746 -32.44376 -31.23364 -30.73358 -30.04554 -26.64414 -25.03379 -24.32325 -23.99786 -22.63207 -22.25831 -21.05063 -20.04931 -18.85363 -18.30244 -17.66967 -17.00204 -16.71662 -16.37137 -15.77877 -15.53266 -15.31677 -15.14160 -14.93006 -14.89922 -14.71823 -14.22202 -14.18305 -14.09012 -13.60598 -13.52086 -13.09704 -12.97891 -12.92165 -12.42769 -12.31218 -12.14079 -11.99107 -11.74259 -11.47140 -11.37524 -11.30995 -10.94209 -10.88013 -10.72657 -10.15891 -9.80670 -9.42294 -8.24593 -6.26260 0.30888 1.35944 1.37152 1.38973 1.49014 1.62353 2.18507 2.33412 2.38387 3.10578 3.16066 3.69893 3.77206 3.95678 4.03661 4.06479 4.09928 4.25508 4.35198 4.40944 4.43574 4.48381 4.59608 4.64886 4.73536 4.80382 4.86446 4.94078 5.00475 5.06119 5.14352 5.17283 5.22034 5.34013 5.38421 5.41870 5.57583 5.69765 5.74409 5.87325 6.04531 6.26802 6.36016 6.73190 6.80889 7.05559 7.37100 8.91959 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025796 B = 0.003750 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.199044 B = 7465.567379 C = 8038.392166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.093 3.907 3 N -0.411 5.411 4 C -0.003 4.003 5 C -0.050 4.050 6 N -0.463 5.463 7 C 0.110 3.890 8 C 0.597 3.403 9 O -0.567 6.567 10 N -0.582 5.582 11 C 0.062 3.938 12 C -0.106 4.106 13 C -0.072 4.072 14 C -0.006 4.006 15 C -0.517 4.517 16 H 0.038 0.962 17 C 0.003 3.997 18 N -0.952 5.952 19 Si 0.945 3.055 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.248 1.248 23 C -0.121 4.121 24 C 0.116 3.884 25 H 0.036 0.964 26 H 0.070 0.930 27 H 0.096 0.904 28 H 0.132 0.868 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.202 0.798 32 H 0.163 0.837 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.044 0.956 36 H 0.057 0.943 37 H 0.019 0.981 38 H 0.010 0.990 39 H 0.264 0.736 40 H 0.088 0.912 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.905 -16.402 -17.304 27.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.027 4.027 3 N -0.091 5.091 4 C -0.142 4.142 5 C -0.202 4.202 6 N -0.185 5.185 7 C -0.147 4.147 8 C 0.385 3.615 9 O -0.447 6.447 10 N -0.313 5.313 11 C -0.060 4.060 12 C -0.144 4.144 13 C -0.091 4.091 14 C -0.043 4.043 15 C -0.555 4.555 16 H 0.057 0.943 17 C -0.193 4.193 18 N -0.594 5.594 19 Si 0.769 3.231 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.171 1.171 23 C -0.159 4.159 24 C -0.005 4.005 25 H 0.056 0.944 26 H 0.089 0.911 27 H 0.115 0.885 28 H 0.150 0.850 29 H 0.105 0.895 30 H 0.247 0.753 31 H 0.219 0.781 32 H 0.178 0.822 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.037 0.963 38 H 0.028 0.972 39 H 0.073 0.927 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.955 -16.408 -16.515 26.642 hybrid contribution 0.753 -0.175 0.312 0.834 sum -12.202 -16.583 -16.203 26.200 Atomic orbital electron populations 1.22015 0.93075 1.04257 1.01993 1.22302 0.96705 0.77633 1.06097 1.45506 1.44385 1.13488 1.05750 1.23663 1.03622 0.92697 0.94228 1.23154 1.07259 0.99466 0.90316 1.69473 1.16426 1.18844 1.13799 1.22391 1.12408 0.89597 0.90291 1.16780 0.78464 0.83454 0.82828 1.90727 1.45927 1.23769 1.84315 1.47890 1.61348 1.16126 1.05923 1.23135 0.94031 0.81273 1.07579 1.21610 0.96635 1.01236 0.94908 1.20971 0.97210 0.95593 0.95326 1.19572 0.94423 0.94568 0.95733 1.21460 1.07247 0.94397 1.32374 0.94335 1.25959 0.99272 0.96796 0.97317 1.70072 1.25697 1.16946 1.46640 0.85735 0.79081 0.79659 0.78622 1.19663 1.21121 1.17137 1.21945 0.96392 0.96451 1.01115 1.21739 0.97661 1.01952 0.79187 0.94436 0.91081 0.88524 0.85040 0.89489 0.75312 0.78148 0.82157 0.92144 0.92231 0.93679 0.92466 0.96289 0.97175 0.92729 0.89401 0.92534 0.90153 0.88843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 10.17 71.99 0.73 -1.41 16 2 C 0.09 1.36 6.14 86.38 0.53 1.89 16 3 N -0.41 -8.21 2.76 -516.43 -1.42 -9.63 16 4 C 0.00 -0.05 11.53 83.52 0.96 0.91 16 5 C -0.05 -0.98 11.85 83.88 0.99 0.01 16 6 N -0.46 -12.89 7.51 -189.53 -1.42 -14.31 16 7 C 0.11 3.08 7.58 136.28 1.03 4.12 16 8 C 0.60 18.86 7.68 86.66 0.67 19.53 16 9 O -0.57 -18.60 13.69 -4.06 -0.06 -18.65 16 10 N -0.58 -18.55 2.98 -823.63 -2.45 -21.00 16 11 C 0.06 2.07 6.29 86.22 0.54 2.61 16 12 C -0.11 -4.12 5.17 30.53 0.16 -3.97 16 13 C -0.07 -2.86 2.10 -10.77 -0.02 -2.89 16 14 C -0.01 -0.27 3.52 29.85 0.10 -0.16 16 15 C -0.52 -29.91 8.94 25.60 0.23 -29.68 16 16 H 0.04 2.44 7.30 -2.91 -0.02 2.42 16 17 C 0.00 0.16 5.47 84.66 0.46 0.63 16 18 N -0.95 -60.53 13.96 21.45 0.30 -60.23 16 19 Si 0.94 45.31 27.47 68.60 1.88 47.19 16 20 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 22 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 23 C -0.12 -3.87 5.36 30.67 0.16 -3.71 16 24 C 0.12 3.39 6.42 86.36 0.55 3.95 16 25 H 0.04 0.77 7.56 -2.39 -0.02 0.76 16 26 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.13 0.87 8.13 -2.39 -0.02 0.85 16 29 H 0.09 1.67 6.79 -2.39 -0.02 1.66 16 30 H 0.23 0.91 8.06 -2.91 -0.02 0.89 16 31 H 0.20 2.73 8.06 -2.91 -0.02 2.71 16 32 H 0.16 5.34 3.66 -61.91 -0.23 5.11 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.06 2.64 6.91 -2.39 -0.02 2.62 16 35 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.02 0.88 7.20 -2.38 -0.02 0.86 16 38 H 0.01 0.47 7.57 -2.38 -0.02 0.46 16 39 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 40 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.08 2.15 8.14 -2.39 -0.02 2.14 16 43 H 0.09 2.62 7.03 -2.39 -0.02 2.60 16 Total: -1.00 -74.40 339.03 4.66 -69.74 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.72 Total: 15.04 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 7.11 Total: -8.16 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -5.00 Total: -105.17 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.06 Total: -18.65 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.88 Total: 47.19 kcal Total: -74.40 4.66 -69.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584055287.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.021 kcal (2) G-P(sol) polarization free energy of solvation -74.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds