Wall clock time and date at job start Tue Mar 31 2020 06:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46948 * 2 1 4 4 C 1.46494 * 120.00192 * 277.43897 * 3 2 1 5 5 C 1.50702 * 109.47090 * 269.99741 * 4 3 2 6 6 H 1.08003 * 119.99932 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00224 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99882 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99957 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47137 * 89.99513 * 9 7 5 11 11 H 1.48500 * 109.46978 * 209.99685 * 9 7 5 12 12 H 1.48500 * 109.46869 * 329.99239 * 9 7 5 13 13 C 1.34777 * 119.99696 * 97.43668 * 3 2 1 14 14 O 1.21555 * 119.99976 * 185.63965 * 13 3 2 15 15 C 1.47835 * 120.00310 * 5.63389 * 13 3 2 16 16 C 1.39951 * 120.93716 * 135.39069 * 15 13 3 17 17 N 1.32145 * 118.92111 * 179.97438 * 16 15 13 18 18 C 1.31872 * 120.96730 * 0.02562 * 17 16 15 19 19 C 1.50701 * 118.95099 * 180.02562 * 18 17 16 20 20 C 1.53004 * 109.47152 * 60.00145 * 19 18 17 21 21 C 1.53003 * 109.46956 * 300.00470 * 19 18 17 22 22 C 1.52992 * 109.47371 * 180.02562 * 19 18 17 23 23 N 1.31863 * 122.09865 * 0.28162 * 18 17 16 24 24 C 1.32157 * 120.96483 * 359.43239 * 23 18 17 25 25 H 1.09000 * 109.46819 * 188.81896 * 1 2 3 26 26 H 1.08996 * 109.46788 * 308.80999 * 1 2 3 27 27 H 1.08999 * 109.47429 * 68.81396 * 1 2 3 28 28 H 1.08996 * 109.47066 * 240.00774 * 2 1 3 29 29 H 1.08995 * 109.47751 * 120.00056 * 2 1 3 30 30 H 1.08997 * 109.47323 * 29.99778 * 4 3 2 31 31 H 1.09004 * 109.47306 * 150.00034 * 4 3 2 32 32 H 0.96998 * 119.99810 * 180.02562 * 8 7 5 33 33 H 1.08000 * 120.54045 * 359.96623 * 16 15 13 34 34 H 1.09002 * 109.47274 * 300.00079 * 20 19 18 35 35 H 1.08997 * 109.46923 * 180.02562 * 20 19 18 36 36 H 1.09000 * 109.46827 * 60.00143 * 20 19 18 37 37 H 1.09006 * 109.47145 * 179.97438 * 21 19 18 38 38 H 1.08999 * 109.46958 * 299.99225 * 21 19 18 39 39 H 1.08994 * 109.47630 * 60.00006 * 21 19 18 40 40 H 1.09000 * 109.47184 * 300.00210 * 22 19 18 41 41 H 1.09002 * 109.47045 * 59.99588 * 22 19 18 42 42 H 1.08996 * 109.47642 * 180.02562 * 22 19 18 43 43 H 1.07995 * 120.53554 * 180.25043 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1076 2.1266 -1.2580 5 6 3.4666 1.9127 -1.8733 6 1 4.1911 1.2840 -1.3770 7 6 3.7846 2.5187 -3.0702 8 7 4.9708 2.3324 -3.6068 9 14 2.5312 3.6056 -3.9288 10 1 2.6889 5.0066 -3.4625 11 1 2.7469 3.5452 -5.3968 12 1 1.1615 3.1288 -3.6097 13 6 2.3854 1.9662 1.1574 14 8 2.6927 3.1422 1.1734 15 6 2.4141 1.1777 2.4076 16 6 3.4904 1.2775 3.2966 17 7 3.4747 0.5548 4.4028 18 6 2.4660 -0.2505 4.6729 19 6 2.4948 -1.0534 5.9479 20 6 2.5608 -0.1048 7.1466 21 6 3.7245 -1.9637 5.9497 22 6 1.2287 -1.9071 6.0418 23 7 1.4353 -0.3793 3.8606 24 6 1.3662 0.3100 2.7352 25 1 -0.3633 -1.0155 0.1576 26 1 -0.3633 0.6441 0.8008 27 1 -0.3634 0.3714 -0.9582 28 1 1.8933 -0.5137 -0.8900 29 1 1.8935 -0.5138 0.8899 30 1 1.3383 1.7739 -1.9447 31 1 1.9606 3.1888 -1.0622 32 1 5.1946 2.7590 -4.4487 33 1 4.3204 1.9344 3.0820 34 1 3.4631 0.5031 7.0796 35 1 2.5821 -0.6855 8.0687 36 1 1.6848 0.5438 7.1454 37 1 3.7456 -2.5442 6.8721 38 1 3.6774 -2.6396 5.0958 39 1 4.6268 -1.3559 5.8827 40 1 0.3524 -1.2589 6.0403 41 1 1.1821 -2.5829 5.1878 42 1 1.2493 -2.4875 6.9641 43 1 0.5168 0.2021 2.0770 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584164731.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:26 Heat of formation + Delta-G solvation = 13.652889 kcal Electronic energy + Delta-G solvation = -23630.746083 eV Core-core repulsion = 20290.474907 eV Total energy + Delta-G solvation = -3340.271176 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.41859 -39.17294 -36.76060 -35.76035 -33.82635 -32.88235 -31.53869 -30.50410 -27.95351 -27.50561 -27.45553 -25.09856 -24.38167 -23.15818 -22.43070 -20.22587 -19.08996 -17.76150 -17.08927 -16.91054 -16.64174 -15.67233 -15.11453 -14.83006 -14.49875 -14.27865 -14.12383 -13.88343 -13.74643 -13.29651 -12.91281 -12.61525 -12.44058 -12.40522 -12.32396 -12.00297 -11.84208 -11.80253 -11.56405 -11.25188 -11.18259 -11.08229 -11.07486 -10.97343 -10.67146 -10.57710 -10.24308 -9.66195 -9.48623 -9.26523 -9.18269 -8.65389 -7.90597 -6.15211 -4.15302 0.60631 1.03217 3.08710 3.24622 3.30419 3.32590 3.49842 3.67033 3.80835 4.03016 4.33674 4.51248 4.66081 4.77031 4.78709 4.80348 5.04155 5.11414 5.18302 5.26697 5.36940 5.44661 5.45540 5.51372 5.63882 5.68023 5.74670 5.74779 5.80184 5.84200 5.94353 6.03970 6.10591 6.24034 6.25671 6.32274 6.58560 6.81875 6.90665 7.15737 7.51855 7.99084 8.02756 8.37271 8.69216 8.87530 9.44030 10.97911 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028746 B = 0.003789 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.825604 B = 7388.587532 C = 7710.980911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.095 3.905 3 N -0.581 5.581 4 C 0.216 3.784 5 C -0.534 4.534 6 H 0.075 0.925 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.265 1.265 13 C 0.560 3.440 14 O -0.528 6.528 15 C -0.227 4.227 16 C 0.199 3.801 17 N -0.514 5.514 18 C 0.331 3.669 19 C 0.000 4.000 20 C -0.136 4.136 21 C -0.136 4.136 22 C -0.128 4.128 23 N -0.515 5.515 24 C 0.162 3.838 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.040 0.960 32 H 0.266 0.734 33 H 0.177 0.823 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.725 -9.329 17.113 21.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.029 4.029 3 N -0.311 5.311 4 C 0.096 3.904 5 C -0.573 4.573 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.533 5.533 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.345 3.655 14 O -0.405 6.405 15 C -0.234 4.234 16 C 0.032 3.968 17 N -0.227 5.227 18 C 0.064 3.936 19 C -0.002 4.002 20 C -0.194 4.194 21 C -0.194 4.194 22 C -0.186 4.186 23 N -0.228 5.228 24 C -0.004 4.004 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.194 0.806 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -8.422 -9.182 17.750 21.686 hybrid contribution -0.472 1.099 -1.605 2.002 sum -8.893 -8.083 16.145 20.127 Atomic orbital electron populations 1.22374 0.96332 1.01982 1.02835 1.21704 0.93730 0.83929 1.03504 1.47870 1.62123 1.13408 1.07725 1.19729 0.98087 0.92716 0.79857 1.21300 0.98269 1.31374 1.06319 0.90705 1.24845 0.95271 0.95888 0.96847 1.69891 1.20240 1.43913 1.19240 0.86852 0.82083 0.81820 0.78969 1.19806 1.20990 1.19011 1.17735 0.78536 0.86684 0.82580 1.90781 1.48562 1.15446 1.85735 1.22005 0.99495 1.02238 0.99689 1.23411 0.95720 0.91497 0.86169 1.68232 1.27313 1.07782 1.19339 1.23248 0.84862 0.90698 0.94830 1.19408 0.97835 0.94202 0.88804 1.21842 1.02743 0.98859 0.95940 1.21847 0.96711 0.98815 1.02049 1.21713 0.95900 0.99342 1.01601 1.68310 1.26077 1.24153 1.04290 1.24147 0.97009 0.87170 0.92064 0.91253 0.92459 0.91287 0.89259 0.91213 0.94815 0.94160 0.92443 0.80552 0.91331 0.91596 0.92755 0.91605 0.92650 0.91324 0.91984 0.91869 0.92421 0.80066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 9.13 37.16 0.34 -1.76 16 2 C 0.10 1.45 5.60 -4.04 -0.02 1.43 16 3 N -0.58 -11.55 2.46 -176.18 -0.43 -11.98 16 4 C 0.22 5.09 4.29 -5.20 -0.02 5.07 16 5 C -0.53 -14.94 9.94 -34.44 -0.34 -15.29 16 6 H 0.07 2.30 8.06 -52.48 -0.42 1.88 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.89 -27.11 13.96 55.43 0.77 -26.33 16 9 Si 0.88 21.05 27.47 -169.99 -4.67 16.39 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 13 C 0.56 11.32 7.33 -12.33 -0.09 11.23 16 14 O -0.53 -12.70 16.56 5.32 0.09 -12.61 16 15 C -0.23 -3.73 5.12 -104.69 -0.54 -4.26 16 16 C 0.20 3.12 11.01 -16.78 -0.18 2.93 16 17 N -0.51 -7.50 9.77 -10.39 -0.10 -7.60 16 18 C 0.33 4.44 6.25 -157.07 -0.98 3.46 16 19 C 0.00 0.00 0.92 -155.66 -0.14 -0.15 16 20 C -0.14 -1.24 8.37 37.16 0.31 -0.93 16 21 C -0.14 -1.26 8.36 37.16 0.31 -0.95 16 22 C -0.13 -1.15 7.66 37.15 0.28 -0.87 16 23 N -0.52 -7.04 8.98 -10.39 -0.09 -7.13 16 24 C 0.16 2.27 8.72 -16.77 -0.15 2.13 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.65 6.39 -51.93 -0.33 0.32 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.09 1.42 8.12 -51.93 -0.42 1.00 16 29 H 0.07 0.97 5.06 -51.93 -0.26 0.71 16 30 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 31 H 0.04 1.01 6.78 -51.93 -0.35 0.66 16 32 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.18 2.65 8.06 -52.49 -0.42 2.23 16 34 H 0.07 0.68 8.01 -51.93 -0.42 0.27 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.69 8.01 -51.93 -0.42 0.28 16 40 H 0.06 0.59 8.04 -51.93 -0.42 0.17 16 41 H 0.06 0.60 8.03 -51.93 -0.42 0.19 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.18 2.20 3.74 -52.49 -0.20 2.01 16 LS Contribution 348.84 15.07 5.26 5.26 Total: -1.00 -32.79 348.84 -7.07 -39.87 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -6.57 Total: 0.08 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -1.32 Total: 4.07 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: 0.15 Total: -53.05 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.09 Total: -12.61 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.79 -7.07 -39.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584164731.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.521 kcal (2) G-P(sol) polarization free energy of solvation -32.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds